Wall clock time and date at job start Mon Mar 30 2020 03:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00105 * 3 2 1 5 5 H 1.48496 * 109.47112 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99896 * 3 2 1 7 7 C 1.37885 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46891 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.47053 * 179.97438 * 11 10 9 13 13 C 1.48539 * 110.99911 * 52.60113 * 12 11 10 14 14 C 1.54934 * 103.22340 * 159.72267 * 13 12 11 15 15 C 1.54597 * 102.92270 * 322.58191 * 14 13 12 16 16 H 1.08997 * 110.39355 * 262.99648 * 15 14 13 17 17 C 1.53000 * 110.30553 * 140.87435 * 15 14 13 18 18 C 1.50703 * 109.47117 * 69.28859 * 17 15 14 19 19 O 1.20818 * 119.99959 * 359.97438 * 18 17 15 20 20 O 1.34233 * 119.99802 * 180.02562 * 18 17 15 21 21 C 1.47897 * 110.99785 * 169.99856 * 12 11 10 22 22 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46980 * 60.00263 * 9 7 2 24 24 H 1.09004 * 109.47113 * 300.00244 * 9 7 2 25 25 H 1.09001 * 109.47372 * 60.00128 * 10 9 7 26 26 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 27 27 H 1.08992 * 109.47056 * 59.99654 * 11 10 9 28 28 H 1.09004 * 109.47006 * 299.99770 * 11 10 9 29 29 H 1.08998 * 110.66256 * 278.15595 * 13 12 11 30 30 H 1.08992 * 110.66782 * 41.28665 * 13 12 11 31 31 H 1.09000 * 110.72116 * 204.22504 * 14 13 12 32 32 H 1.08998 * 110.72349 * 80.94448 * 14 13 12 33 33 H 1.08997 * 109.47287 * 189.28393 * 17 15 14 34 34 H 1.08998 * 109.47647 * 309.28734 * 17 15 14 35 35 H 0.96700 * 116.99847 * 180.02562 * 20 18 17 36 36 H 1.08997 * 109.92311 * 333.50472 * 21 12 11 37 37 H 1.08999 * 109.91892 * 94.80211 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4799 -4.9871 -0.0012 12 7 2.4345 -6.1038 -0.0018 13 6 3.4206 -5.9617 1.0999 14 6 3.9645 -7.4016 1.2767 15 6 2.7098 -8.2755 1.0483 16 1 2.2597 -8.5504 2.0022 17 6 3.0745 -9.5306 0.2529 18 6 3.9181 -10.4401 1.1086 19 8 4.1992 -10.1174 2.2384 20 8 4.3581 -11.6083 0.6151 21 6 1.7453 -7.3903 0.2374 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6245 -2.5571 0.8897 25 1 2.8717 -3.6045 0.8895 26 1 2.8717 -3.6044 -0.8906 27 1 0.8536 -5.0445 -0.8913 28 1 0.8530 -5.0451 0.8886 29 1 4.2217 -5.2803 0.8135 30 1 2.9317 -5.6204 2.0122 31 1 4.3563 -7.5450 2.2837 32 1 4.7278 -7.6200 0.5299 33 1 2.1635 -10.0513 -0.0421 34 1 3.6351 -9.2464 -0.6376 35 1 4.8956 -12.1581 1.2016 36 1 0.8302 -7.2215 0.8050 37 1 1.5124 -7.8693 -0.7137 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084380595.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:08 Heat of formation + Delta-G solvation = -110.342797 kcal Electronic energy + Delta-G solvation = -17034.925240 eV Core-core repulsion = 14197.200497 eV Total energy + Delta-G solvation = -2837.724743 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.63460 -38.90447 -36.42230 -34.70307 -32.97943 -31.11285 -29.61437 -27.59239 -25.69546 -23.07677 -22.15761 -21.16053 -20.01560 -19.54909 -18.28903 -17.02608 -16.34032 -16.18489 -15.38166 -15.23199 -14.48754 -14.34408 -13.84856 -13.37453 -13.29987 -12.74165 -12.35712 -12.25374 -11.87097 -11.67804 -11.45665 -11.28634 -11.14238 -10.91966 -10.77361 -10.72022 -10.66472 -10.51212 -10.35994 -9.64340 -9.31135 -9.04009 -8.31790 -8.14011 -5.97289 -3.99348 1.96509 2.77926 3.35484 3.39455 3.42289 4.26588 4.39621 4.48975 4.54030 4.74879 5.03460 5.18186 5.28573 5.38427 5.39730 5.45367 5.63405 5.76533 5.80608 5.82283 5.96939 6.10204 6.14317 6.21814 6.25974 6.33282 6.70265 6.81046 7.06077 7.24779 7.39908 7.63032 7.70528 7.85788 8.03107 8.46447 9.07617 9.64445 11.14179 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.068350 B = 0.003512 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.558632 B = 7970.704042 C = 8195.094363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.109 4.109 11 C 0.047 3.953 12 N -0.518 5.518 13 C 0.035 3.965 14 C -0.116 4.116 15 C -0.089 4.089 16 H 0.083 0.917 17 C -0.104 4.104 18 C 0.477 3.523 19 O -0.512 6.512 20 O -0.521 6.521 21 C 0.038 3.962 22 H 0.261 0.739 23 H 0.016 0.984 24 H 0.013 0.987 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.030 0.970 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.408 0.592 36 H 0.048 0.952 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.034 -21.409 0.977 22.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.147 4.147 11 C -0.081 4.081 12 N -0.242 5.242 13 C -0.092 4.092 14 C -0.154 4.154 15 C -0.108 4.108 16 H 0.102 0.898 17 C -0.141 4.141 18 C 0.319 3.681 19 O -0.400 6.400 20 O -0.333 6.333 21 C -0.090 4.090 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.031 0.969 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.049 0.951 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.267 0.733 36 H 0.066 0.934 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.954 -20.933 0.513 21.770 hybrid contribution 0.287 0.585 1.185 1.352 sum 6.241 -20.348 1.697 21.351 Atomic orbital electron populations 1.69959 1.06066 1.26654 1.50961 1.25030 0.94849 0.99246 0.95381 0.86655 0.79576 0.83127 0.78626 1.20215 1.21318 1.20267 1.21223 0.93009 0.91083 1.50451 0.92745 1.19064 0.94007 0.91369 0.97082 1.21705 0.99256 0.92930 1.00773 1.22483 0.94131 0.91135 1.00337 1.64878 1.14843 1.01661 1.42820 1.23225 0.96214 0.96597 0.93186 1.22585 0.96464 0.94226 1.02133 1.21895 0.97217 0.93095 0.98604 0.89844 1.21529 0.99769 0.93966 0.98865 1.23670 0.77835 0.79951 0.86610 1.90727 1.55171 1.73684 1.20407 1.84556 1.66269 1.32162 1.50333 1.22927 0.95606 0.91152 0.99309 0.92988 0.96573 0.96865 0.93369 0.92609 0.91020 0.95134 0.89688 0.93562 0.90618 0.91217 0.87591 0.87028 0.73341 0.93414 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.30 4.81 -26.73 -0.13 -2.42 16 11 C 0.05 0.82 5.03 -3.82 -0.02 0.81 16 12 N -0.52 -7.80 5.40 -230.45 -1.24 -9.04 16 13 C 0.04 0.51 5.10 -1.90 -0.01 0.50 16 14 C -0.12 -1.38 5.70 -24.87 -0.14 -1.52 16 15 C -0.09 -0.94 2.60 -89.26 -0.23 -1.17 16 16 H 0.08 0.92 7.91 -51.93 -0.41 0.51 16 17 C -0.10 -0.84 4.97 -27.88 -0.14 -0.98 16 18 C 0.48 4.40 8.13 36.01 0.29 4.70 16 19 O -0.51 -6.34 15.77 -18.74 -0.30 -6.64 16 20 O -0.52 -3.63 13.42 -39.26 -0.53 -4.16 16 21 C 0.04 0.46 6.36 -2.75 -0.02 0.44 16 22 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 1.00 6.80 -51.93 -0.35 0.65 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.03 0.54 7.81 -51.93 -0.41 0.14 16 29 H 0.08 1.26 7.66 -51.93 -0.40 0.86 16 30 H 0.05 0.69 8.00 -51.93 -0.42 0.28 16 31 H 0.08 0.92 7.85 -51.93 -0.41 0.52 16 32 H 0.07 0.79 7.76 -51.93 -0.40 0.39 16 33 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.11 0.83 7.99 -51.93 -0.42 0.42 16 35 H 0.41 1.23 9.10 45.56 0.41 1.65 16 36 H 0.05 0.58 7.57 -51.93 -0.39 0.19 16 37 H 0.08 0.83 7.68 -51.93 -0.40 0.43 16 LS Contribution 303.89 15.07 4.58 4.58 Total: -1.00 -32.99 303.89 -7.96 -40.95 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -5.24 Total: -3.05 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -0.94 Total: -12.97 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: -0.51 Total: -35.64 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -0.82 Total: -10.80 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.99 -7.96 -40.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084380595.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.393 kcal (2) G-P(sol) polarization free energy of solvation -32.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds