Wall clock time and date at job start Mon Mar 30 2020 03:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47535 * 179.97438 * 10 9 7 12 12 N 1.46893 * 109.47638 * 179.97438 * 11 10 9 13 13 C 1.47446 * 110.99930 * 69.86956 * 12 11 10 14 14 C 1.54316 * 107.22998 * 123.26127 * 13 12 11 15 15 C 1.55138 * 103.02043 * 22.28494 * 14 13 12 16 16 H 1.09004 * 110.99068 * 82.47993 * 15 14 13 17 17 C 1.53009 * 110.98912 * 206.25226 * 15 14 13 18 18 C 1.50700 * 109.46993 * 293.54727 * 17 15 14 19 19 O 1.20822 * 120.00212 * 0.02562 * 18 17 15 20 20 O 1.34236 * 119.99419 * 180.02562 * 18 17 15 21 21 C 1.47840 * 111.00583 * 190.71395 * 12 11 10 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 24 24 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 25 25 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 26 26 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 27 27 H 1.09005 * 109.46889 * 299.99675 * 11 10 9 28 28 H 1.09004 * 109.47073 * 59.99170 * 11 10 9 29 29 H 1.09004 * 109.88614 * 242.66422 * 13 12 11 30 30 H 1.08996 * 109.88887 * 3.69253 * 13 12 11 31 31 H 1.09005 * 110.70547 * 140.66645 * 14 13 12 32 32 H 1.09000 * 110.70731 * 263.89669 * 14 13 12 33 33 H 1.09002 * 109.46469 * 53.54740 * 17 15 14 34 34 H 1.08997 * 109.46985 * 173.54511 * 17 15 14 35 35 H 0.96704 * 116.99260 * 180.02562 * 20 18 17 36 36 H 1.09002 * 110.37077 * 332.46649 * 21 12 11 37 37 H 1.09000 * 110.37461 * 94.80076 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 7 6.0412 -4.0216 -0.0022 13 6 5.7707 -4.6770 -1.2949 14 6 7.1233 -5.1726 -1.8481 15 6 8.0052 -5.2740 -0.5758 16 1 7.8278 -6.2131 -0.0515 17 6 9.4871 -5.1144 -0.9219 18 6 9.9376 -6.2870 -1.7544 19 8 9.1538 -7.1605 -2.0418 20 8 11.2096 -6.3611 -2.1766 21 6 7.4964 -4.0693 0.2543 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6797 -0.8895 24 1 3.8746 -0.6808 0.8905 25 1 3.6579 -3.1514 0.8880 26 1 3.6585 -3.1495 -0.8920 27 1 5.9148 -2.1220 -0.8910 28 1 5.9149 -2.1236 0.8890 29 1 5.0978 -5.5220 -1.1486 30 1 5.3238 -3.9628 -1.9864 31 1 7.0125 -6.1494 -2.3190 32 1 7.5407 -4.4505 -2.5498 33 1 9.6313 -4.1923 -1.4849 34 1 10.0725 -5.0746 -0.0034 35 1 11.4516 -7.1318 -2.7081 36 1 7.9716 -3.1481 -0.0831 37 1 7.6897 -4.2305 1.3149 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084380594.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:06 Heat of formation + Delta-G solvation = -131.645472 kcal Electronic energy + Delta-G solvation = -17063.475351 eV Core-core repulsion = 14224.826855 eV Total energy + Delta-G solvation = -2838.648496 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.37204 -39.94785 -37.13152 -36.26408 -34.64834 -32.98324 -30.79708 -29.11947 -27.34509 -24.45621 -23.05397 -22.21631 -21.44993 -20.67905 -18.97307 -18.85948 -17.84834 -16.95795 -16.68214 -16.65472 -16.04466 -15.60614 -14.92233 -14.63840 -14.44819 -14.12380 -13.92901 -13.69589 -13.30463 -13.24160 -12.72689 -12.56069 -12.48488 -12.28082 -12.09732 -11.92547 -11.74671 -11.59093 -11.47316 -11.44306 -11.34412 -11.21857 -10.75707 -9.21168 -8.28871 -6.33600 1.27833 1.36751 1.39313 1.51497 2.17391 2.37507 3.04097 3.06288 3.64330 3.71204 3.80634 4.19041 4.25772 4.27429 4.34260 4.46592 4.61448 4.63261 4.71581 4.73645 4.82893 4.91497 4.95241 5.00342 5.04843 5.08876 5.21592 5.36237 5.53415 5.61340 5.67212 5.68951 6.09580 6.18821 6.31692 6.74997 7.04922 7.30958 8.88492 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.058101 B = 0.003712 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.805675 B = 7540.720205 C = 7740.889641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.001 4.001 3 Si 0.958 3.042 4 H -0.264 1.264 5 H -0.244 1.244 6 H -0.284 1.284 7 C -0.535 4.535 8 H 0.025 0.975 9 C -0.009 4.009 10 C -0.089 4.089 11 C 0.062 3.938 12 N -0.546 5.546 13 C 0.039 3.961 14 C -0.129 4.129 15 C -0.080 4.080 16 H 0.081 0.919 17 C -0.100 4.100 18 C 0.481 3.519 19 O -0.550 6.550 20 O -0.516 6.516 21 C 0.048 3.952 22 H 0.266 0.734 23 H 0.020 0.980 24 H 0.022 0.978 25 H 0.045 0.955 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.124 0.876 34 H 0.136 0.864 35 H 0.425 0.575 36 H 0.064 0.936 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.299 -8.947 -2.833 27.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.197 4.197 3 Si 0.780 3.220 4 H -0.189 1.189 5 H -0.167 1.167 6 H -0.210 1.210 7 C -0.573 4.573 8 H 0.044 0.956 9 C -0.047 4.047 10 C -0.127 4.127 11 C -0.066 4.066 12 N -0.270 5.270 13 C -0.089 4.089 14 C -0.168 4.168 15 C -0.099 4.099 16 H 0.100 0.900 17 C -0.137 4.137 18 C 0.325 3.675 19 O -0.441 6.441 20 O -0.330 6.330 21 C -0.079 4.079 22 H 0.075 0.925 23 H 0.038 0.962 24 H 0.041 0.959 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.142 0.858 34 H 0.154 0.846 35 H 0.287 0.713 36 H 0.082 0.918 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 25.575 -9.000 -2.283 27.208 hybrid contribution -0.207 0.338 -1.069 1.140 sum 25.368 -8.661 -3.352 27.015 Atomic orbital electron populations 1.70092 1.08494 1.28233 1.52771 1.26128 0.95696 1.03880 0.94003 0.85551 0.79456 0.77618 0.79352 1.18902 1.16687 1.21007 1.21535 0.92424 0.92961 1.50419 0.95624 1.19488 0.93646 0.94939 0.96579 1.21282 0.94330 0.96740 1.00331 1.22236 0.94831 0.88552 1.00953 1.63515 1.15439 1.16561 1.31523 1.22815 0.97850 0.98588 0.89642 1.22813 0.94658 1.01717 0.97577 1.22051 0.92642 0.99271 0.95931 0.90031 1.21379 0.95719 0.95235 1.01388 1.23807 0.79295 0.87232 0.77130 1.90735 1.55314 1.41906 1.56103 1.84509 1.29683 1.51845 1.66952 1.23136 0.86358 0.97320 1.01079 0.92486 0.96171 0.95943 0.93647 0.94189 0.94420 0.90126 0.91863 0.93342 0.90924 0.90919 0.85775 0.84630 0.71306 0.91772 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.53 13.96 21.45 0.30 -61.23 16 2 C 0.00 -0.06 5.47 84.66 0.46 0.41 16 3 Si 0.96 44.69 27.47 68.60 1.88 46.58 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.24 -10.40 6.54 99.48 0.65 -9.75 16 6 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.54 -32.08 9.66 25.60 0.25 -31.83 16 8 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 9 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 10 C -0.09 -3.64 5.18 30.59 0.16 -3.48 16 11 C 0.06 1.93 4.54 86.30 0.39 2.33 16 12 N -0.55 -15.18 5.16 -885.58 -4.57 -19.75 16 13 C 0.04 1.06 6.21 86.64 0.54 1.60 16 14 C -0.13 -2.78 5.66 31.77 0.18 -2.60 16 15 C -0.08 -1.40 2.62 -9.41 -0.02 -1.43 16 16 H 0.08 1.65 8.07 -2.38 -0.02 1.63 16 17 C -0.10 -1.11 5.33 29.85 0.16 -0.95 16 18 C 0.48 7.25 8.12 71.24 0.58 7.83 16 19 O -0.55 -12.55 15.39 21.98 0.34 -12.21 16 20 O -0.52 -5.26 13.42 -51.48 -0.69 -5.96 16 21 C 0.05 0.93 6.15 86.77 0.53 1.46 16 22 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 23 H 0.02 0.93 7.20 -2.38 -0.02 0.91 16 24 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 25 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 26 H 0.04 1.70 7.14 -2.39 -0.02 1.68 16 27 H 0.04 1.12 7.96 -2.38 -0.02 1.10 16 28 H 0.08 2.33 8.07 -2.38 -0.02 2.31 16 29 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.05 1.42 6.91 -2.39 -0.02 1.40 16 31 H 0.07 1.73 7.22 -2.38 -0.02 1.72 16 32 H 0.07 1.40 8.01 -2.39 -0.02 1.38 16 33 H 0.12 1.01 8.11 -2.39 -0.02 0.99 16 34 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.43 1.23 9.10 -74.05 -0.67 0.56 16 36 H 0.06 1.05 7.70 -2.39 -0.02 1.03 16 37 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -74.83 301.05 0.93 -73.90 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: 0.32 Total: 5.63 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: 3.35 Total: -26.96 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -4.27 Total: -80.98 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.35 Total: -18.17 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.58 kcal Total: -74.83 0.93 -73.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084380594.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.748 kcal (2) G-P(sol) polarization free energy of solvation -74.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds