Wall clock time and date at job start Mon Mar 30 2020 03:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47280 * 2 1 4 4 C 1.50701 * 110.27220 * 302.08645 * 3 2 1 5 5 O 1.20820 * 120.00193 * 237.91315 * 4 3 2 6 6 O 1.34233 * 119.99619 * 57.91248 * 4 3 2 7 7 C 1.54591 * 110.30785 * 64.28394 * 3 2 1 8 8 C 1.54942 * 102.91948 * 140.87649 * 7 3 2 9 9 N 1.48536 * 103.22418 * 322.58184 * 8 7 3 10 10 C 1.46901 * 110.99521 * 159.72350 * 9 8 7 11 11 C 1.52996 * 109.47309 * 69.87619 * 10 9 8 12 12 C 1.50696 * 109.47219 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00109 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00287 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99550 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00310 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47478 * 59.99942 * 16 14 12 18 18 H 1.48503 * 109.47289 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46987 * 300.00083 * 16 14 12 20 20 C 1.47900 * 105.82189 * 39.21141 * 9 8 7 21 21 H 1.08999 * 109.46881 * 300.00308 * 1 2 3 22 22 H 1.09000 * 109.46761 * 60.00551 * 1 2 3 23 23 H 1.08994 * 109.47201 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46881 * 239.99692 * 2 1 3 25 25 H 1.09002 * 109.46798 * 120.00229 * 2 1 3 26 26 H 0.96709 * 116.99520 * 179.97438 * 6 4 3 27 27 H 1.08990 * 110.72764 * 22.51580 * 7 3 2 28 28 H 1.08999 * 110.71949 * 259.23141 * 7 3 2 29 29 H 1.09004 * 110.66299 * 204.14962 * 8 7 3 30 30 H 1.09000 * 110.66998 * 81.01629 * 8 7 3 31 31 H 1.09000 * 109.46947 * 189.87391 * 10 9 8 32 32 H 1.08996 * 109.47545 * 309.87352 * 10 9 8 33 33 H 1.09000 * 109.46930 * 299.99782 * 11 10 9 34 34 H 1.08996 * 109.47035 * 59.99421 * 11 10 9 35 35 H 0.97001 * 119.99802 * 180.02562 * 15 14 12 36 36 H 1.08998 * 109.91806 * 94.01913 * 20 9 8 37 37 H 1.08995 * 109.91750 * 215.12045 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5062 2.1851 -1.1977 5 8 2.2705 2.6899 -1.9856 6 8 0.1814 2.2857 -1.3892 7 6 1.6258 2.1580 1.3062 8 6 2.8751 3.0093 1.6461 9 7 4.0041 2.1282 1.2519 10 6 5.2322 2.9072 1.0450 11 6 5.7391 3.4275 2.3915 12 6 6.9993 4.2262 2.1792 13 1 7.3985 4.3506 1.1835 14 6 7.6422 4.7990 3.2562 15 7 7.1558 4.6479 4.4687 16 14 9.2039 5.7895 2.9930 17 1 8.9170 6.9367 2.0949 18 1 9.6960 6.2944 4.3000 19 1 10.2406 4.9242 2.3750 20 6 3.5799 1.4649 -0.0001 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 -0.1135 2.7719 -2.1714 27 1 1.4259 1.4340 2.0960 28 1 0.7584 2.7962 1.1379 29 1 2.9125 3.2285 2.7132 30 1 2.8837 3.9299 1.0626 31 1 5.9931 2.2723 0.5911 32 1 5.0216 3.7495 0.3860 33 1 4.9783 4.0625 2.8454 34 1 5.9498 2.5853 3.0505 35 1 7.6078 5.0511 5.2263 36 1 3.9430 2.0277 -0.8599 37 1 3.9690 0.4472 -0.0313 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062937392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:52 Heat of formation + Delta-G solvation = -100.496723 kcal Electronic energy + Delta-G solvation = -17903.132834 eV Core-core repulsion = 15065.835049 eV Total energy + Delta-G solvation = -2837.297785 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.98315 -38.37104 -36.27990 -34.87182 -32.94232 -30.86040 -28.97990 -28.15836 -24.75253 -23.46880 -22.93613 -21.67523 -19.96461 -19.60523 -18.00024 -16.54919 -16.28495 -16.06282 -14.86108 -14.74357 -14.34570 -14.21183 -13.84174 -13.52984 -13.29340 -12.57597 -12.29048 -12.19229 -11.92392 -11.85220 -11.40551 -11.22820 -11.01236 -10.98652 -10.81780 -10.74919 -10.66804 -10.46765 -10.34724 -9.79442 -9.33140 -9.11297 -8.30721 -7.84723 -5.96700 -3.98936 2.12543 2.88321 3.35990 3.39899 3.42817 4.37941 4.43297 4.54776 4.66782 4.76688 5.13579 5.21679 5.29500 5.39229 5.45875 5.58402 5.62703 5.84928 5.87662 5.93817 6.02204 6.08516 6.13193 6.24306 6.31109 6.36211 6.44227 6.49571 6.98403 7.38843 7.46762 7.77586 7.80499 7.91470 8.10250 8.46641 9.08012 9.64504 11.14708 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.046144 B = 0.004861 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.650259 B = 5758.981822 C = 5982.378881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.105 4.105 3 C -0.061 4.061 4 C 0.490 3.510 5 O -0.511 6.511 6 O -0.507 6.507 7 C -0.107 4.107 8 C 0.035 3.965 9 N -0.512 5.512 10 C 0.054 3.946 11 C 0.031 3.969 12 C -0.523 4.523 13 H 0.053 0.947 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.892 3.108 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.039 3.961 21 H 0.058 0.942 22 H 0.075 0.925 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.401 0.599 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.024 0.976 33 H 0.016 0.984 34 H 0.025 0.975 35 H 0.261 0.739 36 H 0.066 0.934 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.467 -7.826 -9.044 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.143 4.143 3 C -0.063 4.063 4 C 0.332 3.668 5 O -0.398 6.398 6 O -0.319 6.319 7 C -0.145 4.145 8 C -0.093 4.093 9 N -0.236 5.236 10 C -0.073 4.073 11 C -0.007 4.007 12 C -0.561 4.561 13 H 0.071 0.929 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.089 4.089 21 H 0.077 0.923 22 H 0.094 0.906 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.260 0.740 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.034 0.966 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.945 -8.234 -8.324 18.985 hybrid contribution 0.609 1.575 -1.302 2.132 sum -14.335 -6.659 -9.626 18.507 Atomic orbital electron populations 1.22069 0.94808 1.01503 1.03665 1.21574 0.96794 0.92560 1.03323 1.21484 0.97098 0.96133 0.91588 1.23429 0.79838 0.77100 0.86439 1.90709 1.58378 1.44986 1.45732 1.84677 1.25669 1.71197 1.50354 1.22659 0.98209 0.99140 0.94505 1.23267 0.89342 0.94340 1.02370 1.64956 1.03690 1.28324 1.26613 1.22534 0.89365 0.94379 1.01066 1.19036 0.95299 0.95922 0.90419 1.21171 1.09358 1.32296 0.93317 0.92858 1.24982 0.97586 0.96489 0.95181 1.69966 1.39963 1.44931 0.98450 0.86656 0.83621 0.80467 0.77235 1.20318 1.21268 1.20221 1.23035 0.89900 1.01519 0.94442 0.92260 0.90602 0.92906 0.91672 0.89669 0.73998 0.89098 0.90626 0.89010 0.94050 0.91969 0.95820 0.96616 0.95668 0.92973 0.91592 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.16 37.16 0.34 -1.08 16 2 C -0.10 -1.06 4.66 -26.73 -0.12 -1.18 16 3 C -0.06 -0.78 0.66 -154.30 -0.10 -0.88 16 4 C 0.49 6.34 6.82 36.01 0.25 6.59 16 5 O -0.51 -8.40 15.99 -18.74 -0.30 -8.70 16 6 O -0.51 -4.65 10.12 -39.26 -0.40 -5.04 16 7 C -0.11 -1.37 5.19 -24.87 -0.13 -1.49 16 8 C 0.03 0.59 5.81 -1.89 -0.01 0.58 16 9 N -0.51 -9.58 5.26 -230.45 -1.21 -10.79 16 10 C 0.05 1.19 4.63 -3.83 -0.02 1.17 16 11 C 0.03 0.82 5.03 -27.89 -0.14 0.68 16 12 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 16 Si 0.89 22.01 29.54 -169.99 -5.02 16.98 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.04 0.62 5.95 -2.75 -0.02 0.60 16 21 H 0.06 0.51 7.35 -51.93 -0.38 0.13 16 22 H 0.08 0.67 5.30 -51.93 -0.28 0.39 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.08 0.85 8.11 -51.93 -0.42 0.43 16 26 H 0.40 2.08 9.10 45.56 0.41 2.50 16 27 H 0.09 1.06 7.78 -51.93 -0.40 0.65 16 28 H 0.08 0.86 7.74 -51.93 -0.40 0.46 16 29 H 0.09 1.62 7.76 -51.93 -0.40 1.21 16 30 H 0.04 0.74 7.85 -51.93 -0.41 0.33 16 31 H 0.06 1.36 8.11 -51.93 -0.42 0.94 16 32 H 0.02 0.54 7.90 -51.93 -0.41 0.13 16 33 H 0.02 0.43 7.25 -51.93 -0.38 0.06 16 34 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.07 1.16 6.05 -51.93 -0.31 0.85 16 37 H 0.08 1.23 7.69 -51.93 -0.40 0.83 16 LS Contribution 296.47 15.07 4.47 4.47 Total: -1.00 -32.88 296.47 -7.10 -39.99 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -5.01 Total: -1.58 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -0.37 Total: -8.87 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: -0.48 Total: -37.24 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.70 Total: -13.75 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.88 -7.10 -39.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062937392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.509 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds