Wall clock time and date at job start Mon Mar 30 2020 03:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.45403 * 2 1 4 4 O 1.20827 * 119.99896 * 252.51102 * 3 2 1 5 5 O 1.34225 * 120.00366 * 72.51091 * 3 2 1 6 6 C 1.53028 * 109.46406 * 240.02001 * 2 1 3 7 7 C 1.53117 * 109.28016 * 299.16690 * 6 2 1 8 8 C 1.53124 * 109.15860 * 302.34366 * 7 6 2 9 9 C 1.53034 * 109.27757 * 57.65910 * 8 7 6 10 10 N 1.46847 * 109.52045 * 300.81938 * 9 8 7 11 11 C 1.46898 * 111.00235 * 185.84330 * 10 9 8 12 12 C 1.53001 * 109.47308 * 50.78790 * 11 10 9 13 13 C 1.50700 * 109.47461 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99882 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00150 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00272 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00017 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47364 * 180.02562 * 17 15 13 19 19 H 1.48494 * 109.47470 * 59.99436 * 17 15 13 20 20 H 1.48510 * 109.46991 * 299.99315 * 17 15 13 21 21 H 1.09005 * 109.47458 * 300.03351 * 1 2 3 22 22 H 1.09005 * 109.46475 * 60.02994 * 1 2 3 23 23 H 1.08997 * 109.47165 * 180.02562 * 1 2 3 24 24 H 0.96700 * 117.00121 * 180.02562 * 5 3 2 25 25 H 1.09000 * 109.50142 * 179.22650 * 6 2 1 26 26 H 1.08999 * 109.53767 * 59.12446 * 6 2 1 27 27 H 1.09001 * 109.52308 * 182.44022 * 7 6 2 28 28 H 1.09000 * 109.52527 * 62.25012 * 7 6 2 29 29 H 1.08994 * 109.50290 * 297.71311 * 8 7 6 30 30 H 1.09005 * 109.50118 * 177.59738 * 8 7 6 31 31 H 1.09001 * 109.46277 * 180.80526 * 9 8 7 32 32 H 1.08998 * 109.45644 * 60.82303 * 9 8 7 33 33 H 1.09008 * 109.46960 * 290.79305 * 11 10 9 34 34 H 1.08996 * 109.47835 * 170.79302 * 11 10 9 35 35 H 1.09008 * 109.46689 * 60.00350 * 12 11 10 36 36 H 1.08998 * 109.47593 * 300.00860 * 12 11 10 37 37 H 0.97000 * 119.99736 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0320 1.4209 0.0000 4 8 2.5297 1.8858 -0.9980 5 8 1.9261 2.1702 1.1086 6 6 2.0400 -0.7210 -1.2498 7 6 1.5443 -2.1696 -1.2353 8 6 2.0269 -2.8531 0.0471 9 6 1.5173 -2.0704 1.2593 10 7 2.0192 -0.6917 1.1995 11 6 1.6650 0.0508 2.4166 12 6 2.0797 -0.7588 3.6468 13 6 1.7159 0.0026 4.8954 14 1 1.2364 0.9672 4.8191 15 6 1.9951 -0.5324 6.1350 16 7 2.5786 -1.7074 6.2280 17 14 1.5434 0.4110 7.6827 18 1 1.9472 -0.3742 8.8767 19 1 0.0765 0.6396 7.7127 20 1 2.2484 1.7182 7.6890 21 1 -0.3634 0.5144 0.8897 22 1 -0.3632 0.5134 -0.8903 23 1 -0.3633 -1.0276 0.0005 24 1 2.2617 3.0758 1.0602 25 1 3.1299 -0.7093 -1.2574 26 1 1.6644 -0.2168 -2.1402 27 1 1.9410 -2.6990 -2.1017 28 1 0.4548 -2.1822 -1.2670 29 1 3.1166 -2.8750 0.0598 30 1 1.6415 -3.8721 0.0835 31 1 1.8711 -2.5463 2.1739 32 1 0.4274 -2.0606 1.2531 33 1 0.5883 0.2196 2.4388 34 1 2.1832 1.0097 2.4211 35 1 3.1564 -0.9276 3.6245 36 1 1.5615 -1.7177 3.6424 37 1 2.8128 -2.1975 5.4243 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127605734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:07 Heat of formation + Delta-G solvation = -117.040132 kcal Electronic energy + Delta-G solvation = -18608.535535 eV Core-core repulsion = 15770.520374 eV Total energy + Delta-G solvation = -2838.015161 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.15037 -39.89945 -37.46597 -36.14259 -34.40512 -33.34040 -30.66404 -28.58458 -26.43000 -25.61413 -24.95594 -22.31703 -22.17965 -19.64413 -19.36421 -18.75144 -17.90386 -17.09837 -16.41371 -16.18528 -15.65673 -15.45587 -15.09468 -14.92932 -14.44142 -14.29420 -14.03672 -13.56598 -13.51599 -13.30231 -12.95487 -12.78838 -12.58756 -12.26979 -12.02278 -11.99529 -11.87580 -11.60531 -11.40352 -11.29825 -11.03254 -10.69747 -10.48344 -9.29199 -8.66857 -6.36467 1.02474 1.53362 1.61921 1.81136 2.03369 2.57043 2.91571 3.18296 3.50856 3.74316 3.94354 4.03306 4.12888 4.26642 4.37746 4.45177 4.49678 4.52885 4.63892 4.79314 4.84367 4.94484 5.01111 5.03304 5.05293 5.16043 5.24965 5.36383 5.45802 5.46728 5.58364 5.90138 6.08755 6.16748 6.21573 6.61095 6.91137 7.45177 8.74248 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029055 B = 0.007031 C = 0.006043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.452601 B = 3981.219867 C = 4632.013695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.114 3.886 3 C 0.497 3.503 4 O -0.539 6.539 5 O -0.500 6.500 6 C -0.091 4.091 7 C -0.112 4.112 8 C -0.114 4.114 9 C 0.047 3.953 10 N -0.535 5.535 11 C 0.068 3.932 12 C 0.018 3.982 13 C -0.616 4.616 14 H 0.051 0.949 15 C -0.038 4.038 16 N -0.938 5.938 17 Si 1.117 2.883 18 H -0.284 1.284 19 H -0.268 1.268 20 H -0.269 1.269 21 H 0.057 0.943 22 H 0.084 0.916 23 H 0.090 0.910 24 H 0.415 0.585 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.025 0.975 34 H 0.097 0.903 35 H -0.016 1.016 36 H -0.003 1.003 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.844 2.069 -14.759 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.023 3.977 3 C 0.340 3.660 4 O -0.428 6.428 5 O -0.313 6.313 6 C -0.129 4.129 7 C -0.149 4.149 8 C -0.152 4.152 9 C -0.080 4.080 10 N -0.261 5.261 11 C -0.059 4.059 12 C -0.019 4.019 13 C -0.654 4.654 14 H 0.069 0.931 15 C -0.235 4.235 16 N -0.575 5.575 17 Si 0.938 3.062 18 H -0.210 1.210 19 H -0.193 1.193 20 H -0.195 1.195 21 H 0.076 0.924 22 H 0.103 0.897 23 H 0.109 0.891 24 H 0.277 0.723 25 H 0.079 0.921 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.043 0.957 34 H 0.114 0.886 35 H 0.002 0.998 36 H 0.015 0.985 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.296 1.736 -13.408 14.186 hybrid contribution -0.343 0.650 -1.326 1.516 sum -4.638 2.386 -14.735 15.631 Atomic orbital electron populations 1.22470 0.92912 1.04781 1.03457 1.21135 0.95595 0.86666 0.94338 1.23550 0.73705 0.88903 0.79793 1.90650 1.42501 1.74304 1.35341 1.84915 1.77147 1.30807 1.38467 1.21503 1.01198 0.96318 0.93888 1.21635 1.01651 0.93586 0.98042 1.21638 1.01317 0.99017 0.93230 1.22256 0.97855 0.88014 0.99835 1.62300 1.59567 1.02983 1.01249 1.22418 0.98077 0.97931 0.87441 1.19207 0.94205 0.95070 0.93446 1.22427 1.43006 1.06572 0.93410 0.93073 1.27405 0.93703 0.96917 1.05521 1.70913 1.40412 1.14055 1.32142 0.82940 0.77190 0.74484 0.71565 1.20976 1.19337 1.19460 0.92374 0.89726 0.89089 0.72257 0.92051 0.89550 0.89016 0.90371 0.92060 0.89448 0.92170 0.93897 0.95660 0.88582 0.99811 0.98525 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.42 7.45 71.98 0.54 -3.88 16 2 C 0.11 3.32 0.66 2.80 0.00 3.32 16 3 C 0.50 15.50 7.10 71.24 0.51 16.01 16 4 O -0.54 -18.14 16.76 21.96 0.37 -17.77 16 5 O -0.50 -14.56 9.54 -51.37 -0.49 -15.05 16 6 C -0.09 -2.24 4.25 30.64 0.13 -2.11 16 7 C -0.11 -2.21 5.70 30.67 0.17 -2.03 16 8 C -0.11 -2.79 6.09 30.65 0.19 -2.60 16 9 C 0.05 1.54 4.71 86.32 0.41 1.95 16 10 N -0.53 -19.02 4.55 -851.07 -3.87 -22.89 16 11 C 0.07 2.87 3.97 86.30 0.34 3.21 16 12 C 0.02 0.95 3.74 29.85 0.11 1.06 16 13 C -0.62 -35.49 9.11 25.60 0.23 -35.26 16 14 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 15 C -0.04 -2.23 5.46 84.65 0.46 -1.77 16 16 N -0.94 -58.76 13.65 21.45 0.29 -58.47 16 17 Si 1.12 50.45 29.90 68.60 2.05 52.50 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 19 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 H 0.06 1.63 6.44 -2.38 -0.02 1.61 16 22 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 23 H 0.09 2.05 4.80 -2.39 -0.01 2.04 16 24 H 0.42 8.11 9.10 -65.39 -0.60 7.51 16 25 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.09 1.91 7.99 -2.39 -0.02 1.89 16 27 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.08 1.35 6.56 -2.39 -0.02 1.33 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 1.77 8.14 -2.38 -0.02 1.76 16 31 H 0.06 2.34 5.83 -2.39 -0.01 2.33 16 32 H 0.04 1.32 6.19 -2.39 -0.01 1.30 16 33 H 0.03 1.07 6.25 -2.38 -0.01 1.05 16 34 H 0.10 4.15 5.03 0.73 0.00 4.15 16 35 H -0.02 -0.96 8.01 -2.38 -0.02 -0.98 16 36 H 0.00 -0.18 6.05 -2.39 -0.01 -0.20 16 37 H 0.25 16.20 7.22 -92.71 -0.67 15.53 16 Total: -1.00 -70.43 281.89 2.05 -68.39 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.60 Total: 15.39 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: 3.09 Total: -22.10 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -3.58 Total: -81.36 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.12 Total: -32.82 kcal Atomic # 14 Polarization: 50.45 SS G_CDS: 2.05 Total: 52.50 kcal Total: -70.43 2.05 -68.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127605734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.652 kcal (2) G-P(sol) polarization free energy of solvation -70.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds