Wall clock time and date at job start Mon Mar 30 2020 03:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47168 * 2 1 4 4 C 1.53005 * 109.47168 * 179.97438 * 3 2 1 5 5 C 1.50707 * 109.49634 * 59.99718 * 4 3 2 6 6 O 1.20829 * 119.99834 * 119.93960 * 5 4 3 7 7 O 1.34228 * 120.00130 * 299.93292 * 5 4 3 8 8 C 1.53038 * 109.52791 * 180.02562 * 4 3 2 9 9 C 1.53046 * 109.53288 * 58.59947 * 8 4 3 10 10 C 1.53191 * 109.31394 * 61.37074 * 9 8 4 11 11 N 1.46932 * 108.77062 * 305.36209 * 10 9 8 12 12 C 1.36936 * 120.62728 * 233.63086 * 11 10 9 13 13 H 1.07999 * 120.00248 * 152.63454 * 12 11 10 14 14 C 1.38810 * 119.99984 * 332.62916 * 12 11 10 15 15 N 1.31622 * 120.00116 * 159.33920 * 14 12 11 16 16 Si 1.86800 * 120.00112 * 339.34062 * 14 12 11 17 17 H 1.48498 * 109.47222 * 92.91036 * 16 14 12 18 18 H 1.48510 * 109.47197 * 212.90762 * 16 14 12 19 19 H 1.48498 * 109.47008 * 332.90747 * 16 14 12 20 20 C 1.46921 * 118.74052 * 53.61132 * 11 10 9 21 21 H 1.08996 * 109.46960 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46967 * 300.00339 * 1 2 3 23 23 H 1.09005 * 109.46530 * 60.00185 * 1 2 3 24 24 H 1.09003 * 109.46977 * 239.99521 * 2 1 3 25 25 H 1.09002 * 109.47205 * 120.00091 * 2 1 3 26 26 H 1.08993 * 109.47454 * 59.99959 * 3 2 1 27 27 H 1.09005 * 109.47244 * 299.99378 * 3 2 1 28 28 H 0.96697 * 117.00123 * 180.02562 * 7 5 4 29 29 H 1.08994 * 109.46059 * 178.62048 * 8 4 3 30 30 H 1.09005 * 109.45834 * 298.58381 * 8 4 3 31 31 H 1.08997 * 109.50027 * 301.41516 * 9 8 4 32 32 H 1.09004 * 109.49224 * 181.31746 * 9 8 4 33 33 H 1.08998 * 109.58585 * 185.57654 * 10 9 8 34 34 H 1.08996 * 109.70673 * 65.21502 * 10 9 8 35 35 H 0.97001 * 120.00227 * 180.02562 * 15 14 12 36 36 H 1.09005 * 109.58792 * 186.60582 * 20 11 10 37 37 H 1.08992 * 109.70542 * 66.24761 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0736 0.7319 -1.2293 6 8 4.7679 1.3194 -2.0248 7 8 3.7509 -0.5537 -1.4411 8 6 4.0817 2.8848 0.0013 9 6 3.5439 3.6179 1.2324 10 6 4.0544 2.9234 2.4988 11 7 3.6912 1.5010 2.4370 12 6 3.0023 0.9116 3.4633 13 1 2.3679 0.0595 3.2688 14 6 3.1194 1.4094 4.7538 15 7 2.1928 1.1411 5.6493 16 14 4.5921 2.4599 5.2196 17 1 4.2571 3.8941 5.0294 18 1 4.9426 2.2181 6.6424 19 1 5.7473 2.1029 4.3577 20 6 4.0809 0.7231 1.2531 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6768 1.9563 0.8899 27 1 1.6768 1.9563 -0.8901 28 1 4.0976 -0.9669 -2.2436 29 1 5.1713 2.8836 0.0265 30 1 3.7400 3.3917 -0.9012 31 1 2.4542 3.5979 1.2206 32 1 3.8895 4.6516 1.2200 33 1 3.5958 3.3798 3.3760 34 1 5.1382 3.0214 2.5603 35 1 2.2745 1.4892 6.5510 36 1 3.6397 -0.2721 1.3083 37 1 5.1667 0.6396 1.2093 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062878285.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:20 Heat of formation + Delta-G solvation = -101.056570 kcal Electronic energy + Delta-G solvation = -18988.636386 eV Core-core repulsion = 16151.314324 eV Total energy + Delta-G solvation = -2837.322062 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.89399 -39.51283 -37.15534 -36.05598 -34.45342 -32.80832 -32.09666 -27.62210 -27.08227 -25.57958 -23.89379 -22.68184 -22.30679 -19.87672 -18.90475 -18.60638 -17.68472 -17.07689 -16.84802 -15.77591 -15.63974 -15.34590 -15.11288 -14.91796 -14.46555 -14.26217 -13.84706 -13.63957 -13.35172 -13.11684 -12.82795 -12.67860 -12.55037 -12.43393 -12.09409 -11.96802 -11.60304 -11.59356 -11.45860 -11.32381 -11.19726 -10.91433 -10.65511 -8.94327 -8.12287 -5.44493 1.21380 1.31823 1.44092 1.51852 2.14336 2.44368 3.09514 3.34178 3.61415 3.77711 3.95642 4.18221 4.21268 4.36055 4.41375 4.47734 4.57997 4.69024 4.75215 4.88322 4.93243 4.96505 5.02129 5.03386 5.08732 5.15918 5.18365 5.33583 5.46064 5.56924 5.64542 5.67211 5.89780 6.17573 6.91613 7.07138 7.63502 8.03587 9.06959 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025558 B = 0.009631 C = 0.008165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.287253 B = 2906.665098 C = 3428.371348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 C -0.093 4.093 4 C -0.066 4.066 5 C 0.504 3.496 6 O -0.545 6.545 7 O -0.498 6.498 8 C -0.086 4.086 9 C -0.127 4.127 10 C 0.113 3.887 11 N -0.608 5.608 12 C -0.236 4.236 13 H 0.060 0.940 14 C -0.031 4.031 15 N -0.954 5.954 16 Si 0.939 3.061 17 H -0.275 1.275 18 H -0.315 1.315 19 H -0.265 1.265 20 C 0.162 3.838 21 H 0.058 0.942 22 H 0.036 0.964 23 H 0.063 0.937 24 H 0.092 0.908 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.421 0.579 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.030 0.970 35 H 0.260 0.740 36 H 0.075 0.925 37 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.515 0.589 -14.655 14.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C -0.130 4.130 4 C -0.069 4.069 5 C 0.348 3.652 6 O -0.436 6.436 7 O -0.311 6.311 8 C -0.124 4.124 9 C -0.166 4.166 10 C -0.011 4.011 11 N -0.331 5.331 12 C -0.365 4.365 13 H 0.078 0.922 14 C -0.226 4.226 15 N -0.600 5.600 16 Si 0.769 3.231 17 H -0.201 1.201 18 H -0.244 1.244 19 H -0.190 1.190 20 C 0.036 3.964 21 H 0.078 0.922 22 H 0.055 0.945 23 H 0.082 0.918 24 H 0.110 0.890 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.283 0.717 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.505 0.920 -14.365 14.473 hybrid contribution 0.852 0.095 0.434 0.961 sum 2.357 1.015 -13.931 14.165 Atomic orbital electron populations 1.21698 0.95592 1.01710 1.01220 1.21778 0.96037 0.96009 1.02852 1.21496 0.90473 0.98562 1.02464 1.21100 0.98650 0.96218 0.90948 1.23307 0.75467 0.80158 0.86304 1.90659 1.37410 1.67863 1.47625 1.84660 1.70863 1.26057 1.49557 1.21311 1.00430 0.92115 0.98541 1.22000 1.01499 0.99279 0.93816 1.21488 0.97216 0.84435 0.97973 1.44324 1.65631 1.05187 1.17974 1.18796 1.18096 1.13459 0.86176 0.92230 1.25792 0.99864 1.01025 0.95887 1.69950 1.34461 1.50496 1.05107 0.86043 0.82529 0.79034 0.75530 1.20149 1.24414 1.19006 1.20977 0.96399 0.94810 0.84190 0.92247 0.94496 0.91809 0.89029 0.93545 0.91164 0.91109 0.71688 0.92021 0.90369 0.91312 0.89509 0.92797 0.95175 0.93093 0.90648 0.95616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.91 71.98 0.71 -3.14 16 2 C -0.13 -3.77 5.08 30.59 0.16 -3.61 16 3 C -0.09 -2.79 3.77 30.59 0.12 -2.68 16 4 C -0.07 -2.07 0.51 -52.85 -0.03 -2.09 16 5 C 0.50 14.16 6.86 71.24 0.49 14.65 16 6 O -0.55 -17.41 16.73 21.95 0.37 -17.04 16 7 O -0.50 -10.70 10.28 -51.39 -0.53 -11.23 16 8 C -0.09 -2.60 4.00 30.62 0.12 -2.48 16 9 C -0.13 -4.08 5.74 30.67 0.18 -3.91 16 10 C 0.11 4.64 4.21 86.36 0.36 5.00 16 11 N -0.61 -27.24 2.21 -699.11 -1.54 -28.78 16 12 C -0.24 -12.76 10.03 84.03 0.84 -11.91 16 13 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 14 C -0.03 -1.76 5.23 84.86 0.44 -1.31 16 15 N -0.95 -58.66 13.97 21.65 0.30 -58.35 16 16 Si 0.94 45.85 24.34 68.60 1.67 47.52 16 17 H -0.27 -12.66 6.62 99.48 0.66 -12.00 16 18 H -0.31 -15.82 7.11 99.48 0.71 -15.12 16 19 H -0.27 -12.54 6.64 99.48 0.66 -11.88 16 20 C 0.16 6.09 4.92 86.36 0.42 6.52 16 21 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 24 H 0.09 2.31 5.33 -2.39 -0.01 2.30 16 25 H 0.05 1.61 6.31 -2.39 -0.02 1.60 16 26 H 0.07 2.52 5.97 -2.39 -0.01 2.51 16 27 H 0.07 1.85 8.14 -2.38 -0.02 1.84 16 28 H 0.42 4.85 9.10 -74.06 -0.67 4.18 16 29 H 0.06 1.90 8.13 -2.39 -0.02 1.88 16 30 H 0.08 2.13 8.06 -2.38 -0.02 2.11 16 31 H 0.07 2.26 6.34 -2.39 -0.02 2.24 16 32 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 33 H 0.05 2.43 4.49 -2.39 -0.01 2.42 16 34 H 0.03 1.22 7.07 -2.39 -0.02 1.20 16 35 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 36 H 0.08 2.89 5.96 -2.38 -0.01 2.87 16 37 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -65.88 280.15 4.39 -61.49 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.30 Total: 11.37 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 3.82 Total: -4.97 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -1.24 Total: -87.14 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.16 Total: -28.27 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.67 Total: 47.52 kcal Total: -65.88 4.39 -61.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062878285.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.570 kcal (2) G-P(sol) polarization free energy of solvation -65.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds