Wall clock time and date at job start Mon Mar 30 2020 03:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86802 * 119.99457 * 2 1 4 4 H 1.48502 * 109.47179 * 240.00010 * 3 2 1 5 5 H 1.48494 * 109.47379 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46805 * 120.00432 * 3 2 1 7 7 C 1.40048 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99758 * 179.97438 * 7 2 1 9 9 C 1.46371 * 119.99796 * 359.97438 * 7 2 1 10 10 O 1.21690 * 120.00429 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00114 * 180.02562 * 9 7 2 12 12 C 1.46501 * 120.00251 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.47214 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47540 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.47540 * 179.97438 * 14 13 12 16 16 C 1.53175 * 109.53913 * 65.44548 * 15 14 13 17 17 C 1.53092 * 109.16179 * 176.85000 * 16 15 14 18 18 O 1.42910 * 109.41107 * 302.39040 * 17 16 15 19 19 C 1.42900 * 114.09727 * 61.16189 * 18 17 16 20 20 C 1.53090 * 109.41229 * 298.83586 * 19 18 17 21 21 H 0.97003 * 120.00598 * 359.97438 * 1 2 3 22 22 H 0.97007 * 119.99704 * 359.97438 * 11 9 7 23 23 H 1.08995 * 109.46949 * 60.00309 * 12 11 9 24 24 H 1.08997 * 109.47218 * 299.99792 * 12 11 9 25 25 H 1.09009 * 109.47020 * 59.99885 * 13 12 11 26 26 H 1.09005 * 109.47341 * 300.00148 * 13 12 11 27 27 H 1.09005 * 109.46474 * 59.99952 * 14 13 12 28 28 H 1.09005 * 109.47030 * 300.00468 * 14 13 12 29 29 H 1.08997 * 109.61228 * 305.22843 * 15 14 13 30 30 H 1.09006 * 109.52647 * 296.75300 * 16 15 14 31 31 H 1.08998 * 109.52537 * 56.94192 * 16 15 14 32 32 H 1.08998 * 109.48147 * 182.40843 * 17 16 15 33 33 H 1.08997 * 109.48550 * 62.37144 * 17 16 15 34 34 H 1.09003 * 109.47953 * 178.86010 * 19 18 17 35 35 H 1.08995 * 109.49265 * 58.82602 * 19 18 17 36 36 H 1.09001 * 109.52724 * 297.70937 * 20 19 18 37 37 H 1.09000 * 109.52338 * 177.51272 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0944 1.6966 -1.2125 5 1 1.2756 2.7465 0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0071 -1.2128 -0.0005 8 1 3.0871 -1.2127 -0.0010 9 6 1.2753 -2.4804 -0.0005 10 8 0.0584 -2.4806 -0.0005 11 7 1.9491 -3.6476 -0.0005 12 6 1.2167 -4.9164 -0.0011 13 6 2.2110 -6.0793 -0.0016 14 6 1.4462 -7.4044 -0.0016 15 6 2.4404 -8.5672 -0.0027 16 6 3.2303 -8.5673 1.3097 17 6 4.1659 -9.7788 1.3331 18 8 3.3984 -10.9746 1.1809 19 6 2.6759 -11.0515 -0.0496 20 6 1.6804 -9.8912 -0.1285 21 1 -0.4851 0.8400 0.0004 22 1 2.9192 -3.6475 -0.0009 23 1 0.5905 -4.9740 -0.8913 24 1 0.5898 -4.9744 0.8886 25 1 2.8377 -6.0219 0.8884 26 1 2.8377 -6.0211 -0.8916 27 1 0.8192 -7.4619 -0.8914 28 1 0.8197 -7.4623 0.8886 29 1 3.1277 -8.4601 -0.8419 30 1 3.8178 -7.6519 1.3814 31 1 2.5393 -8.6244 2.1507 32 1 4.6995 -9.8077 2.2831 33 1 4.8827 -9.7004 0.5157 34 1 2.1360 -11.9973 -0.0956 35 1 3.3730 -10.9898 -0.8852 36 1 0.9581 -9.9750 0.6835 37 1 1.1595 -9.9225 -1.0854 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170182141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:37 Heat of formation + Delta-G solvation = -143.618149 kcal Electronic energy + Delta-G solvation = -16983.801150 eV Core-core repulsion = 14144.633479 eV Total energy + Delta-G solvation = -2839.167670 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.41101 -39.42395 -37.07216 -35.19080 -34.46745 -32.19948 -31.84843 -28.88326 -27.18323 -24.61169 -24.04816 -22.14148 -21.72274 -20.86167 -19.14544 -17.43569 -17.11273 -16.94146 -16.57166 -16.16568 -15.91603 -15.64432 -15.33735 -14.82322 -14.44770 -14.30485 -13.67956 -13.38967 -13.20114 -12.94364 -12.76287 -12.68381 -12.62203 -12.33977 -12.20240 -12.05641 -11.82775 -11.65234 -11.18728 -11.11421 -10.92364 -10.41050 -9.88468 -9.49141 -8.29736 -6.87107 1.40205 1.44097 1.56040 2.24992 2.46263 3.01308 3.11701 3.60667 3.74899 3.77755 3.90096 4.11888 4.17015 4.25175 4.32986 4.47073 4.52128 4.62324 4.74182 4.75134 4.81886 4.85390 4.97582 5.00860 5.04026 5.16706 5.22456 5.27838 5.30782 5.38974 5.51659 5.86906 6.24148 6.27388 6.30690 6.85421 7.55510 8.48347 8.66604 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.061315 B = 0.003525 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.546048 B = 7941.739369 C = 8253.947274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.026 3.974 3 Si 1.002 2.998 4 H -0.253 1.253 5 H -0.275 1.275 6 H -0.253 1.253 7 C -0.576 4.576 8 H 0.090 0.910 9 C 0.533 3.467 10 O -0.636 6.636 11 N -0.757 5.757 12 C 0.132 3.868 13 C -0.111 4.111 14 C -0.105 4.105 15 C -0.084 4.084 16 C -0.153 4.153 17 C 0.058 3.942 18 O -0.408 6.408 19 C 0.058 3.942 20 C -0.150 4.150 21 H 0.275 0.725 22 H 0.396 0.604 23 H 0.027 0.973 24 H 0.026 0.974 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.042 -17.863 -0.248 20.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.189 4.189 3 Si 0.821 3.179 4 H -0.177 1.177 5 H -0.199 1.199 6 H -0.177 1.177 7 C -0.612 4.612 8 H 0.108 0.892 9 C 0.337 3.663 10 O -0.524 6.524 11 N -0.411 5.411 12 C 0.008 3.992 13 C -0.149 4.149 14 C -0.143 4.143 15 C -0.103 4.103 16 C -0.190 4.190 17 C -0.018 4.018 18 O -0.327 6.327 19 C -0.019 4.019 20 C -0.188 4.188 21 H 0.085 0.915 22 H 0.230 0.770 23 H 0.046 0.954 24 H 0.044 0.956 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.984 -17.959 -0.109 20.081 hybrid contribution 0.156 1.006 -0.141 1.028 sum 9.140 -16.952 -0.249 19.261 Atomic orbital electron populations 1.70194 1.09656 1.29063 1.36437 1.27047 0.95560 1.05163 0.91141 0.85019 0.78135 0.74430 0.80360 1.17693 1.19950 1.17727 1.21442 0.94829 0.90098 1.54837 0.89228 1.18687 0.86872 0.84610 0.76114 1.90545 1.16374 1.88115 1.57376 1.45832 1.09364 1.04878 1.81051 1.21005 0.95168 0.84433 0.98639 1.21703 0.97504 0.92421 1.03229 1.21495 0.97867 0.92773 1.02204 1.21166 0.96968 0.93947 0.98180 1.22301 0.99483 0.99408 0.97857 1.22696 0.92752 0.83646 1.02729 1.87891 1.64073 1.40698 1.40035 1.22705 0.93825 0.99127 0.86218 1.22243 0.98780 0.94606 1.03170 0.91540 0.77011 0.95437 0.95584 0.90521 0.90564 0.91691 0.92395 0.90213 0.89969 0.92055 0.88170 0.92215 0.87931 0.92255 0.91886 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.44 11.83 21.84 0.26 -51.18 16 2 C 0.03 1.46 5.50 85.30 0.47 1.93 16 3 Si 1.00 41.15 29.56 68.60 2.03 43.18 16 4 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 6 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 7 C -0.58 -33.17 9.54 24.83 0.24 -32.93 16 8 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 9 C 0.53 31.88 7.75 86.36 0.67 32.55 16 10 O -0.64 -44.15 15.02 -4.32 -0.06 -44.21 16 11 N -0.76 -34.80 5.55 -467.42 -2.59 -37.40 16 12 C 0.13 5.21 5.67 86.38 0.49 5.70 16 13 C -0.11 -2.90 5.09 30.59 0.16 -2.75 16 14 C -0.11 -2.34 4.69 30.59 0.14 -2.20 16 15 C -0.08 -1.49 2.27 -10.68 -0.02 -1.52 16 16 C -0.15 -2.69 5.10 30.68 0.16 -2.53 16 17 C 0.06 0.95 6.84 72.01 0.49 1.44 16 18 O -0.41 -8.13 10.77 -148.98 -1.60 -9.74 16 19 C 0.06 0.88 6.84 72.01 0.49 1.38 16 20 C -0.15 -2.44 5.42 30.68 0.17 -2.27 16 21 H 0.27 15.51 8.29 -92.71 -0.77 14.74 16 22 H 0.40 15.35 8.45 -92.70 -0.78 14.56 16 23 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.08 1.86 6.66 -2.38 -0.02 1.84 16 26 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 27 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.37 6.75 -2.38 -0.02 1.35 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -77.59 302.62 1.73 -75.86 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.26 Total: 24.69 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 3.45 Total: -1.20 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -2.34 Total: -88.58 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: -1.67 Total: -53.95 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -77.59 1.73 -75.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170182141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.757 kcal (2) G-P(sol) polarization free energy of solvation -77.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds