Wall clock time and date at job start Mon Mar 30 2020 03:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86802 * 119.99457 * 2 1 4 4 H 1.48502 * 109.47179 * 240.00010 * 3 2 1 5 5 H 1.48494 * 109.47379 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46805 * 120.00432 * 3 2 1 7 7 C 1.40048 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99758 * 179.97438 * 7 2 1 9 9 C 1.46371 * 119.99796 * 359.97438 * 7 2 1 10 10 O 1.21690 * 120.00429 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00114 * 180.02562 * 9 7 2 12 12 C 1.46501 * 120.00251 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.47214 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47540 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.47540 * 179.97438 * 14 13 12 16 16 C 1.53175 * 109.53913 * 65.44548 * 15 14 13 17 17 C 1.53092 * 109.16179 * 176.85000 * 16 15 14 18 18 O 1.42910 * 109.41107 * 302.39040 * 17 16 15 19 19 C 1.42900 * 114.09727 * 61.16189 * 18 17 16 20 20 C 1.53090 * 109.41229 * 298.83586 * 19 18 17 21 21 H 0.97003 * 120.00598 * 359.97438 * 1 2 3 22 22 H 0.97007 * 119.99704 * 359.97438 * 11 9 7 23 23 H 1.08995 * 109.46949 * 60.00309 * 12 11 9 24 24 H 1.08997 * 109.47218 * 299.99792 * 12 11 9 25 25 H 1.09009 * 109.47020 * 59.99885 * 13 12 11 26 26 H 1.09005 * 109.47341 * 300.00148 * 13 12 11 27 27 H 1.09005 * 109.46474 * 59.99952 * 14 13 12 28 28 H 1.09005 * 109.47030 * 300.00468 * 14 13 12 29 29 H 1.08997 * 109.61228 * 305.22843 * 15 14 13 30 30 H 1.09006 * 109.52647 * 296.75300 * 16 15 14 31 31 H 1.08998 * 109.52537 * 56.94192 * 16 15 14 32 32 H 1.08998 * 109.48147 * 182.40843 * 17 16 15 33 33 H 1.08997 * 109.48550 * 62.37144 * 17 16 15 34 34 H 1.09003 * 109.47953 * 178.86010 * 19 18 17 35 35 H 1.08995 * 109.49265 * 58.82602 * 19 18 17 36 36 H 1.09001 * 109.52724 * 297.70937 * 20 19 18 37 37 H 1.09000 * 109.52338 * 177.51272 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0944 1.6966 -1.2125 5 1 1.2756 2.7465 0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0071 -1.2128 -0.0005 8 1 3.0871 -1.2127 -0.0010 9 6 1.2753 -2.4804 -0.0005 10 8 0.0584 -2.4806 -0.0005 11 7 1.9491 -3.6476 -0.0005 12 6 1.2167 -4.9164 -0.0011 13 6 2.2110 -6.0793 -0.0016 14 6 1.4462 -7.4044 -0.0016 15 6 2.4404 -8.5672 -0.0027 16 6 3.2303 -8.5673 1.3097 17 6 4.1659 -9.7788 1.3331 18 8 3.3984 -10.9746 1.1809 19 6 2.6759 -11.0515 -0.0496 20 6 1.6804 -9.8912 -0.1285 21 1 -0.4851 0.8400 0.0004 22 1 2.9192 -3.6475 -0.0009 23 1 0.5905 -4.9740 -0.8913 24 1 0.5898 -4.9744 0.8886 25 1 2.8377 -6.0219 0.8884 26 1 2.8377 -6.0211 -0.8916 27 1 0.8192 -7.4619 -0.8914 28 1 0.8197 -7.4623 0.8886 29 1 3.1277 -8.4601 -0.8419 30 1 3.8178 -7.6519 1.3814 31 1 2.5393 -8.6244 2.1507 32 1 4.6995 -9.8077 2.2831 33 1 4.8827 -9.7004 0.5157 34 1 2.1360 -11.9973 -0.0956 35 1 3.3730 -10.9898 -0.8852 36 1 0.9581 -9.9750 0.6835 37 1 1.1595 -9.9225 -1.0854 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170182141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:37 Heat of formation + Delta-G solvation = -118.356620 kcal Electronic energy + Delta-G solvation = -16982.705728 eV Core-core repulsion = 14144.633479 eV Total energy + Delta-G solvation = -2838.072248 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.64140 -37.39989 -35.87760 -33.54936 -32.34227 -31.32497 -30.58927 -27.14410 -25.63944 -23.81080 -22.91695 -20.97487 -20.18904 -19.53541 -17.09275 -16.33061 -16.20325 -15.47509 -15.28126 -14.87845 -14.52113 -14.24635 -14.03855 -13.79825 -12.90475 -12.78744 -12.38100 -12.20467 -11.88068 -11.58930 -11.51442 -11.20261 -11.12672 -10.95748 -10.73081 -10.61234 -10.44557 -10.35867 -10.24527 -10.20401 -9.63910 -8.82491 -7.58558 -7.45335 -6.15951 -4.61751 3.16968 3.21549 3.23649 3.68127 4.12024 4.45377 4.55803 4.61899 4.69335 4.82349 4.93846 5.04376 5.19937 5.22587 5.32904 5.40554 5.46066 5.57729 5.59830 5.73874 5.80451 5.85742 5.89713 5.94730 6.03834 6.08343 6.22300 6.33033 6.66382 6.66750 6.98812 7.45195 7.96733 8.14765 8.35771 9.04552 9.58034 10.63185 10.82021 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.061315 B = 0.003525 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.546048 B = 7941.739369 C = 8253.947274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.553 3.447 10 O -0.582 6.582 11 N -0.770 5.770 12 C 0.133 3.867 13 C -0.128 4.128 14 C -0.110 4.110 15 C -0.089 4.089 16 C -0.153 4.153 17 C 0.060 3.940 18 O -0.387 6.387 19 C 0.060 3.940 20 C -0.152 4.152 21 H 0.268 0.732 22 H 0.379 0.621 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.721 -17.805 0.072 19.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.357 3.643 10 O -0.465 6.465 11 N -0.425 5.425 12 C 0.007 3.993 13 C -0.166 4.166 14 C -0.148 4.148 15 C -0.107 4.107 16 C -0.191 4.191 17 C -0.017 4.017 18 O -0.305 6.305 19 C -0.016 4.016 20 C -0.190 4.190 21 H 0.079 0.921 22 H 0.210 0.790 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.609 -17.845 0.211 19.030 hybrid contribution 0.907 1.063 -0.241 1.418 sum 7.516 -16.782 -0.030 18.388 Atomic orbital electron populations 1.70015 1.07065 1.27319 1.35405 1.25715 0.94618 1.00282 0.92641 0.86431 0.79800 0.81057 0.79409 1.19305 1.20572 1.19303 1.20865 0.93528 0.89508 1.54539 0.91520 1.18217 0.87213 0.82534 0.76322 1.90593 1.14134 1.86952 1.54870 1.46136 1.08483 1.05107 1.82770 1.20861 0.94103 0.83863 1.00437 1.21823 0.98721 0.94074 1.02000 1.21541 0.97613 0.93140 1.02487 1.21213 0.97331 0.94494 0.97695 1.22311 0.99527 0.98814 0.98443 1.22607 0.92875 0.84480 1.01723 1.87915 1.63660 1.39997 1.38972 1.22574 0.93742 0.98776 0.86533 1.22263 0.98860 0.94928 1.02940 0.92082 0.78995 0.93661 0.93622 0.91720 0.91961 0.91672 0.91676 0.91125 0.90359 0.90944 0.89021 0.93332 0.89114 0.93359 0.90952 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.49 11.83 55.55 0.66 -22.84 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 3 Si 0.91 20.35 29.56 -169.99 -5.02 15.33 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.55 -15.77 9.54 -35.63 -0.34 -16.11 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.33 16 9 C 0.55 16.19 7.75 -12.99 -0.10 16.09 16 10 O -0.58 -19.42 15.02 5.20 0.08 -19.34 16 11 N -0.77 -17.63 5.55 -61.73 -0.34 -17.97 16 12 C 0.13 2.58 5.67 -4.04 -0.02 2.56 16 13 C -0.13 -1.77 5.09 -26.73 -0.14 -1.90 16 14 C -0.11 -1.28 4.69 -26.73 -0.13 -1.40 16 15 C -0.09 -0.87 2.27 -90.44 -0.21 -1.08 16 16 C -0.15 -1.48 5.10 -26.59 -0.14 -1.62 16 17 C 0.06 0.55 6.84 37.21 0.25 0.80 16 18 O -0.39 -4.18 10.77 -35.23 -0.38 -4.56 16 19 C 0.06 0.53 6.84 37.20 0.25 0.78 16 20 C -0.15 -1.36 5.42 -26.59 -0.14 -1.51 16 21 H 0.27 7.43 8.29 -40.82 -0.34 7.09 16 22 H 0.38 7.55 8.45 -40.82 -0.35 7.20 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 0.85 6.66 -51.92 -0.35 0.50 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.74 6.75 -51.93 -0.35 0.39 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 302.62 15.07 4.56 4.56 Total: -1.00 -34.93 302.62 -7.33 -42.26 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.08 Total: 3.58 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -0.80 Total: -1.01 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.31 Total: -40.81 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.30 Total: -23.90 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.93 -7.33 -42.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170182141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.100 kcal (2) G-P(sol) polarization free energy of solvation -34.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds