Wall clock time and date at job start Mon Mar 30 2020 03:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47065 * 2 1 4 4 C 1.53003 * 109.46934 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.49518 * 300.06113 * 4 3 2 6 6 O 1.20828 * 120.00159 * 239.93210 * 5 4 3 7 7 O 1.34227 * 119.99902 * 59.93693 * 5 4 3 8 8 C 1.53048 * 109.49889 * 179.97438 * 4 3 2 9 9 C 1.53038 * 109.53391 * 301.37913 * 8 4 3 10 10 C 1.53189 * 109.31507 * 298.63203 * 9 8 4 11 11 N 1.46925 * 108.77219 * 54.63790 * 10 9 8 12 12 C 1.36941 * 120.63059 * 126.12031 * 11 10 9 13 13 H 1.08009 * 119.99687 * 332.52100 * 12 11 10 14 14 C 1.38805 * 120.00409 * 152.52438 * 12 11 10 15 15 N 1.31620 * 120.00328 * 159.56486 * 14 12 11 16 16 Si 1.86803 * 120.00072 * 339.56813 * 14 12 11 17 17 H 1.48500 * 109.47214 * 92.99400 * 16 14 12 18 18 H 1.48499 * 109.47277 * 212.99872 * 16 14 12 19 19 H 1.48503 * 109.46657 * 333.00043 * 16 14 12 20 20 C 1.46920 * 118.74092 * 306.38799 * 11 10 9 21 21 H 1.09005 * 109.47434 * 59.99913 * 1 2 3 22 22 H 1.08997 * 109.47723 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47201 * 300.00148 * 1 2 3 24 24 H 1.09002 * 109.47201 * 239.99852 * 2 1 3 25 25 H 1.08997 * 109.47155 * 120.00292 * 2 1 3 26 26 H 1.08992 * 109.47340 * 60.00017 * 3 2 1 27 27 H 1.09000 * 109.47269 * 299.99623 * 3 2 1 28 28 H 0.96697 * 116.99936 * 179.97438 * 7 5 4 29 29 H 1.08994 * 109.46245 * 181.35885 * 8 4 3 30 30 H 1.08994 * 109.45558 * 61.39614 * 8 4 3 31 31 H 1.09007 * 109.49713 * 178.67874 * 9 8 4 32 32 H 1.09001 * 109.49861 * 58.58952 * 9 8 4 33 33 H 1.08995 * 109.58672 * 294.85067 * 10 9 8 34 34 H 1.09002 * 109.70177 * 174.49638 * 10 9 8 35 35 H 0.96996 * 120.00059 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.58721 * 173.39780 * 20 11 10 37 37 H 1.08999 * 109.59077 * 293.82677 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0734 0.7306 1.2286 6 8 4.7696 1.3166 2.0235 7 8 3.7485 -0.5544 1.4403 8 6 4.0809 2.8851 -0.0013 9 6 3.5432 3.6178 -1.2326 10 6 4.0544 2.9234 -2.4988 11 7 3.6919 1.5009 -2.4370 12 6 2.9991 0.9123 -3.4612 13 1 2.3431 1.5060 -4.0806 14 6 3.1400 -0.4472 -3.7032 15 7 2.2181 -1.0933 -4.3851 16 14 4.6380 -1.3600 -3.0610 17 1 4.3285 -1.9460 -1.7321 18 1 5.0004 -2.4448 -4.0082 19 1 5.7759 -0.4146 -2.9322 20 6 4.0815 0.7233 -1.2529 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6766 1.9563 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 4.0953 -0.9685 2.2423 29 1 5.1705 2.8845 -0.0261 30 1 3.7386 3.3918 0.9010 31 1 3.8883 4.6518 -1.2202 32 1 2.4535 3.5974 -1.2212 33 1 5.1383 3.0220 -2.5574 34 1 3.5980 3.3790 -3.3775 35 1 2.3167 -2.0433 -4.5546 36 1 3.6409 -0.2721 -1.3082 37 1 5.1676 0.6426 -1.2098 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062878282.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:18 Heat of formation + Delta-G solvation = -80.591186 kcal Electronic energy + Delta-G solvation = -19287.738252 eV Core-core repulsion = 16451.303636 eV Total energy + Delta-G solvation = -2836.434616 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.57186 -38.05422 -35.93159 -34.29046 -32.96970 -30.97255 -30.56680 -26.07165 -25.38229 -24.01101 -22.72270 -21.02758 -20.59127 -18.47108 -17.70787 -16.72524 -16.51212 -15.44629 -15.02286 -14.37742 -14.09626 -13.69034 -13.65506 -13.24181 -13.12263 -12.48096 -12.30922 -12.20198 -11.78905 -11.68619 -11.39703 -11.31179 -10.86415 -10.60356 -10.52396 -10.32717 -10.28254 -10.00324 -9.92511 -9.85460 -9.59577 -9.36691 -8.63340 -7.02946 -5.98949 -3.35320 2.50274 3.30741 3.35787 3.46842 3.48677 4.49389 4.87443 5.01335 5.14603 5.29211 5.42193 5.57469 5.61870 5.71996 5.78958 5.83297 5.99316 6.11274 6.17624 6.28681 6.30061 6.35591 6.42219 6.44516 6.51378 6.57930 6.63537 6.68416 6.74975 6.89635 7.01990 7.08405 7.90028 8.19316 8.29118 8.88037 9.67251 10.04348 11.16449 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.019331 B = 0.012259 C = 0.011234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.081205 B = 2283.420175 C = 2491.923810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C -0.093 4.093 4 C -0.069 4.069 5 C 0.490 3.510 6 O -0.529 6.529 7 O -0.503 6.503 8 C -0.090 4.090 9 C -0.137 4.137 10 C 0.144 3.856 11 N -0.597 5.597 12 C -0.259 4.259 13 H 0.088 0.912 14 C 0.031 3.969 15 N -0.902 5.902 16 Si 0.866 3.134 17 H -0.282 1.282 18 H -0.301 1.301 19 H -0.271 1.271 20 C 0.139 3.861 21 H 0.056 0.944 22 H 0.048 0.952 23 H 0.040 0.960 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.094 0.906 28 H 0.396 0.604 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.066 0.934 35 H 0.263 0.737 36 H 0.091 0.909 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.588 4.061 9.768 10.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C -0.130 4.130 4 C -0.073 4.073 5 C 0.334 3.666 6 O -0.418 6.418 7 O -0.314 6.314 8 C -0.127 4.127 9 C -0.176 4.176 10 C 0.018 3.982 11 N -0.320 5.320 12 C -0.387 4.387 13 H 0.106 0.894 14 C -0.169 4.169 15 N -0.544 5.544 16 Si 0.696 3.304 17 H -0.210 1.210 18 H -0.229 1.229 19 H -0.196 1.196 20 C 0.013 3.987 21 H 0.075 0.925 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.254 0.746 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.556 4.258 9.490 10.417 hybrid contribution 1.173 -0.967 0.964 1.800 sum 1.729 3.291 10.455 11.096 Atomic orbital electron populations 1.21677 0.96449 1.01002 1.00913 1.21842 0.95329 0.96506 1.03752 1.21520 0.90694 0.98366 1.02454 1.21322 0.98547 0.95961 0.91436 1.23872 0.76114 0.79554 0.87103 1.90636 1.36734 1.67278 1.47121 1.84789 1.71012 1.27582 1.47998 1.21325 1.00613 0.92338 0.98452 1.22109 1.01516 0.98165 0.95840 1.21017 0.96870 0.84684 0.95626 1.44276 1.65656 1.06021 1.16019 1.18874 1.18819 0.92783 1.08211 0.89422 1.25224 0.97449 0.96609 0.97589 1.69819 1.32552 1.08976 1.43095 0.87193 0.86094 0.79638 0.77479 1.20960 1.22927 1.19592 1.21472 0.96728 0.96168 0.84368 0.92489 0.93295 0.94049 0.90140 0.91043 0.93266 0.88724 0.74635 0.91839 0.92142 0.92122 0.91287 0.95791 0.91510 0.92703 0.89136 0.95699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.91 37.16 0.37 -1.91 16 2 C -0.14 -2.46 5.07 -26.73 -0.14 -2.59 16 3 C -0.09 -1.62 3.77 -26.73 -0.10 -1.72 16 4 C -0.07 -1.27 0.51 -155.53 -0.08 -1.35 16 5 C 0.49 8.62 6.86 36.01 0.25 8.87 16 6 O -0.53 -10.01 16.74 -18.75 -0.31 -10.32 16 7 O -0.50 -7.63 10.27 -39.25 -0.40 -8.03 16 8 C -0.09 -1.49 4.01 -26.69 -0.11 -1.60 16 9 C -0.14 -2.18 5.74 -26.61 -0.15 -2.33 16 10 C 0.14 2.71 6.52 -3.71 -0.02 2.69 16 11 N -0.60 -13.53 2.20 -172.33 -0.38 -13.91 16 12 C -0.26 -6.85 10.03 -15.06 -0.15 -7.00 16 13 H 0.09 2.47 8.06 -52.48 -0.42 2.05 16 14 C 0.03 0.85 5.23 -17.43 -0.09 0.76 16 15 N -0.90 -26.56 13.97 55.49 0.78 -25.79 16 16 Si 0.87 21.83 24.35 -169.99 -4.14 17.69 16 17 H -0.28 -6.89 6.63 56.52 0.37 -6.52 16 18 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 19 H -0.27 -6.80 6.63 56.52 0.37 -6.43 16 20 C 0.14 3.01 2.60 -3.71 -0.01 3.00 16 21 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.08 1.74 6.32 -51.93 -0.33 1.42 16 25 H 0.07 1.20 5.32 -51.93 -0.28 0.92 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 1.78 5.97 -51.93 -0.31 1.47 16 28 H 0.40 3.95 9.10 45.56 0.41 4.36 16 29 H 0.06 1.09 8.13 -51.93 -0.42 0.67 16 30 H 0.06 0.94 8.07 -51.93 -0.42 0.53 16 31 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 32 H 0.07 1.10 6.34 -51.93 -0.33 0.77 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.09 2.13 2.54 -51.93 -0.13 1.99 16 37 H 0.03 0.56 7.09 -51.93 -0.37 0.19 16 LS Contribution 280.18 15.07 4.22 4.22 Total: -1.00 -30.36 280.18 -5.20 -35.56 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -4.73 Total: 3.75 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -0.24 Total: -3.18 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.40 Total: -39.69 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.72 Total: -18.35 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.14 Total: 17.69 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.36 -5.20 -35.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062878282.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.029 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds