Wall clock time and date at job start Mon Mar 30 2020 03:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.45403 * 2 1 4 4 O 1.20827 * 119.99896 * 252.51102 * 3 2 1 5 5 O 1.34225 * 120.00366 * 72.51091 * 3 2 1 6 6 C 1.53028 * 109.46406 * 240.02001 * 2 1 3 7 7 C 1.53117 * 109.28016 * 299.16690 * 6 2 1 8 8 C 1.53124 * 109.15860 * 302.34366 * 7 6 2 9 9 C 1.53034 * 109.27757 * 57.65910 * 8 7 6 10 10 N 1.46847 * 109.52045 * 300.81938 * 9 8 7 11 11 C 1.46898 * 111.00235 * 185.84330 * 10 9 8 12 12 C 1.53001 * 109.47308 * 50.78790 * 11 10 9 13 13 C 1.50700 * 109.47461 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99882 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00150 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00272 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00017 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47364 * 180.02562 * 17 15 13 19 19 H 1.48494 * 109.47470 * 59.99436 * 17 15 13 20 20 H 1.48510 * 109.46991 * 299.99315 * 17 15 13 21 21 H 1.09005 * 109.47458 * 300.03351 * 1 2 3 22 22 H 1.09005 * 109.46475 * 60.02994 * 1 2 3 23 23 H 1.08997 * 109.47165 * 180.02562 * 1 2 3 24 24 H 0.96700 * 117.00121 * 180.02562 * 5 3 2 25 25 H 1.09000 * 109.50142 * 179.22650 * 6 2 1 26 26 H 1.08999 * 109.53767 * 59.12446 * 6 2 1 27 27 H 1.09001 * 109.52308 * 182.44022 * 7 6 2 28 28 H 1.09000 * 109.52527 * 62.25012 * 7 6 2 29 29 H 1.08994 * 109.50290 * 297.71311 * 8 7 6 30 30 H 1.09005 * 109.50118 * 177.59738 * 8 7 6 31 31 H 1.09001 * 109.46277 * 180.80526 * 9 8 7 32 32 H 1.08998 * 109.45644 * 60.82303 * 9 8 7 33 33 H 1.09008 * 109.46960 * 290.79305 * 11 10 9 34 34 H 1.08996 * 109.47835 * 170.79302 * 11 10 9 35 35 H 1.09008 * 109.46689 * 60.00350 * 12 11 10 36 36 H 1.08998 * 109.47593 * 300.00860 * 12 11 10 37 37 H 0.97000 * 119.99736 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0320 1.4209 0.0000 4 8 2.5297 1.8858 -0.9980 5 8 1.9261 2.1702 1.1086 6 6 2.0400 -0.7210 -1.2498 7 6 1.5443 -2.1696 -1.2353 8 6 2.0269 -2.8531 0.0471 9 6 1.5173 -2.0704 1.2593 10 7 2.0192 -0.6917 1.1995 11 6 1.6650 0.0508 2.4166 12 6 2.0797 -0.7588 3.6468 13 6 1.7159 0.0026 4.8954 14 1 1.2364 0.9672 4.8191 15 6 1.9951 -0.5324 6.1350 16 7 2.5786 -1.7074 6.2280 17 14 1.5434 0.4110 7.6827 18 1 1.9472 -0.3742 8.8767 19 1 0.0765 0.6396 7.7127 20 1 2.2484 1.7182 7.6890 21 1 -0.3634 0.5144 0.8897 22 1 -0.3632 0.5134 -0.8903 23 1 -0.3633 -1.0276 0.0005 24 1 2.2617 3.0758 1.0602 25 1 3.1299 -0.7093 -1.2574 26 1 1.6644 -0.2168 -2.1402 27 1 1.9410 -2.6990 -2.1017 28 1 0.4548 -2.1822 -1.2670 29 1 3.1166 -2.8750 0.0598 30 1 1.6415 -3.8721 0.0835 31 1 1.8711 -2.5463 2.1739 32 1 0.4274 -2.0606 1.2531 33 1 0.5883 0.2196 2.4388 34 1 2.1832 1.0097 2.4211 35 1 3.1564 -0.9276 3.6245 36 1 1.5615 -1.7177 3.6424 37 1 2.8128 -2.1975 5.4243 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127605734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:08 Heat of formation + Delta-G solvation = -94.292553 kcal Electronic energy + Delta-G solvation = -18607.549126 eV Core-core repulsion = 15770.520374 eV Total energy + Delta-G solvation = -2837.028752 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.89205 -38.62635 -36.18429 -34.36295 -32.80213 -32.02029 -28.92067 -27.35978 -24.81715 -24.36224 -23.18580 -21.14159 -20.48062 -18.47976 -17.98633 -16.90538 -16.40521 -15.80909 -15.06143 -14.94049 -14.20466 -13.71753 -13.70930 -13.28170 -13.22333 -12.83954 -12.77511 -12.32364 -12.02241 -11.85573 -11.44286 -11.24774 -11.10302 -10.87934 -10.74292 -10.55766 -10.27205 -10.15384 -10.10324 -9.88237 -9.37129 -8.56034 -8.29466 -7.86547 -6.34396 -4.02732 2.29299 3.17189 3.44531 3.46567 3.65261 4.24058 4.57255 4.63897 4.85714 5.03569 5.11499 5.23085 5.37805 5.43213 5.49917 5.60660 5.67767 5.75405 5.91186 5.97645 6.01136 6.06518 6.19837 6.28073 6.36964 6.47726 6.56008 6.61841 6.97348 7.25962 7.37761 7.59081 7.68142 8.06035 8.26400 8.48729 8.90786 9.68989 11.06562 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029055 B = 0.007031 C = 0.006043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.452601 B = 3981.219867 C = 4632.013695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.119 3.881 3 C 0.499 3.501 4 O -0.523 6.523 5 O -0.491 6.491 6 C -0.094 4.094 7 C -0.120 4.120 8 C -0.120 4.120 9 C 0.049 3.951 10 N -0.524 5.524 11 C 0.050 3.950 12 C 0.011 3.989 13 C -0.599 4.599 14 H 0.048 0.952 15 C 0.015 3.985 16 N -0.913 5.913 17 Si 1.068 2.932 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.288 1.288 21 H 0.073 0.927 22 H 0.062 0.938 23 H 0.079 0.921 24 H 0.396 0.604 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.036 0.964 33 H 0.027 0.973 34 H 0.100 0.900 35 H 0.014 0.986 36 H 0.008 0.992 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.679 1.545 -13.623 14.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.028 3.972 3 C 0.341 3.659 4 O -0.411 6.411 5 O -0.302 6.302 6 C -0.132 4.132 7 C -0.157 4.157 8 C -0.158 4.158 9 C -0.078 4.078 10 N -0.251 5.251 11 C -0.075 4.075 12 C -0.026 4.026 13 C -0.638 4.638 14 H 0.067 0.933 15 C -0.189 4.189 16 N -0.550 5.550 17 Si 0.897 3.103 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.215 1.215 21 H 0.092 0.908 22 H 0.081 0.919 23 H 0.098 0.902 24 H 0.255 0.745 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.118 0.882 35 H 0.032 0.968 36 H 0.027 0.973 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.129 1.198 -12.242 12.692 hybrid contribution -0.736 0.793 -1.643 1.967 sum -3.864 1.991 -13.885 14.549 Atomic orbital electron populations 1.22505 0.94587 1.03951 1.03147 1.20916 0.94217 0.87132 0.94966 1.23356 0.74102 0.88508 0.79933 1.90660 1.41752 1.73848 1.34813 1.85013 1.77225 1.29284 1.38722 1.21472 1.02058 0.95043 0.94597 1.21637 1.00682 0.95079 0.98303 1.21661 1.01910 0.98262 0.93951 1.22251 0.97463 0.88627 0.99489 1.62399 1.58749 1.02400 1.01509 1.22786 0.98494 0.98615 0.87651 1.19343 0.96396 0.95082 0.91771 1.21990 1.43437 1.06302 0.92102 0.93334 1.25813 0.94525 0.96876 1.01646 1.70780 1.38511 1.12821 1.32842 0.83553 0.76086 0.75125 0.75556 1.20807 1.21542 1.21460 0.90848 0.91917 0.90191 0.74541 0.90561 0.90968 0.91543 0.91933 0.91053 0.91582 0.88820 0.94608 0.95522 0.88228 0.96804 0.97349 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 7.45 37.16 0.28 -2.21 16 2 C 0.12 1.83 0.66 -132.77 -0.09 1.74 16 3 C 0.50 8.06 7.10 36.00 0.26 8.31 16 4 O -0.52 -9.15 16.76 -18.75 -0.31 -9.47 16 5 O -0.49 -7.36 9.54 -39.25 -0.37 -7.74 16 6 C -0.09 -1.26 4.25 -26.66 -0.11 -1.37 16 7 C -0.12 -1.37 5.70 -26.61 -0.15 -1.53 16 8 C -0.12 -1.56 6.09 -26.65 -0.16 -1.73 16 9 C 0.05 0.80 4.71 -3.84 -0.02 0.78 16 10 N -0.52 -9.35 4.55 -220.35 -1.00 -10.35 16 11 C 0.05 1.05 3.97 -3.82 -0.02 1.03 16 12 C 0.01 0.29 3.74 -27.88 -0.10 0.18 16 13 C -0.60 -17.03 9.11 -34.44 -0.31 -17.34 16 14 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 15 C 0.02 0.44 5.46 -17.82 -0.10 0.34 16 16 N -0.91 -27.95 13.65 55.43 0.76 -27.20 16 17 Si 1.07 25.30 29.90 -169.99 -5.08 20.22 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 H 0.07 1.08 6.44 -51.93 -0.33 0.75 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.08 1.01 4.80 -51.93 -0.25 0.76 16 24 H 0.40 4.07 9.10 50.83 0.46 4.53 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.07 0.91 7.99 -51.93 -0.42 0.49 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.67 6.56 -51.93 -0.34 0.33 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.74 5.83 -51.93 -0.30 1.44 16 32 H 0.04 0.57 6.19 -51.93 -0.32 0.24 16 33 H 0.03 0.56 6.25 -51.92 -0.32 0.24 16 34 H 0.10 2.13 5.03 -47.01 -0.24 1.90 16 35 H 0.01 0.38 8.01 -51.92 -0.42 -0.04 16 36 H 0.01 0.22 6.05 -51.93 -0.31 -0.09 16 37 H 0.27 8.18 7.22 -40.82 -0.29 7.89 16 LS Contribution 281.89 15.07 4.25 4.25 Total: -1.00 -32.39 281.89 -6.70 -39.09 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -4.40 Total: 2.98 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -0.53 Total: -11.79 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.25 Total: -37.55 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.69 Total: -17.20 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.08 Total: 20.22 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.39 -6.70 -39.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127605734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.204 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds