Wall clock time and date at job start Mon Mar 30 2020 03:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46695 * 2 1 4 4 C 1.50693 * 110.29312 * 59.29637 * 3 2 1 5 5 O 1.20832 * 120.00283 * 120.69655 * 4 3 2 6 6 O 1.34231 * 120.00084 * 300.70213 * 4 3 2 7 7 C 1.54267 * 110.32270 * 297.16508 * 3 2 1 8 8 C 1.54376 * 105.06403 * 241.10795 * 7 3 2 9 9 N 1.48562 * 104.59440 * 23.85392 * 8 7 3 10 10 C 1.46900 * 110.99991 * 200.96253 * 9 8 7 11 11 C 1.53006 * 109.46910 * 174.67975 * 10 9 8 12 12 C 1.50698 * 109.46866 * 174.74105 * 11 10 9 13 13 H 1.08004 * 120.00341 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00056 * 179.97438 * 12 11 10 15 15 N 1.31508 * 119.99887 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00062 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47090 * 59.99960 * 16 14 12 18 18 H 1.48495 * 109.46843 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.46961 * 299.99991 * 16 14 12 20 20 C 1.48827 * 104.23482 * 320.49388 * 9 8 7 21 21 H 1.08998 * 109.47167 * 60.00539 * 1 2 3 22 22 H 1.08991 * 109.47333 * 300.00172 * 1 2 3 23 23 H 1.09000 * 109.46648 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47167 * 119.99461 * 2 1 3 25 25 H 1.09001 * 109.47318 * 239.99675 * 2 1 3 26 26 H 0.96702 * 117.00466 * 179.97438 * 6 4 3 27 27 H 1.08999 * 110.32281 * 0.02562 * 7 3 2 28 28 H 1.09004 * 110.32049 * 122.20916 * 7 3 2 29 29 H 1.08995 * 110.41325 * 142.63538 * 8 7 3 30 30 H 1.08997 * 110.41111 * 265.07899 * 8 7 3 31 31 H 1.08997 * 109.46709 * 294.67353 * 10 9 8 32 32 H 1.08994 * 109.47381 * 54.67640 * 10 9 8 33 33 H 1.08995 * 109.47098 * 294.73758 * 11 10 9 34 34 H 1.08999 * 109.47080 * 54.74149 * 11 10 9 35 35 H 0.96998 * 120.00432 * 180.02562 * 15 14 12 36 36 H 1.08999 * 110.44957 * 280.77120 * 20 9 8 37 37 H 1.09005 * 110.49320 * 158.25032 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5337 2.1758 1.2153 5 8 2.3163 2.6528 2.0027 6 8 0.2133 2.2990 1.4232 7 6 1.5958 2.1678 -1.2871 8 6 2.9078 2.5682 -1.9951 9 7 3.9193 1.6104 -1.4786 10 6 5.2796 2.1374 -1.6512 11 6 6.2817 1.1882 -0.9909 12 6 7.6841 1.6594 -1.2781 13 1 7.8446 2.5472 -1.8718 14 6 8.7623 0.9576 -0.7820 15 7 8.5669 -0.1226 -0.0579 16 14 10.5006 1.5421 -1.1374 17 1 10.6831 2.9119 -0.5936 18 1 11.4731 0.6216 -0.4956 19 1 10.7272 1.5578 -2.6049 20 6 3.5831 1.4657 -0.0361 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 1.8934 -0.5137 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 -0.0635 2.7774 2.2167 27 1 1.0142 1.4962 -1.9185 28 1 1.0130 3.0551 -1.0397 29 1 2.8036 2.4654 -3.0752 30 1 3.1840 3.5899 -1.7345 31 1 5.5046 2.2209 -2.7144 32 1 5.3500 3.1208 -1.1865 33 1 6.1158 1.1767 0.0863 34 1 6.1473 0.1829 -1.3901 35 1 9.3254 -0.6161 0.2914 36 1 3.9639 2.3153 0.5308 37 1 3.9867 0.5330 0.3581 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062937391.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:51 Heat of formation + Delta-G solvation = -100.835250 kcal Electronic energy + Delta-G solvation = -17984.295186 eV Core-core repulsion = 15146.982721 eV Total energy + Delta-G solvation = -2837.312465 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.86451 -38.40999 -36.18425 -34.77598 -32.95588 -30.94313 -28.71356 -28.25112 -24.78174 -23.44729 -23.04299 -21.37978 -20.26970 -19.17691 -17.90405 -16.74085 -16.15855 -15.92161 -15.08996 -14.65400 -14.44624 -14.18253 -13.62614 -13.45683 -12.96238 -12.70416 -12.52446 -12.00240 -11.81728 -11.76412 -11.41841 -11.32095 -11.00312 -10.92314 -10.83763 -10.70899 -10.52474 -10.43456 -10.20926 -9.87326 -9.34035 -9.12054 -8.32307 -7.93144 -5.96981 -3.99453 2.21256 2.95780 3.35786 3.39899 3.42339 4.41700 4.47651 4.64820 4.65184 4.81022 5.22194 5.30577 5.38326 5.39116 5.40483 5.59812 5.71962 5.86156 5.94085 6.02245 6.08088 6.09150 6.13841 6.32167 6.38391 6.40109 6.43138 6.50371 6.92884 7.32933 7.42717 7.74699 7.87912 7.90192 8.07876 8.44884 9.07024 9.64039 11.14508 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.037803 B = 0.005195 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.499652 B = 5388.589998 C = 5494.670032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.105 4.105 3 C -0.056 4.056 4 C 0.488 3.512 5 O -0.509 6.509 6 O -0.509 6.509 7 C -0.107 4.107 8 C 0.026 3.974 9 N -0.506 5.506 10 C 0.052 3.948 11 C 0.026 3.974 12 C -0.522 4.522 13 H 0.054 0.946 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.051 3.949 21 H 0.056 0.944 22 H 0.073 0.927 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.401 0.599 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.022 0.978 33 H 0.016 0.984 34 H 0.026 0.974 35 H 0.261 0.739 36 H 0.063 0.937 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.226 2.870 -0.072 18.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.142 4.142 3 C -0.057 4.057 4 C 0.330 3.670 5 O -0.396 6.396 6 O -0.321 6.321 7 C -0.145 4.145 8 C -0.103 4.103 9 N -0.230 5.230 10 C -0.076 4.076 11 C -0.012 4.012 12 C -0.561 4.561 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.077 4.077 21 H 0.075 0.925 22 H 0.092 0.908 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.107 0.893 26 H 0.259 0.741 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.035 0.965 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.777 2.140 -0.402 17.910 hybrid contribution 0.964 1.450 0.872 1.947 sum -16.814 3.589 0.469 17.199 Atomic orbital electron populations 1.22067 0.95113 1.01477 1.03276 1.21554 0.96235 0.92569 1.03874 1.21412 0.97564 0.96246 0.90521 1.23505 0.79738 0.76845 0.86898 1.90738 1.57003 1.45599 1.46226 1.84671 1.26339 1.71880 1.49245 1.22415 0.97882 0.99934 0.94231 1.23163 0.91728 0.95052 1.00324 1.65623 1.03542 1.41990 1.11843 1.22524 0.86688 0.97324 1.01015 1.19110 0.91730 0.94741 0.95587 1.21142 0.91150 1.10941 1.32891 0.92820 1.24986 0.99172 0.94958 0.95138 1.69955 1.30979 1.17234 1.35091 0.86649 0.84261 0.78532 0.78500 1.20310 1.21273 1.20215 1.23160 0.89432 1.03803 0.91270 0.92465 0.90840 0.92876 0.91488 0.89268 0.74094 0.89464 0.91274 0.89946 0.94160 0.91520 0.95960 0.96529 0.95558 0.92940 0.91928 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.17 37.16 0.34 -1.24 16 2 C -0.10 -1.26 4.75 -26.73 -0.13 -1.39 16 3 C -0.06 -0.77 0.72 -154.28 -0.11 -0.88 16 4 C 0.49 6.68 6.68 36.00 0.24 6.92 16 5 O -0.51 -8.85 16.20 -18.76 -0.30 -9.15 16 6 O -0.51 -4.89 10.37 -39.26 -0.41 -5.30 16 7 C -0.11 -1.29 5.75 -25.35 -0.15 -1.44 16 8 C 0.03 0.37 6.49 -2.18 -0.01 0.36 16 9 N -0.51 -9.27 5.46 -229.74 -1.25 -10.52 16 10 C 0.05 1.11 4.87 -3.82 -0.02 1.10 16 11 C 0.03 0.68 4.68 -27.88 -0.13 0.55 16 12 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 13 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -27.25 13.29 55.43 0.74 -26.52 16 16 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 C 0.05 0.92 4.22 -2.03 -0.01 0.91 16 21 H 0.06 0.52 6.68 -51.93 -0.35 0.18 16 22 H 0.07 0.71 5.38 -51.93 -0.28 0.43 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.40 2.23 9.10 45.56 0.41 2.64 16 27 H 0.09 0.93 6.59 -51.93 -0.34 0.58 16 28 H 0.07 0.76 7.70 -51.93 -0.40 0.36 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.04 0.60 7.89 -51.93 -0.41 0.19 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.02 0.48 7.97 -51.93 -0.41 0.07 16 33 H 0.02 0.46 7.21 -51.93 -0.37 0.09 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.06 1.26 6.76 -51.93 -0.35 0.91 16 37 H 0.09 1.81 7.51 -51.93 -0.39 1.42 16 LS Contribution 295.78 15.07 4.46 4.46 Total: -1.00 -32.73 295.78 -7.15 -39.87 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -4.97 Total: -0.92 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -0.39 Total: -8.86 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.52 Total: -37.04 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.71 Total: -14.46 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.73 -7.15 -39.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062937391.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.961 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds