Wall clock time and date at job start Mon Mar 30 2020 03:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47342 * 180.02562 * 10 9 7 12 12 C 1.47022 * 111.00315 * 46.45001 * 11 10 9 13 13 C 1.53094 * 109.35863 * 182.83954 * 12 11 10 14 14 O 1.43145 * 109.20778 * 302.62786 * 13 12 11 15 15 C 1.42288 * 113.81691 * 57.53305 * 14 13 12 16 16 C 1.53991 * 110.34978 * 65.49841 * 15 14 13 17 17 C 1.54607 * 103.87882 * 118.54888 * 16 15 14 18 18 O 1.44473 * 104.81582 * 23.90813 * 17 16 15 19 19 C 1.44556 * 105.37176 * 319.82481 * 18 17 16 20 20 C 1.47122 * 111.00256 * 170.00000 * 11 10 9 21 21 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 23 23 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 24 24 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 25 25 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 26 26 H 1.08996 * 109.48955 * 302.81257 * 12 11 10 27 27 H 1.09007 * 109.48222 * 62.88012 * 12 11 10 28 28 H 1.08996 * 109.51278 * 182.70307 * 13 12 11 29 29 H 1.09009 * 109.55475 * 62.57218 * 13 12 11 30 30 H 1.08999 * 110.54791 * 237.15061 * 16 15 14 31 31 H 1.09001 * 110.54520 * 359.95690 * 16 15 14 32 32 H 1.08994 * 110.37090 * 142.74072 * 17 16 15 33 33 H 1.09006 * 110.36809 * 265.07253 * 17 16 15 34 34 H 1.08998 * 110.39412 * 281.19339 * 19 18 17 35 35 H 1.09003 * 110.39073 * 158.79520 * 19 18 17 36 36 H 1.09003 * 109.49511 * 298.68110 * 20 11 10 37 37 H 1.08996 * 109.49601 * 58.73525 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5109 -4.9342 0.0012 12 6 0.4295 -4.9179 -0.9948 13 6 -0.3539 -6.2308 -0.9148 14 8 0.5425 -7.3275 -1.1213 15 6 1.6240 -7.3675 -0.1975 16 6 1.1018 -7.6300 1.2272 17 6 1.7667 -8.9677 1.6253 18 8 2.9485 -9.0533 0.7987 19 6 2.5439 -8.5643 -0.5001 20 6 2.4189 -6.0672 -0.2361 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8896 24 1 2.8727 -3.6047 -0.8877 25 1 2.8713 -3.6038 0.8923 26 1 -0.2397 -4.0820 -0.7914 27 1 0.8556 -4.8089 -1.9922 28 1 -1.1259 -6.2415 -1.6841 29 1 -0.8177 -6.3196 0.0677 30 1 1.4131 -6.8324 1.9017 31 1 0.0162 -7.7283 1.2247 32 1 2.0416 -8.9557 2.6800 33 1 1.0964 -9.8016 1.4165 34 1 1.9975 -9.3355 -1.0430 35 1 3.4135 -8.2399 -1.0716 36 1 2.8898 -5.9575 -1.2130 37 1 3.1865 -6.0864 0.5375 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185174212.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:28 Heat of formation + Delta-G solvation = -111.514027 kcal Electronic energy + Delta-G solvation = -18185.165698 eV Core-core repulsion = 15347.390167 eV Total energy + Delta-G solvation = -2837.775531 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.73875 -39.21436 -37.42933 -35.36402 -33.24903 -31.62219 -31.07589 -28.99483 -26.87834 -25.26054 -24.32075 -23.75198 -21.95601 -20.46245 -19.04356 -18.06357 -17.53579 -17.18745 -16.44517 -16.22790 -15.92147 -15.72192 -15.58709 -15.14432 -15.02023 -14.69482 -14.07471 -13.84781 -13.49716 -13.21003 -12.83945 -12.74902 -12.55521 -12.37728 -12.09860 -12.04339 -11.95607 -11.72566 -11.38841 -10.84375 -10.76825 -10.65485 -10.56094 -9.45394 -8.72577 -6.43227 1.51648 1.59733 1.79395 2.45801 2.53716 2.73275 2.99859 3.12956 3.47365 3.61753 3.81353 3.90739 4.00820 4.13790 4.19413 4.24839 4.31234 4.41846 4.45550 4.54123 4.60379 4.64681 4.72771 4.77986 4.78992 4.86034 4.94336 5.08023 5.17176 5.34557 5.59200 5.74851 5.94809 6.03803 6.12747 6.13950 6.53934 7.38324 8.68716 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.046004 B = 0.005063 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.496096 B = 5529.307326 C = 5786.224335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.035 4.035 3 Si 1.118 2.882 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.282 1.282 7 C -0.624 4.624 8 H 0.049 0.951 9 C 0.017 3.983 10 C 0.084 3.916 11 N -0.538 5.538 12 C 0.015 3.985 13 C 0.071 3.929 14 O -0.377 6.377 15 C 0.087 3.913 16 C -0.168 4.168 17 C 0.047 3.953 18 O -0.385 6.385 19 C 0.064 3.936 20 C 0.038 3.962 21 H 0.256 0.744 22 H -0.007 1.007 23 H -0.001 1.001 24 H 0.019 0.981 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.028 0.972 28 H 0.121 0.879 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.036 0.964 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.210 -17.348 -0.005 17.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.232 4.232 3 Si 0.939 3.061 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.207 1.207 7 C -0.662 4.662 8 H 0.068 0.932 9 C -0.020 4.020 10 C -0.043 4.043 11 N -0.263 5.263 12 C -0.114 4.114 13 C -0.006 4.006 14 O -0.296 6.296 15 C 0.047 3.953 16 C -0.206 4.206 17 C -0.029 4.029 18 O -0.305 6.305 19 C -0.013 4.013 20 C -0.091 4.091 21 H 0.065 0.935 22 H 0.011 0.989 23 H 0.017 0.983 24 H 0.037 0.963 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.047 0.953 28 H 0.139 0.861 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.126 0.874 36 H 0.054 0.946 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.998 -16.007 0.383 16.136 hybrid contribution 0.150 -0.919 -0.690 1.159 sum 2.148 -16.927 -0.307 17.065 Atomic orbital electron populations 1.70921 1.07898 1.29872 1.48438 1.27416 0.96579 1.06733 0.92512 0.82927 0.74142 0.71043 0.78014 1.19492 1.19385 1.20736 1.22427 0.94680 0.93403 1.55664 0.93243 1.19197 0.94905 0.93266 0.94672 1.21889 0.95600 0.87715 0.99141 1.62352 1.12304 1.03051 1.48615 1.22831 0.95169 1.00052 0.93326 1.22802 0.91419 0.83112 1.03228 1.87831 1.38069 1.48484 1.55171 1.22510 0.87794 0.94974 0.90031 1.23354 1.02182 0.99062 0.95982 1.23575 0.86685 0.95996 0.96627 1.89160 1.33507 1.85680 1.22112 1.23253 0.98072 0.93493 0.86457 1.22679 0.95305 0.90417 1.00664 0.93497 0.98874 0.98302 0.96309 0.91642 0.90490 0.95344 0.86079 0.91510 0.90354 0.89317 0.87487 0.90509 0.89697 0.87439 0.94588 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.93 13.65 21.45 0.29 -57.64 16 2 C -0.03 -2.01 5.46 84.66 0.46 -1.55 16 3 Si 1.12 50.22 29.90 68.60 2.05 52.27 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 7 C -0.62 -35.94 9.11 25.60 0.23 -35.70 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 9 C 0.02 0.88 3.56 29.85 0.11 0.99 16 10 C 0.08 3.62 5.22 86.31 0.45 4.07 16 11 N -0.54 -19.43 4.64 -896.19 -4.15 -23.59 16 12 C 0.01 0.50 4.94 86.31 0.43 0.93 16 13 C 0.07 1.89 6.71 72.01 0.48 2.37 16 14 O -0.38 -10.18 10.23 -148.98 -1.52 -11.71 16 15 C 0.09 2.23 1.04 -10.32 -0.01 2.22 16 16 C -0.17 -3.87 5.78 31.48 0.18 -3.69 16 17 C 0.05 0.91 7.65 72.53 0.55 1.46 16 18 O -0.39 -9.05 11.65 -148.98 -1.74 -10.78 16 19 C 0.06 1.41 6.92 72.30 0.50 1.91 16 20 C 0.04 1.13 3.97 86.08 0.34 1.47 16 21 H 0.26 16.01 7.22 -92.70 -0.67 15.34 16 22 H -0.01 -0.40 8.01 -2.39 -0.02 -0.42 16 23 H 0.00 -0.06 6.13 -2.39 -0.01 -0.08 16 24 H 0.02 0.82 8.08 -2.39 -0.02 0.80 16 25 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 26 H 0.08 2.97 6.02 -2.39 -0.01 2.96 16 27 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.07 1.71 6.80 -2.38 -0.02 1.70 16 30 H 0.08 2.04 7.65 -2.39 -0.02 2.03 16 31 H 0.09 1.94 6.85 -2.39 -0.02 1.92 16 32 H 0.11 1.73 8.14 -2.39 -0.02 1.72 16 33 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.08 1.67 8.07 -2.39 -0.02 1.65 16 35 H 0.11 2.14 7.84 -2.39 -0.02 2.13 16 36 H 0.04 1.10 8.12 -2.39 -0.02 1.08 16 37 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -65.90 289.15 -0.20 -66.10 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 1.14 Total: 10.86 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 3.73 Total: -25.53 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -3.86 Total: -81.22 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -3.26 Total: -22.49 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 2.05 Total: 52.27 kcal Total: -65.90 -0.20 -66.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185174212.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.414 kcal (2) G-P(sol) polarization free energy of solvation -65.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds