Wall clock time and date at job start Mon Mar 30 2020 03:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46695 * 2 1 4 4 C 1.50693 * 110.29312 * 59.29637 * 3 2 1 5 5 O 1.20832 * 120.00283 * 120.69655 * 4 3 2 6 6 O 1.34231 * 120.00084 * 300.70213 * 4 3 2 7 7 C 1.54267 * 110.32270 * 297.16508 * 3 2 1 8 8 C 1.54376 * 105.06403 * 241.10795 * 7 3 2 9 9 N 1.48562 * 104.59440 * 23.85392 * 8 7 3 10 10 C 1.46900 * 110.99991 * 200.96253 * 9 8 7 11 11 C 1.53006 * 109.46910 * 174.67975 * 10 9 8 12 12 C 1.50698 * 109.46866 * 174.74105 * 11 10 9 13 13 H 1.08004 * 120.00341 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00056 * 179.97438 * 12 11 10 15 15 N 1.31508 * 119.99887 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00062 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47090 * 59.99960 * 16 14 12 18 18 H 1.48495 * 109.46843 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.46961 * 299.99991 * 16 14 12 20 20 C 1.48827 * 104.23482 * 320.49388 * 9 8 7 21 21 H 1.08998 * 109.47167 * 60.00539 * 1 2 3 22 22 H 1.08991 * 109.47333 * 300.00172 * 1 2 3 23 23 H 1.09000 * 109.46648 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47167 * 119.99461 * 2 1 3 25 25 H 1.09001 * 109.47318 * 239.99675 * 2 1 3 26 26 H 0.96702 * 117.00466 * 179.97438 * 6 4 3 27 27 H 1.08999 * 110.32281 * 0.02562 * 7 3 2 28 28 H 1.09004 * 110.32049 * 122.20916 * 7 3 2 29 29 H 1.08995 * 110.41325 * 142.63538 * 8 7 3 30 30 H 1.08997 * 110.41111 * 265.07899 * 8 7 3 31 31 H 1.08997 * 109.46709 * 294.67353 * 10 9 8 32 32 H 1.08994 * 109.47381 * 54.67640 * 10 9 8 33 33 H 1.08995 * 109.47098 * 294.73758 * 11 10 9 34 34 H 1.08999 * 109.47080 * 54.74149 * 11 10 9 35 35 H 0.96998 * 120.00432 * 180.02562 * 15 14 12 36 36 H 1.08999 * 110.44957 * 280.77120 * 20 9 8 37 37 H 1.09005 * 110.49320 * 158.25032 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5337 2.1758 1.2153 5 8 2.3163 2.6528 2.0027 6 8 0.2133 2.2990 1.4232 7 6 1.5958 2.1678 -1.2871 8 6 2.9078 2.5682 -1.9951 9 7 3.9193 1.6104 -1.4786 10 6 5.2796 2.1374 -1.6512 11 6 6.2817 1.1882 -0.9909 12 6 7.6841 1.6594 -1.2781 13 1 7.8446 2.5472 -1.8718 14 6 8.7623 0.9576 -0.7820 15 7 8.5669 -0.1226 -0.0579 16 14 10.5006 1.5421 -1.1374 17 1 10.6831 2.9119 -0.5936 18 1 11.4731 0.6216 -0.4956 19 1 10.7272 1.5578 -2.6049 20 6 3.5831 1.4657 -0.0361 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 1.8934 -0.5137 0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 -0.0635 2.7774 2.2167 27 1 1.0142 1.4962 -1.9185 28 1 1.0130 3.0551 -1.0397 29 1 2.8036 2.4654 -3.0752 30 1 3.1840 3.5899 -1.7345 31 1 5.5046 2.2209 -2.7144 32 1 5.3500 3.1208 -1.1865 33 1 6.1158 1.1767 0.0863 34 1 6.1473 0.1829 -1.3901 35 1 9.3254 -0.6161 0.2914 36 1 3.9639 2.3153 0.5308 37 1 3.9867 0.5330 0.3581 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062937391.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:50 Heat of formation + Delta-G solvation = -124.617321 kcal Electronic energy + Delta-G solvation = -17985.326454 eV Core-core repulsion = 15146.982721 eV Total energy + Delta-G solvation = -2838.343733 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.98821 -39.66482 -37.21377 -36.26366 -34.85495 -32.50074 -29.91822 -29.86821 -26.55555 -24.93878 -23.99453 -22.82700 -21.80919 -20.43963 -18.93704 -18.63119 -17.51818 -17.19877 -16.53996 -16.36385 -15.86284 -15.36831 -14.96591 -14.67324 -14.35943 -14.16961 -14.06147 -13.48790 -13.13831 -13.11324 -12.81747 -12.73468 -12.56597 -12.41074 -12.37616 -11.90138 -11.83942 -11.67779 -11.56610 -11.36235 -11.27484 -11.23231 -10.57004 -9.45915 -8.21376 -6.33417 1.12785 1.39002 1.42894 1.50740 1.96127 2.39693 3.11888 3.18831 3.29018 3.53594 3.75560 4.20957 4.28921 4.35266 4.39648 4.41294 4.56247 4.62694 4.70384 4.73471 4.82595 4.93965 4.99852 5.03475 5.14415 5.19265 5.35290 5.42134 5.55272 5.55823 5.61960 5.75435 5.88500 6.07483 6.25671 6.82883 6.96585 7.35799 8.90836 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.037803 B = 0.005195 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.499652 B = 5388.589998 C = 5494.670032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.103 4.103 3 C -0.053 4.053 4 C 0.498 3.502 5 O -0.554 6.554 6 O -0.489 6.489 7 C -0.096 4.096 8 C 0.022 3.978 9 N -0.513 5.513 10 C 0.068 3.932 11 C 0.035 3.965 12 C -0.548 4.548 13 H 0.061 0.939 14 C 0.001 3.999 15 N -0.932 5.932 16 Si 0.968 3.032 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.263 1.263 20 C 0.051 3.949 21 H 0.070 0.930 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.084 0.916 26 H 0.423 0.577 27 H 0.112 0.888 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.017 0.983 33 H -0.014 1.014 34 H -0.003 1.003 35 H 0.264 0.736 36 H 0.033 0.967 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.771 3.741 -1.252 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.140 4.140 3 C -0.055 4.055 4 C 0.342 3.658 5 O -0.445 6.445 6 O -0.302 6.302 7 C -0.133 4.133 8 C -0.106 4.106 9 N -0.237 5.237 10 C -0.060 4.060 11 C -0.002 4.002 12 C -0.586 4.586 13 H 0.080 0.920 14 C -0.197 4.197 15 N -0.572 5.572 16 Si 0.792 3.208 17 H -0.193 1.193 18 H -0.207 1.207 19 H -0.188 1.188 20 C -0.077 4.077 21 H 0.089 0.911 22 H 0.094 0.906 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.102 0.898 26 H 0.285 0.715 27 H 0.131 0.869 28 H 0.108 0.892 29 H 0.122 0.878 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.036 0.964 33 H 0.004 0.996 34 H 0.016 0.984 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.377 3.022 -1.589 19.676 hybrid contribution 1.371 1.155 1.278 2.201 sum -18.006 4.177 -0.311 18.487 Atomic orbital electron populations 1.22017 0.92562 1.02565 1.03996 1.21551 0.98292 0.91016 1.03183 1.21323 0.94288 0.97929 0.91949 1.23348 0.80572 0.75816 0.86084 1.90739 1.58445 1.47632 1.47695 1.84596 1.23546 1.71636 1.50436 1.22447 0.96835 1.01062 0.92990 1.23329 0.91542 0.93963 1.01720 1.65535 1.02739 1.43277 1.12143 1.22169 0.87728 0.95584 1.00549 1.18914 0.92960 0.94435 0.93911 1.21598 0.92403 1.11388 1.33200 0.92049 1.25993 1.04167 0.94904 0.94631 1.70103 1.32532 1.18544 1.36040 0.85454 0.78128 0.78221 0.78960 1.19346 1.20713 1.18795 1.22993 0.93002 1.01076 0.90614 0.91104 0.90620 0.91714 0.92600 0.89766 0.71522 0.86950 0.89194 0.87836 0.94409 0.90772 0.96437 0.99581 0.98426 0.92710 0.94859 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.17 71.98 0.66 -1.87 16 2 C -0.10 -2.36 4.75 30.60 0.15 -2.22 16 3 C -0.05 -1.42 0.72 -52.03 -0.04 -1.46 16 4 C 0.50 13.10 6.68 71.23 0.48 13.58 16 5 O -0.55 -19.60 16.20 21.94 0.36 -19.24 16 6 O -0.49 -7.95 10.37 -51.43 -0.53 -8.48 16 7 C -0.10 -2.05 5.75 31.49 0.18 -1.86 16 8 C 0.02 0.60 6.49 86.45 0.56 1.16 16 9 N -0.51 -19.06 5.46 -880.77 -4.81 -23.87 16 10 C 0.07 3.00 4.87 86.31 0.42 3.42 16 11 C 0.04 1.96 4.68 29.85 0.14 2.10 16 12 C -0.55 -32.34 9.11 25.60 0.23 -32.10 16 13 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 14 C 0.00 0.06 5.46 84.66 0.46 0.52 16 15 N -0.93 -58.56 13.29 21.45 0.28 -58.27 16 16 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 19 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 20 C 0.05 1.93 4.22 86.40 0.36 2.30 16 21 H 0.07 0.99 6.68 -2.39 -0.02 0.97 16 22 H 0.08 1.21 5.38 -2.39 -0.01 1.20 16 23 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 26 H 0.42 3.38 9.10 -74.06 -0.67 2.71 16 27 H 0.11 1.90 6.59 -2.39 -0.02 1.88 16 28 H 0.09 1.61 7.70 -2.38 -0.02 1.59 16 29 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.04 1.06 7.89 -2.39 -0.02 1.04 16 31 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 32 H 0.02 0.78 7.97 -2.39 -0.02 0.76 16 33 H -0.01 -0.86 7.21 -2.39 -0.02 -0.88 16 34 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 35 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 36 H 0.03 1.43 6.76 -2.39 -0.02 1.42 16 37 H 0.07 2.77 7.51 -2.38 -0.02 2.75 16 Total: -1.00 -73.50 295.78 1.32 -72.18 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 0.38 Total: 6.74 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 3.61 Total: -16.41 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -4.52 Total: -82.14 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.18 Total: -27.72 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -73.50 1.32 -72.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062937391.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.434 kcal (2) G-P(sol) polarization free energy of solvation -73.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds