Wall clock time and date at job start Mon Mar 30 2020 03:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47113 * 2 1 4 4 C 1.50699 * 109.50145 * 299.92025 * 3 2 1 5 5 O 1.20826 * 119.99765 * 240.07560 * 4 3 2 6 6 O 1.34228 * 120.00411 * 60.08225 * 4 3 2 7 7 C 1.53119 * 109.50399 * 59.99477 * 3 2 1 8 8 C 1.53120 * 109.16026 * 177.63519 * 7 3 2 9 9 C 1.53031 * 109.27889 * 302.34545 * 8 7 3 10 10 N 1.46845 * 109.52355 * 59.17893 * 9 8 7 11 11 C 1.46902 * 111.00362 * 174.15705 * 10 9 8 12 12 C 1.50706 * 109.46580 * 66.04511 * 11 10 9 13 13 H 1.07999 * 120.00193 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99398 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99350 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00608 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47326 * 270.00340 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00090 * 16 14 12 19 19 H 1.48498 * 109.47210 * 149.99801 * 16 14 12 20 20 C 1.46844 * 111.20123 * 298.25865 * 10 9 8 21 21 H 1.08996 * 109.47725 * 300.00215 * 1 2 3 22 22 H 1.09006 * 109.46795 * 60.00284 * 1 2 3 23 23 H 1.08998 * 109.47211 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47317 * 239.99575 * 2 1 3 25 25 H 1.09006 * 109.46795 * 119.99716 * 2 1 3 26 26 H 0.96694 * 116.99966 * 180.02562 * 6 4 3 27 27 H 1.09007 * 109.52214 * 57.73013 * 7 3 2 28 28 H 1.09003 * 109.52822 * 297.54521 * 7 3 2 29 29 H 1.09009 * 109.49913 * 182.40768 * 8 7 3 30 30 H 1.09001 * 109.50434 * 62.29276 * 8 7 3 31 31 H 1.09003 * 109.46695 * 299.16465 * 9 8 7 32 32 H 1.09005 * 109.45457 * 179.19056 * 9 8 7 33 33 H 1.09000 * 109.47263 * 306.05115 * 11 10 9 34 34 H 1.08993 * 109.47737 * 186.04677 * 11 10 9 35 35 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 36 36 H 1.08996 * 109.46537 * 181.75262 * 20 10 9 37 37 H 1.09001 * 109.45812 * 301.72666 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5396 2.1530 -1.2312 5 8 2.3261 2.6107 -2.0261 6 8 0.2203 2.2774 -1.4448 7 6 1.5299 2.1650 1.2499 8 6 2.0928 3.5889 1.2721 9 6 3.6215 3.5284 1.2398 10 7 4.0594 2.8287 0.0254 11 6 5.5216 2.8725 -0.1093 12 6 6.1528 2.0816 1.0075 13 1 5.5300 1.5947 1.7434 14 6 7.5253 1.9787 1.0891 15 7 8.0761 1.2881 2.0634 16 14 8.6025 2.8202 -0.1841 17 1 8.8487 1.8912 -1.3161 18 1 7.9173 4.0391 -0.6843 19 1 9.8975 3.1994 0.4358 20 6 3.5703 1.4442 0.0045 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 -0.0525 2.7407 -2.2485 27 1 1.8591 1.6292 2.1403 28 1 0.4408 2.2042 1.2292 29 1 1.7677 4.0945 2.1815 30 1 1.7317 4.1366 0.4017 31 1 3.9825 2.9925 2.1178 32 1 4.0250 4.5410 1.2411 33 1 5.8603 3.9073 -0.0582 34 1 5.8113 2.4424 -1.0680 35 1 9.0417 1.2154 2.1206 36 1 3.9367 0.9430 -0.8913 37 1 3.9315 0.9182 0.8883 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062877181.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:49 Heat of formation + Delta-G solvation = -119.270205 kcal Electronic energy + Delta-G solvation = -18767.476994 eV Core-core repulsion = 15929.365129 eV Total energy + Delta-G solvation = -2838.111864 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.88350 -39.37222 -36.93255 -36.37525 -34.60714 -33.23044 -30.51540 -29.17761 -25.82435 -25.46591 -24.00420 -23.16496 -21.43311 -20.46491 -18.91886 -18.61320 -17.39092 -16.74015 -16.45936 -16.01973 -15.83886 -15.31726 -14.84221 -14.58683 -14.52684 -14.21445 -14.02433 -13.45916 -13.33658 -13.12785 -12.97167 -12.61043 -12.49342 -12.23515 -12.10878 -11.95049 -11.86010 -11.74044 -11.59726 -11.22774 -11.10233 -10.99339 -10.81352 -8.91003 -8.34402 -6.38681 1.32303 1.33310 1.45856 1.48837 2.24055 2.31396 3.00447 3.22852 3.61539 3.78558 3.93499 4.15560 4.27628 4.41613 4.50323 4.62408 4.66275 4.75405 4.80609 4.89720 4.94437 5.01477 5.02152 5.07606 5.13063 5.15346 5.20383 5.30897 5.40236 5.50374 5.65665 5.82053 6.08742 6.33057 6.46946 6.66891 7.26196 7.28812 8.81278 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033825 B = 0.007224 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.586179 B = 3875.159011 C = 3988.832742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.043 4.043 4 C 0.496 3.504 5 O -0.528 6.528 6 O -0.502 6.502 7 C -0.103 4.103 8 C -0.112 4.112 9 C 0.055 3.945 10 N -0.525 5.525 11 C 0.164 3.836 12 C -0.548 4.548 13 H 0.043 0.957 14 C 0.016 3.984 15 N -0.943 5.943 16 Si 0.943 3.057 17 H -0.269 1.269 18 H -0.253 1.253 19 H -0.280 1.280 20 C 0.086 3.914 21 H 0.067 0.933 22 H 0.078 0.922 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.417 0.583 27 H 0.075 0.925 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.018 0.982 32 H 0.060 0.940 33 H 0.025 0.975 34 H 0.018 0.982 35 H 0.267 0.733 36 H 0.051 0.949 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.990 0.917 -4.175 18.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.045 4.045 4 C 0.339 3.661 5 O -0.416 6.416 6 O -0.315 6.315 7 C -0.140 4.140 8 C -0.150 4.150 9 C -0.074 4.074 10 N -0.248 5.248 11 C 0.037 3.963 12 C -0.587 4.587 13 H 0.061 0.939 14 C -0.183 4.183 15 N -0.583 5.583 16 Si 0.767 3.233 17 H -0.194 1.194 18 H -0.177 1.177 19 H -0.205 1.205 20 C -0.042 4.042 21 H 0.086 0.914 22 H 0.096 0.904 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.097 0.903 26 H 0.277 0.723 27 H 0.094 0.906 28 H 0.123 0.877 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -17.695 1.049 -4.383 18.260 hybrid contribution 1.610 0.006 -0.136 1.615 sum -16.085 1.055 -4.519 16.741 Atomic orbital electron populations 1.22022 0.92583 1.02512 1.04042 1.21563 0.98600 0.91714 1.03117 1.20749 0.94372 0.97178 0.92162 1.23158 0.80099 0.76220 0.86662 1.90735 1.57723 1.45962 1.47135 1.84587 1.24702 1.72857 1.49387 1.21734 1.02184 0.94992 0.95123 1.21653 0.93257 0.97379 1.02716 1.22030 0.96230 0.98048 0.91052 1.62355 1.11249 1.14493 1.36682 1.19961 0.85585 0.95909 0.94884 1.21886 0.92444 1.32388 1.11956 0.93920 1.25821 0.99654 0.95379 0.97420 1.70056 1.11610 1.42687 1.33954 0.85765 0.78139 0.80123 0.79277 1.19430 1.17664 1.20518 1.21726 0.92123 0.90458 0.99932 0.91416 0.90385 0.91633 0.92067 0.90250 0.72262 0.90635 0.87652 0.88864 0.92251 0.96326 0.92187 0.95650 0.96383 0.92448 0.93045 0.94859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.04 71.98 0.65 -2.11 16 2 C -0.11 -2.68 4.99 30.59 0.15 -2.53 16 3 C -0.04 -1.28 0.52 -52.88 -0.03 -1.30 16 4 C 0.50 14.64 5.57 71.24 0.40 15.04 16 5 O -0.53 -20.24 16.00 21.96 0.35 -19.89 16 6 O -0.50 -9.84 10.22 -51.39 -0.53 -10.36 16 7 C -0.10 -2.63 4.31 30.67 0.13 -2.50 16 8 C -0.11 -3.23 5.84 30.64 0.18 -3.05 16 9 C 0.05 2.15 5.14 86.32 0.44 2.59 16 10 N -0.53 -23.23 3.72 -900.94 -3.35 -26.59 16 11 C 0.16 8.39 4.20 85.56 0.36 8.75 16 12 C -0.55 -31.70 8.29 25.60 0.21 -31.49 16 13 H 0.04 2.69 6.08 -2.91 -0.02 2.67 16 14 C 0.02 0.93 5.47 84.66 0.46 1.39 16 15 N -0.94 -58.93 13.96 21.45 0.30 -58.64 16 16 Si 0.94 45.49 27.47 68.60 1.88 47.38 16 17 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 18 H -0.25 -11.67 6.54 99.48 0.65 -11.02 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 C 0.09 3.50 3.28 86.33 0.28 3.79 16 21 H 0.07 1.09 6.49 -2.39 -0.02 1.07 16 22 H 0.08 1.39 5.33 -2.38 -0.01 1.38 16 23 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 26 H 0.42 4.88 9.10 -74.06 -0.67 4.20 16 27 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.11 2.07 6.50 -2.39 -0.02 2.06 16 29 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 30 H 0.06 1.73 7.35 -2.39 -0.02 1.71 16 31 H 0.02 0.81 7.03 -2.39 -0.02 0.80 16 32 H 0.06 2.36 8.06 -2.38 -0.02 2.34 16 33 H 0.03 1.30 7.12 -2.39 -0.02 1.29 16 34 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 35 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 36 H 0.05 2.24 8.06 -2.39 -0.02 2.22 16 37 H 0.03 1.50 6.57 -2.39 -0.02 1.48 16 Total: -1.00 -71.67 283.07 2.24 -69.44 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.34 Total: 10.09 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 3.25 Total: -11.43 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -3.05 Total: -85.22 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.17 Total: -30.25 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.38 kcal Total: -71.67 2.24 -69.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062877181.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.835 kcal (2) G-P(sol) polarization free energy of solvation -71.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds