Wall clock time and date at job start Mon Mar 30 2020 03:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47342 * 180.02562 * 10 9 7 12 12 C 1.47022 * 111.00315 * 46.45001 * 11 10 9 13 13 C 1.53094 * 109.35863 * 182.83954 * 12 11 10 14 14 O 1.43145 * 109.20778 * 302.62786 * 13 12 11 15 15 C 1.42288 * 113.81691 * 57.53305 * 14 13 12 16 16 C 1.53991 * 110.34978 * 65.49841 * 15 14 13 17 17 C 1.54607 * 103.87882 * 118.54888 * 16 15 14 18 18 O 1.44473 * 104.81582 * 23.90813 * 17 16 15 19 19 C 1.44556 * 105.37176 * 319.82481 * 18 17 16 20 20 C 1.47122 * 111.00256 * 170.00000 * 11 10 9 21 21 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 23 23 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 24 24 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 25 25 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 26 26 H 1.08996 * 109.48955 * 302.81257 * 12 11 10 27 27 H 1.09007 * 109.48222 * 62.88012 * 12 11 10 28 28 H 1.08996 * 109.51278 * 182.70307 * 13 12 11 29 29 H 1.09009 * 109.55475 * 62.57218 * 13 12 11 30 30 H 1.08999 * 110.54791 * 237.15061 * 16 15 14 31 31 H 1.09001 * 110.54520 * 359.95690 * 16 15 14 32 32 H 1.08994 * 110.37090 * 142.74072 * 17 16 15 33 33 H 1.09006 * 110.36809 * 265.07253 * 17 16 15 34 34 H 1.08998 * 110.39412 * 281.19339 * 19 18 17 35 35 H 1.09003 * 110.39073 * 158.79520 * 19 18 17 36 36 H 1.09003 * 109.49511 * 298.68110 * 20 11 10 37 37 H 1.08996 * 109.49601 * 58.73525 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5109 -4.9342 0.0012 12 6 0.4295 -4.9179 -0.9948 13 6 -0.3539 -6.2308 -0.9148 14 8 0.5425 -7.3275 -1.1213 15 6 1.6240 -7.3675 -0.1975 16 6 1.1018 -7.6300 1.2272 17 6 1.7667 -8.9677 1.6253 18 8 2.9485 -9.0533 0.7987 19 6 2.5439 -8.5643 -0.5001 20 6 2.4189 -6.0672 -0.2361 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8896 24 1 2.8727 -3.6047 -0.8877 25 1 2.8713 -3.6038 0.8923 26 1 -0.2397 -4.0820 -0.7914 27 1 0.8556 -4.8089 -1.9922 28 1 -1.1259 -6.2415 -1.6841 29 1 -0.8177 -6.3196 0.0677 30 1 1.4131 -6.8324 1.9017 31 1 0.0162 -7.7283 1.2247 32 1 2.0416 -8.9557 2.6800 33 1 1.0964 -9.8016 1.4165 34 1 1.9975 -9.3355 -1.0430 35 1 3.4135 -8.2399 -1.0716 36 1 2.8898 -5.9575 -1.2130 37 1 3.1865 -6.0864 0.5375 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185174212.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:29 Heat of formation + Delta-G solvation = -89.195686 kcal Electronic energy + Delta-G solvation = -18184.197903 eV Core-core repulsion = 15347.390167 eV Total energy + Delta-G solvation = -2836.807735 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.61469 -38.06143 -35.97223 -33.32344 -32.09347 -30.12811 -29.76134 -27.68906 -25.27882 -23.67929 -22.81682 -22.67418 -20.33986 -19.24487 -17.17938 -16.75198 -16.35505 -16.06235 -15.14876 -15.00577 -14.70540 -14.24623 -13.91295 -13.74381 -13.63476 -13.22818 -12.61626 -12.23063 -12.07364 -11.72138 -11.50765 -11.41929 -11.09040 -11.02445 -10.87820 -10.39307 -10.23905 -10.11814 -9.94242 -9.75713 -9.38864 -8.63364 -8.36261 -7.95152 -6.40690 -4.09813 3.41950 3.43729 3.55279 3.62522 3.84884 4.16852 4.52340 4.55237 4.69930 4.82493 5.06603 5.10722 5.23204 5.35298 5.37345 5.44750 5.51357 5.58023 5.58892 5.62955 5.71465 5.91655 6.00037 6.08334 6.11816 6.22726 6.25356 6.52505 6.68913 7.14221 7.21348 7.29625 7.47510 7.57307 8.17626 8.41044 8.83670 9.62173 11.00218 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.046004 B = 0.005063 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.496096 B = 5529.307326 C = 5786.224335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.017 3.983 3 Si 1.069 2.931 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.604 4.604 8 H 0.048 0.952 9 C 0.009 3.991 10 C 0.069 3.931 11 N -0.536 5.536 12 C 0.014 3.986 13 C 0.063 3.937 14 O -0.374 6.374 15 C 0.091 3.909 16 C -0.170 4.170 17 C 0.045 3.955 18 O -0.371 6.371 19 C 0.061 3.939 20 C 0.037 3.963 21 H 0.268 0.732 22 H 0.016 0.984 23 H 0.011 0.989 24 H 0.023 0.977 25 H 0.066 0.934 26 H 0.099 0.901 27 H 0.038 0.962 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.038 0.962 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 -16.304 -0.017 16.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.187 4.187 3 Si 0.897 3.103 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.207 1.207 7 C -0.643 4.643 8 H 0.066 0.934 9 C -0.028 4.028 10 C -0.057 4.057 11 N -0.261 5.261 12 C -0.114 4.114 13 C -0.013 4.013 14 O -0.293 6.293 15 C 0.050 3.950 16 C -0.208 4.208 17 C -0.031 4.031 18 O -0.290 6.290 19 C -0.017 4.017 20 C -0.092 4.092 21 H 0.078 0.922 22 H 0.034 0.966 23 H 0.029 0.971 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.117 0.883 27 H 0.056 0.944 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.056 0.944 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.307 -14.921 0.370 14.983 hybrid contribution 0.381 -1.201 -0.689 1.436 sum 1.688 -16.122 -0.319 16.214 Atomic orbital electron populations 1.70792 1.06869 1.30548 1.46508 1.25842 0.96520 1.02699 0.93658 0.83538 0.74895 0.75294 0.76533 1.21483 1.21385 1.20711 1.21986 0.94288 0.91933 1.56054 0.93369 1.19350 0.94728 0.92281 0.96437 1.22216 0.96743 0.87305 0.99470 1.62404 1.11929 1.03766 1.47996 1.22832 0.95579 0.98720 0.94242 1.22791 0.91615 0.85070 1.01852 1.87825 1.37925 1.48816 1.54775 1.22408 0.87826 0.95495 0.89255 1.23396 1.01725 0.98472 0.97170 1.23452 0.87078 0.96535 0.96049 1.89169 1.32488 1.85675 1.21668 1.23219 0.97991 0.94032 0.86420 1.22599 0.95328 0.90535 1.00729 0.92153 0.96593 0.97136 0.95844 0.91520 0.88281 0.94390 0.88507 0.92175 0.88872 0.89884 0.88942 0.92263 0.90938 0.88259 0.94370 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.77 13.65 55.43 0.76 -27.01 16 2 C 0.02 0.48 5.46 -17.82 -0.10 0.39 16 3 Si 1.07 25.24 29.90 -169.99 -5.08 20.16 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.60 -17.20 9.11 -34.44 -0.31 -17.51 16 8 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 9 C 0.01 0.23 3.56 -27.88 -0.10 0.13 16 10 C 0.07 1.47 5.22 -3.82 -0.02 1.45 16 11 N -0.54 -9.66 4.64 -234.62 -1.09 -10.75 16 12 C 0.01 0.25 4.94 -3.71 -0.02 0.23 16 13 C 0.06 0.89 6.71 37.21 0.25 1.14 16 14 O -0.37 -5.45 10.23 -35.23 -0.36 -5.81 16 15 C 0.09 1.24 1.04 -89.89 -0.09 1.14 16 16 C -0.17 -2.11 5.78 -25.37 -0.15 -2.26 16 17 C 0.05 0.50 7.65 38.00 0.29 0.79 16 18 O -0.37 -4.80 11.65 -35.23 -0.41 -5.21 16 19 C 0.06 0.74 6.92 37.65 0.26 1.00 16 20 C 0.04 0.57 3.97 -3.98 -0.02 0.55 16 21 H 0.27 8.11 7.22 -40.82 -0.29 7.82 16 22 H 0.02 0.43 8.01 -51.93 -0.42 0.01 16 23 H 0.01 0.28 6.13 -51.93 -0.32 -0.04 16 24 H 0.02 0.50 8.08 -51.93 -0.42 0.08 16 25 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.10 1.84 6.02 -51.93 -0.31 1.53 16 27 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.06 0.82 6.80 -51.92 -0.35 0.46 16 30 H 0.09 1.27 7.65 -51.93 -0.40 0.87 16 31 H 0.08 1.00 6.85 -51.93 -0.36 0.64 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.10 1.10 7.84 -51.93 -0.41 0.69 16 36 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 289.15 15.07 4.36 4.36 Total: -1.00 -30.90 289.15 -7.69 -38.59 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.85 Total: -1.37 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 0.00 Total: -12.96 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: -0.33 Total: -37.75 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -0.77 Total: -11.02 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.08 Total: 20.16 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.90 -7.69 -38.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185174212.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.609 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds