Wall clock time and date at job start Mon Mar 30 2020 03:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47535 * 179.97438 * 10 9 7 12 12 N 1.46893 * 109.47638 * 179.97438 * 11 10 9 13 13 C 1.47446 * 110.99930 * 69.86956 * 12 11 10 14 14 C 1.54316 * 107.22998 * 123.26127 * 13 12 11 15 15 C 1.55138 * 103.02043 * 22.28494 * 14 13 12 16 16 H 1.09004 * 110.99068 * 82.47993 * 15 14 13 17 17 C 1.53009 * 110.98912 * 206.25226 * 15 14 13 18 18 C 1.50700 * 109.46993 * 293.54727 * 17 15 14 19 19 O 1.20822 * 120.00212 * 0.02562 * 18 17 15 20 20 O 1.34236 * 119.99419 * 180.02562 * 18 17 15 21 21 C 1.47840 * 111.00583 * 190.71395 * 12 11 10 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 24 24 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 25 25 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 26 26 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 27 27 H 1.09005 * 109.46889 * 299.99675 * 11 10 9 28 28 H 1.09004 * 109.47073 * 59.99170 * 11 10 9 29 29 H 1.09004 * 109.88614 * 242.66422 * 13 12 11 30 30 H 1.08996 * 109.88887 * 3.69253 * 13 12 11 31 31 H 1.09005 * 110.70547 * 140.66645 * 14 13 12 32 32 H 1.09000 * 110.70731 * 263.89669 * 14 13 12 33 33 H 1.09002 * 109.46469 * 53.54740 * 17 15 14 34 34 H 1.08997 * 109.46985 * 173.54511 * 17 15 14 35 35 H 0.96704 * 116.99260 * 180.02562 * 20 18 17 36 36 H 1.09002 * 110.37077 * 332.46649 * 21 12 11 37 37 H 1.09000 * 110.37461 * 94.80076 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 7 6.0412 -4.0216 -0.0022 13 6 5.7707 -4.6770 -1.2949 14 6 7.1233 -5.1726 -1.8481 15 6 8.0052 -5.2740 -0.5758 16 1 7.8278 -6.2131 -0.0515 17 6 9.4871 -5.1144 -0.9219 18 6 9.9376 -6.2870 -1.7544 19 8 9.1538 -7.1605 -2.0418 20 8 11.2096 -6.3611 -2.1766 21 6 7.4964 -4.0693 0.2543 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6797 -0.8895 24 1 3.8746 -0.6808 0.8905 25 1 3.6579 -3.1514 0.8880 26 1 3.6585 -3.1495 -0.8920 27 1 5.9148 -2.1220 -0.8910 28 1 5.9149 -2.1236 0.8890 29 1 5.0978 -5.5220 -1.1486 30 1 5.3238 -3.9628 -1.9864 31 1 7.0125 -6.1494 -2.3190 32 1 7.5407 -4.4505 -2.5498 33 1 9.6313 -4.1923 -1.4849 34 1 10.0725 -5.0746 -0.0034 35 1 11.4516 -7.1318 -2.7081 36 1 7.9716 -3.1481 -0.0831 37 1 7.6897 -4.2305 1.3149 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084380594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:07 Heat of formation + Delta-G solvation = -107.051117 kcal Electronic energy + Delta-G solvation = -17062.408860 eV Core-core repulsion = 14224.826855 eV Total energy + Delta-G solvation = -2837.582005 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.68963 -38.97740 -36.48034 -34.75500 -32.96958 -31.39316 -29.69106 -27.88360 -25.96752 -22.90032 -22.30440 -20.72815 -20.41105 -19.50365 -18.34993 -17.10406 -16.65955 -16.28819 -15.75727 -15.39729 -14.29864 -14.10933 -13.68131 -13.53709 -13.26815 -13.04267 -12.72984 -12.38185 -12.16627 -11.83453 -11.58187 -11.35337 -11.20692 -11.11157 -10.88939 -10.76448 -10.74411 -10.51850 -9.89080 -9.66729 -9.53796 -9.13461 -8.50346 -8.10864 -6.00665 -3.98135 1.89937 2.69615 3.32502 3.39506 3.43141 4.04047 4.43554 4.48014 4.55696 4.60370 4.92921 5.11746 5.17086 5.25033 5.32923 5.34074 5.56192 5.61485 5.70299 5.75467 5.88003 6.03692 6.06055 6.19273 6.20730 6.28788 6.58556 6.61580 6.95156 7.18398 7.30019 7.40848 7.50966 7.57047 7.84267 8.59294 9.05441 9.62010 11.13038 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.058101 B = 0.003712 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.805675 B = 7540.720205 C = 7740.889641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.266 1.266 6 H -0.288 1.288 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.097 4.097 11 C 0.049 3.951 12 N -0.529 5.529 13 C 0.041 3.959 14 C -0.137 4.137 15 C -0.088 4.088 16 H 0.094 0.906 17 C -0.105 4.105 18 C 0.477 3.523 19 O -0.509 6.509 20 O -0.521 6.521 21 C 0.048 3.952 22 H 0.262 0.738 23 H 0.012 0.988 24 H 0.011 0.989 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.029 0.971 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.409 0.591 36 H 0.046 0.954 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.826 -10.318 -2.969 25.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.191 1.191 6 H -0.215 1.215 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.134 4.134 11 C -0.078 4.078 12 N -0.253 5.253 13 C -0.086 4.086 14 C -0.175 4.175 15 C -0.107 4.107 16 H 0.112 0.888 17 C -0.142 4.142 18 C 0.320 3.680 19 O -0.397 6.397 20 O -0.334 6.334 21 C -0.080 4.080 22 H 0.072 0.928 23 H 0.031 0.969 24 H 0.029 0.971 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.268 0.732 36 H 0.065 0.935 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 22.057 -10.344 -2.414 24.482 hybrid contribution 0.931 0.891 -1.015 1.640 sum 22.989 -9.454 -3.430 25.092 Atomic orbital electron populations 1.69924 1.06300 1.26795 1.51436 1.25052 0.94734 0.99167 0.94692 0.86761 0.80294 0.83643 0.78460 1.20305 1.19119 1.21453 1.21163 0.89552 0.94455 1.50392 0.91017 1.19556 0.97159 0.92404 0.96000 1.21453 0.90915 0.99379 1.01703 1.22496 0.98246 0.87080 1.00016 1.63611 1.12649 1.17842 1.31167 1.22849 0.96594 0.99345 0.89856 1.22899 0.95673 1.02203 0.96721 1.22173 0.90953 1.00277 0.97314 0.88801 1.21374 0.97605 0.95192 1.00076 1.23565 0.79193 0.87544 0.77738 1.90734 1.54178 1.40312 1.54426 1.84549 1.30944 1.50882 1.66982 1.23049 0.88715 0.96137 1.00128 0.92802 0.96948 0.97111 0.92003 0.92909 0.95237 0.91346 0.90484 0.92108 0.89877 0.92018 0.87589 0.87333 0.73226 0.93525 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.44 13.96 55.43 0.77 -27.66 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.52 -15.11 9.66 -34.44 -0.33 -15.45 16 8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -1.97 5.18 -26.73 -0.14 -2.11 16 11 C 0.05 0.81 4.54 -3.83 -0.02 0.80 16 12 N -0.53 -7.73 5.16 -231.26 -1.19 -8.92 16 13 C 0.04 0.57 6.21 -2.84 -0.02 0.55 16 14 C -0.14 -1.55 5.66 -24.91 -0.14 -1.69 16 15 C -0.09 -0.87 2.62 -88.48 -0.23 -1.10 16 16 H 0.09 1.02 8.07 -51.93 -0.42 0.60 16 17 C -0.10 -0.76 5.33 -27.88 -0.15 -0.91 16 18 C 0.48 4.16 8.12 36.01 0.29 4.45 16 19 O -0.51 -6.08 15.39 -18.75 -0.29 -6.37 16 20 O -0.52 -3.38 13.42 -39.27 -0.53 -3.91 16 21 C 0.05 0.53 6.15 -2.31 -0.01 0.52 16 22 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 23 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 24 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 25 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.05 1.09 7.14 -51.93 -0.37 0.72 16 27 H 0.03 0.48 7.96 -51.93 -0.41 0.07 16 28 H 0.07 1.09 8.07 -51.93 -0.42 0.67 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.89 6.91 -51.93 -0.36 0.53 16 31 H 0.08 1.00 7.22 -51.93 -0.37 0.62 16 32 H 0.06 0.66 8.01 -51.93 -0.42 0.24 16 33 H 0.11 0.67 8.11 -51.93 -0.42 0.25 16 34 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.41 1.07 9.10 45.56 0.41 1.48 16 36 H 0.05 0.48 7.70 -51.93 -0.40 0.08 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 301.05 15.07 4.54 4.54 Total: -1.00 -33.77 301.05 -7.55 -41.32 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -5.22 Total: -2.77 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -0.96 Total: -13.58 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.42 Total: -36.58 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.82 Total: -10.28 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.77 -7.55 -41.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084380594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.729 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds