Wall clock time and date at job start Mon Mar 30 2020 03:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00105 * 3 2 1 5 5 H 1.48496 * 109.47112 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99896 * 3 2 1 7 7 C 1.37885 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46891 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.47053 * 179.97438 * 11 10 9 13 13 C 1.48539 * 110.99911 * 52.60113 * 12 11 10 14 14 C 1.54934 * 103.22340 * 159.72267 * 13 12 11 15 15 C 1.54597 * 102.92270 * 322.58191 * 14 13 12 16 16 H 1.08997 * 110.39355 * 262.99648 * 15 14 13 17 17 C 1.53000 * 110.30553 * 140.87435 * 15 14 13 18 18 C 1.50703 * 109.47117 * 69.28859 * 17 15 14 19 19 O 1.20818 * 119.99959 * 359.97438 * 18 17 15 20 20 O 1.34233 * 119.99802 * 180.02562 * 18 17 15 21 21 C 1.47897 * 110.99785 * 169.99856 * 12 11 10 22 22 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46980 * 60.00263 * 9 7 2 24 24 H 1.09004 * 109.47113 * 300.00244 * 9 7 2 25 25 H 1.09001 * 109.47372 * 60.00128 * 10 9 7 26 26 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 27 27 H 1.08992 * 109.47056 * 59.99654 * 11 10 9 28 28 H 1.09004 * 109.47006 * 299.99770 * 11 10 9 29 29 H 1.08998 * 110.66256 * 278.15595 * 13 12 11 30 30 H 1.08992 * 110.66782 * 41.28665 * 13 12 11 31 31 H 1.09000 * 110.72116 * 204.22504 * 14 13 12 32 32 H 1.08998 * 110.72349 * 80.94448 * 14 13 12 33 33 H 1.08997 * 109.47287 * 189.28393 * 17 15 14 34 34 H 1.08998 * 109.47647 * 309.28734 * 17 15 14 35 35 H 0.96700 * 116.99847 * 180.02562 * 20 18 17 36 36 H 1.08997 * 109.92311 * 333.50472 * 21 12 11 37 37 H 1.08999 * 109.91892 * 94.80211 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4799 -4.9871 -0.0012 12 7 2.4345 -6.1038 -0.0018 13 6 3.4206 -5.9617 1.0999 14 6 3.9645 -7.4016 1.2767 15 6 2.7098 -8.2755 1.0483 16 1 2.2597 -8.5504 2.0022 17 6 3.0745 -9.5306 0.2529 18 6 3.9181 -10.4401 1.1086 19 8 4.1992 -10.1174 2.2384 20 8 4.3581 -11.6083 0.6151 21 6 1.7453 -7.3903 0.2374 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6245 -2.5571 0.8897 25 1 2.8717 -3.6045 0.8895 26 1 2.8717 -3.6044 -0.8906 27 1 0.8536 -5.0445 -0.8913 28 1 0.8530 -5.0451 0.8886 29 1 4.2217 -5.2803 0.8135 30 1 2.9317 -5.6204 2.0122 31 1 4.3563 -7.5450 2.2837 32 1 4.7278 -7.6200 0.5299 33 1 2.1635 -10.0513 -0.0421 34 1 3.6351 -9.2464 -0.6376 35 1 4.8956 -12.1581 1.2016 36 1 0.8302 -7.2215 0.8050 37 1 1.5124 -7.8693 -0.7137 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084380595.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:08 Heat of formation + Delta-G solvation = -133.490193 kcal Electronic energy + Delta-G solvation = -17035.928986 eV Core-core repulsion = 14197.200497 eV Total energy + Delta-G solvation = -2838.728489 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.37035 -39.95075 -37.12405 -36.27845 -34.69813 -32.68289 -30.77096 -28.88480 -27.22418 -24.72635 -23.06085 -22.54501 -21.22670 -20.72898 -18.96277 -18.51418 -17.75324 -16.95536 -16.71860 -16.36441 -16.31356 -15.73932 -14.91268 -14.54541 -14.30890 -14.05927 -13.95999 -13.52656 -13.24701 -12.87461 -12.84608 -12.53529 -12.46806 -12.33677 -12.20879 -12.06212 -11.85802 -11.58367 -11.48435 -11.46229 -11.32308 -11.08427 -10.55200 -9.35873 -8.20541 -6.31765 1.29186 1.39646 1.43025 1.50963 2.20653 2.40822 3.09283 3.12426 3.58127 3.66968 3.85167 4.21371 4.24598 4.35375 4.36727 4.47947 4.56727 4.70902 4.72497 4.76854 4.84283 4.93919 5.00310 5.05076 5.12988 5.13805 5.22370 5.31215 5.50880 5.69419 5.73150 5.84736 5.99487 6.07918 6.27021 6.84763 7.06384 7.37404 8.91275 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.068350 B = 0.003512 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.558632 B = 7970.704042 C = 8195.094363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.093 4.093 11 C 0.058 3.942 12 N -0.522 5.522 13 C 0.031 3.969 14 C -0.108 4.108 15 C -0.082 4.082 16 H 0.078 0.922 17 C -0.100 4.100 18 C 0.482 3.518 19 O -0.551 6.551 20 O -0.516 6.516 21 C 0.037 3.963 22 H 0.264 0.736 23 H -0.007 1.007 24 H -0.011 1.011 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.025 0.975 29 H 0.076 0.924 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.124 0.876 35 H 0.425 0.575 36 H 0.045 0.955 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.037 -22.431 0.384 23.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.131 4.131 11 C -0.070 4.070 12 N -0.246 5.246 13 C -0.097 4.097 14 C -0.146 4.146 15 C -0.101 4.101 16 H 0.096 0.904 17 C -0.137 4.137 18 C 0.327 3.673 19 O -0.441 6.441 20 O -0.330 6.330 21 C -0.090 4.090 22 H 0.073 0.927 23 H 0.012 0.988 24 H 0.007 0.993 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.150 0.850 34 H 0.142 0.858 35 H 0.287 0.713 36 H 0.064 0.936 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.973 -21.998 -0.089 23.077 hybrid contribution -0.032 0.835 1.368 1.603 sum 6.941 -21.163 1.278 22.309 Atomic orbital electron populations 1.70091 1.07807 1.27872 1.51617 1.25998 0.95802 1.03404 0.94662 0.85493 0.78290 0.78010 0.79220 1.19087 1.20700 1.19212 1.21674 0.93516 0.92460 1.50681 0.92321 1.18962 0.94373 0.93061 0.94719 1.21450 0.98073 0.92998 1.00594 1.22220 0.94042 0.90581 1.00162 1.64859 1.14508 1.01996 1.43259 1.23246 0.95828 0.98198 0.92406 1.22511 0.97242 0.92720 1.02127 1.21788 0.95936 0.93790 0.98618 0.90374 1.21518 1.01021 0.92800 0.98381 1.23809 0.77250 0.80299 0.85984 1.90726 1.56733 1.74624 1.22045 1.84513 1.66257 1.31567 1.50617 1.23034 0.95534 0.89756 1.00719 0.92720 0.98828 0.99303 0.93294 0.92858 0.90960 0.95648 0.90556 0.94782 0.91117 0.90383 0.84963 0.85783 0.71323 0.93647 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.77 13.29 21.45 0.28 -57.48 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 3 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.55 -31.90 9.11 25.60 0.23 -31.67 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 9 C 0.03 1.44 4.97 29.85 0.15 1.58 16 10 C -0.09 -3.99 4.81 30.59 0.15 -3.85 16 11 C 0.06 2.05 5.03 86.30 0.43 2.49 16 12 N -0.52 -15.18 5.40 -883.01 -4.76 -19.95 16 13 C 0.03 0.87 5.10 86.65 0.44 1.31 16 14 C -0.11 -2.43 5.70 31.80 0.18 -2.25 16 15 C -0.08 -1.57 2.60 -9.91 -0.03 -1.60 16 16 H 0.08 1.61 7.91 -2.39 -0.02 1.59 16 17 C -0.10 -1.31 4.97 29.85 0.15 -1.17 16 18 C 0.48 7.80 8.13 71.24 0.58 8.38 16 19 O -0.55 -12.91 15.77 21.99 0.35 -12.56 16 20 O -0.52 -5.79 13.42 -51.44 -0.69 -6.48 16 21 C 0.04 0.81 6.36 86.45 0.55 1.36 16 22 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 23 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 24 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 25 H 0.05 2.06 6.80 -2.39 -0.02 2.05 16 26 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 27 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.03 0.92 7.81 -2.38 -0.02 0.90 16 29 H 0.08 2.25 7.66 -2.39 -0.02 2.23 16 30 H 0.03 1.03 8.00 -2.39 -0.02 1.01 16 31 H 0.07 1.68 7.85 -2.39 -0.02 1.66 16 32 H 0.08 1.63 7.76 -2.39 -0.02 1.61 16 33 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.12 1.40 7.99 -2.39 -0.02 1.38 16 35 H 0.43 1.54 9.10 -74.06 -0.67 0.87 16 36 H 0.05 1.03 7.57 -2.39 -0.02 1.01 16 37 H 0.10 1.79 7.68 -2.39 -0.02 1.77 16 Total: -1.00 -71.14 303.89 0.87 -70.26 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 0.37 Total: 4.22 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: 3.30 Total: -25.00 kcal Atomic # 7 Polarization: -72.95 SS G_CDS: -4.48 Total: -77.43 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.34 Total: -19.04 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -71.14 0.87 -70.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084380595.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.226 kcal (2) G-P(sol) polarization free energy of solvation -71.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds