Wall clock time and date at job start Mon Mar 30 2020 03:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47065 * 2 1 4 4 C 1.53003 * 109.46934 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.49518 * 300.06113 * 4 3 2 6 6 O 1.20828 * 120.00159 * 239.93210 * 5 4 3 7 7 O 1.34227 * 119.99902 * 59.93693 * 5 4 3 8 8 C 1.53048 * 109.49889 * 179.97438 * 4 3 2 9 9 C 1.53038 * 109.53391 * 301.37913 * 8 4 3 10 10 C 1.53189 * 109.31507 * 298.63203 * 9 8 4 11 11 N 1.46925 * 108.77219 * 54.63790 * 10 9 8 12 12 C 1.36941 * 120.63059 * 126.12031 * 11 10 9 13 13 H 1.08009 * 119.99687 * 332.52100 * 12 11 10 14 14 C 1.38805 * 120.00409 * 152.52438 * 12 11 10 15 15 N 1.31620 * 120.00328 * 159.56486 * 14 12 11 16 16 Si 1.86803 * 120.00072 * 339.56813 * 14 12 11 17 17 H 1.48500 * 109.47214 * 92.99400 * 16 14 12 18 18 H 1.48499 * 109.47277 * 212.99872 * 16 14 12 19 19 H 1.48503 * 109.46657 * 333.00043 * 16 14 12 20 20 C 1.46920 * 118.74092 * 306.38799 * 11 10 9 21 21 H 1.09005 * 109.47434 * 59.99913 * 1 2 3 22 22 H 1.08997 * 109.47723 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47201 * 300.00148 * 1 2 3 24 24 H 1.09002 * 109.47201 * 239.99852 * 2 1 3 25 25 H 1.08997 * 109.47155 * 120.00292 * 2 1 3 26 26 H 1.08992 * 109.47340 * 60.00017 * 3 2 1 27 27 H 1.09000 * 109.47269 * 299.99623 * 3 2 1 28 28 H 0.96697 * 116.99936 * 179.97438 * 7 5 4 29 29 H 1.08994 * 109.46245 * 181.35885 * 8 4 3 30 30 H 1.08994 * 109.45558 * 61.39614 * 8 4 3 31 31 H 1.09007 * 109.49713 * 178.67874 * 9 8 4 32 32 H 1.09001 * 109.49861 * 58.58952 * 9 8 4 33 33 H 1.08995 * 109.58672 * 294.85067 * 10 9 8 34 34 H 1.09002 * 109.70177 * 174.49638 * 10 9 8 35 35 H 0.96996 * 120.00059 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.58721 * 173.39780 * 20 11 10 37 37 H 1.08999 * 109.59077 * 293.82677 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0734 0.7306 1.2286 6 8 4.7696 1.3166 2.0235 7 8 3.7485 -0.5544 1.4403 8 6 4.0809 2.8851 -0.0013 9 6 3.5432 3.6178 -1.2326 10 6 4.0544 2.9234 -2.4988 11 7 3.6919 1.5009 -2.4370 12 6 2.9991 0.9123 -3.4612 13 1 2.3431 1.5060 -4.0806 14 6 3.1400 -0.4472 -3.7032 15 7 2.2181 -1.0933 -4.3851 16 14 4.6380 -1.3600 -3.0610 17 1 4.3285 -1.9460 -1.7321 18 1 5.0004 -2.4448 -4.0082 19 1 5.7759 -0.4146 -2.9322 20 6 4.0815 0.7233 -1.2529 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6766 1.9563 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 4.0953 -0.9685 2.2423 29 1 5.1705 2.8845 -0.0261 30 1 3.7386 3.3918 0.9010 31 1 3.8883 4.6518 -1.2202 32 1 2.4535 3.5974 -1.2212 33 1 5.1383 3.0220 -2.5574 34 1 3.5980 3.3790 -3.3775 35 1 2.3167 -2.0433 -4.5546 36 1 3.6409 -0.2721 -1.3082 37 1 5.1676 0.6426 -1.2098 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062878282.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:18 Heat of formation + Delta-G solvation = -100.464767 kcal Electronic energy + Delta-G solvation = -19288.600035 eV Core-core repulsion = 16451.303636 eV Total energy + Delta-G solvation = -2837.296399 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.96556 -39.54269 -37.24454 -35.89248 -34.65657 -32.76973 -32.08279 -27.55247 -27.16060 -25.44662 -24.36252 -22.46046 -22.07912 -20.01684 -19.05078 -18.57316 -18.03658 -16.88402 -16.75474 -15.98908 -15.64890 -15.21055 -15.17729 -14.78547 -14.65323 -14.13079 -13.81084 -13.77162 -13.45093 -13.13438 -12.89362 -12.69953 -12.50452 -12.29747 -12.07602 -11.92765 -11.74746 -11.58802 -11.52083 -11.34119 -11.26239 -10.96348 -10.61241 -8.92917 -8.13972 -5.45043 1.12594 1.28245 1.38897 1.44990 2.09855 2.41138 3.07691 3.35614 3.60791 3.74896 3.92214 4.21226 4.24868 4.35014 4.41434 4.44077 4.56734 4.67069 4.76811 4.82772 4.90378 5.00009 5.04086 5.06014 5.09644 5.18097 5.20319 5.35445 5.50153 5.54929 5.61454 5.64441 5.89384 6.16796 6.91270 6.99134 7.62955 8.04411 9.05308 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.019331 B = 0.012259 C = 0.011234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.081205 B = 2283.420175 C = 2491.923810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C -0.087 4.087 4 C -0.070 4.070 5 C 0.497 3.503 6 O -0.541 6.541 7 O -0.504 6.504 8 C -0.087 4.087 9 C -0.126 4.126 10 C 0.136 3.864 11 N -0.608 5.608 12 C -0.237 4.237 13 H 0.062 0.938 14 C -0.017 4.017 15 N -0.946 5.946 16 Si 0.916 3.084 17 H -0.273 1.273 18 H -0.311 1.311 19 H -0.269 1.269 20 C 0.139 3.861 21 H 0.039 0.961 22 H 0.051 0.949 23 H 0.069 0.931 24 H 0.036 0.964 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.421 0.579 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.032 0.968 34 H 0.065 0.935 35 H 0.260 0.740 36 H 0.070 0.930 37 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.095 5.222 12.063 13.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.172 4.172 3 C -0.124 4.124 4 C -0.073 4.073 5 C 0.341 3.659 6 O -0.431 6.431 7 O -0.317 6.317 8 C -0.125 4.125 9 C -0.164 4.164 10 C 0.011 3.989 11 N -0.332 5.332 12 C -0.366 4.366 13 H 0.079 0.921 14 C -0.213 4.213 15 N -0.592 5.592 16 Si 0.746 3.254 17 H -0.200 1.200 18 H -0.240 1.240 19 H -0.193 1.193 20 C 0.013 3.987 21 H 0.059 0.941 22 H 0.070 0.930 23 H 0.088 0.912 24 H 0.055 0.945 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.282 0.718 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 1.088 5.435 11.831 13.066 hybrid contribution 1.001 -1.285 0.275 1.652 sum 2.089 4.150 12.106 12.967 Atomic orbital electron populations 1.21642 0.95097 1.01474 1.01444 1.21790 0.96578 0.96646 1.02197 1.21462 0.90134 0.97962 1.02859 1.21231 0.99051 0.96814 0.90210 1.23539 0.75732 0.80070 0.86597 1.90639 1.37172 1.67762 1.47518 1.84712 1.70873 1.26568 1.49593 1.21342 1.00385 0.91271 0.99465 1.22006 1.01401 0.99437 0.93600 1.21239 0.97406 0.82650 0.97568 1.44365 1.65522 1.07549 1.15723 1.18787 1.17395 0.92365 1.08055 0.92061 1.25657 0.99324 0.97560 0.98746 1.69923 1.34292 1.09090 1.45909 0.86371 0.83474 0.78430 0.77130 1.19966 1.23963 1.19348 1.21330 0.96021 0.95688 0.85644 0.94138 0.92957 0.91236 0.94532 0.89652 0.90549 0.90448 0.71782 0.92187 0.90278 0.88724 0.91333 0.95044 0.91652 0.93061 0.91162 0.96441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 9.91 71.98 0.71 -3.53 16 2 C -0.14 -4.67 5.07 30.59 0.16 -4.51 16 3 C -0.09 -2.84 3.77 30.59 0.12 -2.72 16 4 C -0.07 -2.40 0.51 -52.85 -0.03 -2.42 16 5 C 0.50 16.05 6.86 71.24 0.49 16.54 16 6 O -0.54 -18.71 16.74 21.96 0.37 -18.34 16 7 O -0.50 -13.87 10.27 -51.39 -0.53 -14.40 16 8 C -0.09 -2.62 4.01 30.62 0.12 -2.49 16 9 C -0.13 -3.61 5.74 30.67 0.18 -3.43 16 10 C 0.14 4.91 6.52 86.36 0.56 5.48 16 11 N -0.61 -27.29 2.20 -699.12 -1.54 -28.83 16 12 C -0.24 -12.75 10.03 84.03 0.84 -11.90 16 13 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 14 C -0.02 -0.98 5.23 84.86 0.44 -0.53 16 15 N -0.95 -57.59 13.97 21.65 0.30 -57.29 16 16 Si 0.92 45.87 24.35 68.60 1.67 47.54 16 17 H -0.27 -13.07 6.63 99.48 0.66 -12.41 16 18 H -0.31 -15.88 7.11 99.48 0.71 -15.18 16 19 H -0.27 -13.16 6.63 99.48 0.66 -12.50 16 20 C 0.14 5.88 2.60 86.36 0.22 6.10 16 21 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 22 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.04 1.59 6.32 -2.39 -0.02 1.57 16 25 H 0.09 2.67 5.32 -2.39 -0.01 2.66 16 26 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 27 H 0.08 2.81 5.97 -2.39 -0.01 2.80 16 28 H 0.42 6.99 9.10 -74.06 -0.67 6.32 16 29 H 0.06 1.86 8.13 -2.39 -0.02 1.84 16 30 H 0.08 2.13 8.07 -2.39 -0.02 2.11 16 31 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 32 H 0.07 2.00 6.34 -2.39 -0.02 1.99 16 33 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 2.35 7.93 -2.39 -0.02 2.33 16 35 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 36 H 0.07 3.28 2.54 -2.39 -0.01 3.27 16 37 H 0.02 0.77 7.09 -2.39 -0.02 0.75 16 Total: -1.00 -65.77 280.18 4.40 -61.38 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.30 Total: 13.38 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 3.82 Total: -3.44 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -1.24 Total: -86.12 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.16 Total: -32.74 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.67 Total: 47.54 kcal Total: -65.77 4.40 -61.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062878282.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.089 kcal (2) G-P(sol) polarization free energy of solvation -65.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds