Wall clock time and date at job start Mon Mar 30 2020 03:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47168 * 2 1 4 4 C 1.53005 * 109.47168 * 179.97438 * 3 2 1 5 5 C 1.50707 * 109.49634 * 59.99718 * 4 3 2 6 6 O 1.20829 * 119.99834 * 119.93960 * 5 4 3 7 7 O 1.34228 * 120.00130 * 299.93292 * 5 4 3 8 8 C 1.53038 * 109.52791 * 180.02562 * 4 3 2 9 9 C 1.53046 * 109.53288 * 58.59947 * 8 4 3 10 10 C 1.53191 * 109.31394 * 61.37074 * 9 8 4 11 11 N 1.46932 * 108.77062 * 305.36209 * 10 9 8 12 12 C 1.36936 * 120.62728 * 233.63086 * 11 10 9 13 13 H 1.07999 * 120.00248 * 152.63454 * 12 11 10 14 14 C 1.38810 * 119.99984 * 332.62916 * 12 11 10 15 15 N 1.31622 * 120.00116 * 159.33920 * 14 12 11 16 16 Si 1.86800 * 120.00112 * 339.34062 * 14 12 11 17 17 H 1.48498 * 109.47222 * 92.91036 * 16 14 12 18 18 H 1.48510 * 109.47197 * 212.90762 * 16 14 12 19 19 H 1.48498 * 109.47008 * 332.90747 * 16 14 12 20 20 C 1.46921 * 118.74052 * 53.61132 * 11 10 9 21 21 H 1.08996 * 109.46960 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46967 * 300.00339 * 1 2 3 23 23 H 1.09005 * 109.46530 * 60.00185 * 1 2 3 24 24 H 1.09003 * 109.46977 * 239.99521 * 2 1 3 25 25 H 1.09002 * 109.47205 * 120.00091 * 2 1 3 26 26 H 1.08993 * 109.47454 * 59.99959 * 3 2 1 27 27 H 1.09005 * 109.47244 * 299.99378 * 3 2 1 28 28 H 0.96697 * 117.00123 * 180.02562 * 7 5 4 29 29 H 1.08994 * 109.46059 * 178.62048 * 8 4 3 30 30 H 1.09005 * 109.45834 * 298.58381 * 8 4 3 31 31 H 1.08997 * 109.50027 * 301.41516 * 9 8 4 32 32 H 1.09004 * 109.49224 * 181.31746 * 9 8 4 33 33 H 1.08998 * 109.58585 * 185.57654 * 10 9 8 34 34 H 1.08996 * 109.70673 * 65.21502 * 10 9 8 35 35 H 0.97001 * 120.00227 * 180.02562 * 15 14 12 36 36 H 1.09005 * 109.58792 * 186.60582 * 20 11 10 37 37 H 1.08992 * 109.70542 * 66.24761 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0736 0.7319 -1.2293 6 8 4.7679 1.3194 -2.0248 7 8 3.7509 -0.5537 -1.4411 8 6 4.0817 2.8848 0.0013 9 6 3.5439 3.6179 1.2324 10 6 4.0544 2.9234 2.4988 11 7 3.6912 1.5010 2.4370 12 6 3.0023 0.9116 3.4633 13 1 2.3679 0.0595 3.2688 14 6 3.1194 1.4094 4.7538 15 7 2.1928 1.1411 5.6493 16 14 4.5921 2.4599 5.2196 17 1 4.2571 3.8941 5.0294 18 1 4.9426 2.2181 6.6424 19 1 5.7473 2.1029 4.3577 20 6 4.0809 0.7231 1.2531 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6768 1.9563 0.8899 27 1 1.6768 1.9563 -0.8901 28 1 4.0976 -0.9669 -2.2436 29 1 5.1713 2.8836 0.0265 30 1 3.7400 3.3917 -0.9012 31 1 2.4542 3.5979 1.2206 32 1 3.8895 4.6516 1.2200 33 1 3.5958 3.3798 3.3760 34 1 5.1382 3.0214 2.5603 35 1 2.2745 1.4892 6.5510 36 1 3.6397 -0.2721 1.3083 37 1 5.1667 0.6396 1.2093 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062878285.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:20 Heat of formation + Delta-G solvation = -81.088823 kcal Electronic energy + Delta-G solvation = -18987.770519 eV Core-core repulsion = 16151.314324 eV Total energy + Delta-G solvation = -2836.456195 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.61564 -38.07973 -35.99744 -34.50788 -32.81818 -30.93409 -30.68207 -26.17441 -25.34759 -24.21170 -22.30762 -21.15786 -21.01095 -18.44782 -17.71802 -16.78823 -16.22258 -15.60339 -15.25001 -14.26688 -14.14405 -13.86370 -13.69313 -13.28720 -13.13867 -12.60621 -12.39072 -12.12952 -11.77763 -11.62520 -11.48799 -11.28656 -11.07685 -10.73543 -10.65807 -10.41945 -10.22316 -10.08085 -9.90188 -9.82146 -9.50671 -9.44327 -8.64901 -7.03374 -5.97140 -3.33978 2.45000 3.27906 3.31161 3.48237 3.50969 4.51226 4.87245 4.97828 5.08408 5.24292 5.42757 5.48885 5.56902 5.64612 5.72237 5.79879 5.91812 6.08891 6.10574 6.24878 6.27845 6.34297 6.34761 6.40304 6.50894 6.54171 6.57626 6.63632 6.69314 6.82969 6.88489 6.96713 7.91000 8.12505 8.29815 8.89497 9.68758 10.04812 11.18292 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025558 B = 0.009631 C = 0.008165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.287253 B = 2906.665098 C = 3428.371348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C -0.098 4.098 4 C -0.068 4.068 5 C 0.493 3.507 6 O -0.527 6.527 7 O -0.505 6.505 8 C -0.090 4.090 9 C -0.136 4.136 10 C 0.120 3.880 11 N -0.597 5.597 12 C -0.259 4.259 13 H 0.089 0.911 14 C 0.026 3.974 15 N -0.906 5.906 16 Si 0.881 3.119 17 H -0.288 1.288 18 H -0.304 1.304 19 H -0.271 1.271 20 C 0.163 3.837 21 H 0.048 0.952 22 H 0.056 0.944 23 H 0.043 0.957 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.049 0.951 28 H 0.396 0.604 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.080 0.920 37 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.737 -0.069 -12.268 12.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.135 4.135 4 C -0.071 4.071 5 C 0.336 3.664 6 O -0.416 6.416 7 O -0.315 6.315 8 C -0.127 4.127 9 C -0.175 4.175 10 C -0.005 4.005 11 N -0.320 5.320 12 C -0.387 4.387 13 H 0.106 0.894 14 C -0.173 4.173 15 N -0.549 5.549 16 Si 0.711 3.289 17 H -0.216 1.216 18 H -0.232 1.232 19 H -0.196 1.196 20 C 0.036 3.964 21 H 0.067 0.933 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.115 0.885 27 H 0.068 0.932 28 H 0.254 0.746 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.705 0.269 -11.918 11.942 hybrid contribution 1.127 0.411 -0.208 1.217 sum 1.831 0.679 -12.125 12.282 Atomic orbital electron populations 1.21724 0.96500 1.00991 1.01271 1.21824 0.95214 0.96563 1.03478 1.21569 0.90897 0.98241 1.02807 1.21252 0.98288 0.95978 0.91604 1.23811 0.75989 0.79479 0.87139 1.90652 1.36652 1.67181 1.47112 1.84749 1.71215 1.27571 1.48014 1.21332 1.00624 0.92393 0.98385 1.22104 1.01685 0.98152 0.95587 1.21419 0.97160 0.85251 0.96648 1.44273 1.65701 1.04060 1.17971 1.18881 1.19571 1.14994 0.85207 0.89384 1.25244 0.97698 0.98711 0.95674 1.69829 1.32534 1.47735 1.04756 0.86996 0.85536 0.79643 0.76696 1.21626 1.23215 1.19602 1.20926 0.96380 0.94918 0.84211 0.93268 0.92444 0.93821 0.90796 0.90675 0.88538 0.93178 0.74585 0.91813 0.92147 0.91069 0.92236 0.90683 0.95568 0.92753 0.90138 0.95810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.13 -2.03 5.08 -26.73 -0.14 -2.17 16 3 C -0.10 -1.56 3.77 -26.73 -0.10 -1.66 16 4 C -0.07 -1.14 0.51 -155.53 -0.08 -1.22 16 5 C 0.49 7.68 6.86 36.01 0.25 7.92 16 6 O -0.53 -9.30 16.73 -18.75 -0.31 -9.61 16 7 O -0.50 -6.26 10.28 -39.25 -0.40 -6.66 16 8 C -0.09 -1.48 4.00 -26.69 -0.11 -1.59 16 9 C -0.14 -2.35 5.74 -26.61 -0.15 -2.50 16 10 C 0.12 2.55 4.21 -3.71 -0.02 2.53 16 11 N -0.60 -13.48 2.21 -172.32 -0.38 -13.86 16 12 C -0.26 -6.85 10.03 -15.06 -0.15 -7.00 16 13 H 0.09 2.48 8.06 -52.49 -0.42 2.05 16 14 C 0.03 0.72 5.23 -17.43 -0.09 0.63 16 15 N -0.91 -26.97 13.97 55.49 0.78 -26.20 16 16 Si 0.88 21.93 24.34 -169.99 -4.14 17.79 16 17 H -0.29 -6.93 6.62 56.52 0.37 -6.56 16 18 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 19 H -0.27 -6.68 6.64 56.52 0.38 -6.30 16 20 C 0.16 3.14 4.92 -3.71 -0.02 3.12 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 1.03 5.33 -51.93 -0.28 0.76 16 25 H 0.07 1.30 6.31 -51.93 -0.33 0.98 16 26 H 0.10 1.76 5.97 -51.93 -0.31 1.45 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.40 3.06 9.10 45.56 0.41 3.48 16 29 H 0.06 1.08 8.13 -51.93 -0.42 0.66 16 30 H 0.06 0.94 8.06 -51.93 -0.42 0.52 16 31 H 0.07 1.23 6.34 -51.93 -0.33 0.90 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.73 4.49 -51.93 -0.23 1.50 16 34 H 0.03 0.56 7.07 -51.93 -0.37 0.19 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.08 1.55 5.96 -51.93 -0.31 1.24 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 280.15 15.07 4.22 4.22 Total: -1.00 -30.49 280.15 -5.20 -35.70 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -4.73 Total: 2.25 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -0.24 Total: -3.63 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.39 Total: -40.06 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.72 Total: -16.27 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.14 Total: 17.79 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.49 -5.20 -35.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062878285.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.394 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds