Wall clock time and date at job start Mon Mar 30 2020 03:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50701 * 109.87679 * 58.97138 * 3 2 1 5 5 O 1.20829 * 119.99923 * 265.70203 * 4 3 2 6 6 O 1.34221 * 120.00233 * 85.70174 * 4 3 2 7 7 C 1.54317 * 109.88707 * 297.77530 * 3 2 1 8 8 C 1.55144 * 103.01264 * 218.30886 * 7 3 2 9 9 C 1.54903 * 101.65557 * 35.65546 * 8 7 3 10 10 N 1.47443 * 109.88698 * 180.02562 * 3 2 1 11 11 C 1.46897 * 110.99934 * 356.15035 * 10 3 2 12 12 C 1.53005 * 109.46564 * 170.00072 * 11 10 3 13 13 C 1.50701 * 109.46805 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00201 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00324 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99511 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00419 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46878 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47016 * 119.99863 * 17 15 13 20 20 H 1.48491 * 109.47247 * 239.99864 * 17 15 13 21 21 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 22 22 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 24 24 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 25 25 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 26 26 H 0.96695 * 117.00385 * 180.02562 * 6 4 3 27 27 H 1.08999 * 110.70720 * 336.68886 * 7 3 2 28 28 H 1.08996 * 110.70738 * 99.92793 * 7 3 2 29 29 H 1.08997 * 110.99111 * 277.55576 * 8 7 3 30 30 H 1.09011 * 111.02263 * 153.76229 * 8 7 3 31 31 H 1.09006 * 110.37155 * 204.10431 * 9 8 7 32 32 H 1.09001 * 110.37918 * 81.75905 * 9 8 7 33 33 H 1.09003 * 109.46883 * 289.99451 * 11 10 3 34 34 H 1.08998 * 109.47493 * 50.00218 * 11 10 3 35 35 H 1.08991 * 109.47310 * 299.99529 * 12 11 10 36 36 H 1.09004 * 109.47401 * 60.00246 * 12 11 10 37 37 H 0.97001 * 119.99782 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5220 2.1691 1.2144 5 8 0.5089 2.8234 1.1406 6 8 2.1861 2.0895 2.3782 7 6 1.5774 2.1629 -1.2839 8 6 2.8034 3.0385 -1.6543 9 6 3.9802 2.1237 -1.2327 10 7 3.5144 1.4533 -0.0006 11 6 4.0508 0.0888 0.0910 12 6 5.5595 0.1160 -0.1618 13 6 6.1098 -1.2839 -0.0684 14 1 5.4495 -2.1102 0.1499 15 6 7.4563 -1.5097 -0.2605 16 7 8.2604 -0.5034 -0.5258 17 14 8.1384 -3.2447 -0.1440 18 1 7.0356 -4.1906 0.1631 19 1 8.7655 -3.6179 -1.4374 20 1 9.1565 -3.3050 0.9352 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.8151 2.5723 3.1293 27 1 1.3650 1.4431 -2.0744 28 1 0.7055 2.7855 -1.0837 29 1 2.8067 3.9671 -1.0835 30 1 2.8303 3.2408 -2.7251 31 1 4.8695 2.7196 -1.0275 32 1 4.1864 1.3879 -2.0101 33 1 3.8562 -0.3120 1.0859 34 1 3.5686 -0.5421 -0.6557 35 1 5.7541 0.5167 -1.1564 36 1 6.0418 0.7469 0.5850 37 1 9.2077 -0.6622 -0.6613 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215206819.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:25 Heat of formation + Delta-G solvation = -93.338164 kcal Electronic energy + Delta-G solvation = -18390.060888 eV Core-core repulsion = 15553.073521 eV Total energy + Delta-G solvation = -2836.987367 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.78984 -38.52607 -35.89683 -33.79613 -33.23095 -31.87856 -28.80838 -27.80778 -24.78071 -23.40491 -23.16987 -21.77127 -19.87417 -18.81814 -17.56649 -16.83642 -16.17891 -15.81752 -14.84372 -14.66560 -14.41459 -14.38475 -13.69861 -13.51545 -12.83302 -12.70705 -12.23542 -12.05078 -11.66650 -11.51199 -11.35142 -11.23099 -11.05445 -10.95859 -10.89274 -10.60307 -10.53974 -10.50508 -10.20983 -9.92370 -9.35952 -9.11692 -8.37958 -7.79919 -6.01679 -4.03975 2.41360 3.29980 3.31565 3.37700 3.41266 4.17913 4.45313 4.68025 4.78196 4.97851 5.24661 5.28329 5.29751 5.34709 5.55945 5.60786 5.71009 5.91530 5.93980 5.97253 6.04044 6.05658 6.23693 6.24116 6.36416 6.41854 6.48286 6.71640 6.90168 7.36962 7.42852 7.69739 7.84839 8.03497 8.19742 8.40640 9.03133 9.59890 11.09774 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031996 B = 0.006191 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.894404 B = 4521.753035 C = 4725.714707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.132 4.132 3 C 0.107 3.893 4 C 0.509 3.491 5 O -0.532 6.532 6 O -0.492 6.492 7 C -0.126 4.126 8 C -0.135 4.135 9 C 0.046 3.954 10 N -0.513 5.513 11 C 0.054 3.946 12 C 0.022 3.978 13 C -0.520 4.520 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.398 0.602 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.033 0.967 35 H 0.019 0.981 36 H 0.024 0.976 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.371 4.419 -0.094 14.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.170 4.170 3 C 0.015 3.985 4 C 0.351 3.649 5 O -0.421 6.421 6 O -0.301 6.301 7 C -0.164 4.164 8 C -0.173 4.173 9 C -0.081 4.081 10 N -0.238 5.238 11 C -0.072 4.072 12 C -0.015 4.015 13 C -0.559 4.559 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.106 0.894 25 H 0.100 0.900 26 H 0.254 0.746 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.037 0.963 36 H 0.043 0.957 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.090 4.678 -0.035 13.901 hybrid contribution 0.039 -1.054 -0.034 1.055 sum -13.051 3.624 -0.069 13.545 Atomic orbital electron populations 1.21863 0.95237 1.01816 1.02337 1.22095 0.96194 0.94114 1.04618 1.21470 0.91647 0.95128 0.90248 1.23418 0.80202 0.77035 0.84250 1.90641 1.25718 1.40476 1.85305 1.84726 1.55471 1.69343 1.20530 1.22861 0.99514 0.99188 0.94837 1.22814 0.94526 0.98632 1.01338 1.23059 0.97643 0.96494 0.90894 1.63628 1.02247 1.20859 1.37037 1.22645 0.99027 0.85427 1.00135 1.19210 0.87678 0.97194 0.97435 1.21202 0.93128 0.93300 1.48288 0.92680 1.24989 0.97137 0.96880 0.95294 1.69979 1.04257 1.30405 1.48585 0.86546 0.79053 0.84841 0.77624 1.19762 1.21057 1.20984 0.92221 0.92242 0.92809 0.89419 0.89976 0.74568 0.90062 0.89282 0.91114 0.90536 0.89677 0.92462 0.91498 0.94929 0.96253 0.95713 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.38 37.16 0.35 -1.50 16 2 C -0.13 -1.85 3.56 -26.73 -0.10 -1.95 16 3 C 0.11 1.64 0.86 -131.76 -0.11 1.53 16 4 C 0.51 7.94 6.20 36.01 0.22 8.17 16 5 O -0.53 -8.80 15.73 -18.75 -0.29 -9.09 16 6 O -0.49 -7.15 13.16 -39.23 -0.52 -7.67 16 7 C -0.13 -1.69 4.91 -24.91 -0.12 -1.81 16 8 C -0.14 -1.82 7.08 -24.59 -0.17 -2.00 16 9 C 0.05 0.78 5.30 -2.33 -0.01 0.77 16 10 N -0.51 -9.24 4.71 -217.11 -1.02 -10.27 16 11 C 0.05 1.10 3.84 -3.82 -0.01 1.09 16 12 C 0.02 0.56 4.64 -27.88 -0.13 0.43 16 13 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 14 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 17 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 21 H 0.06 0.67 7.20 -51.93 -0.37 0.30 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.69 6.82 -51.93 -0.35 0.33 16 24 H 0.09 1.23 6.56 -51.93 -0.34 0.89 16 25 H 0.08 1.22 6.87 -51.93 -0.36 0.86 16 26 H 0.40 3.75 9.10 45.56 0.41 4.16 16 27 H 0.08 0.98 7.69 -51.93 -0.40 0.58 16 28 H 0.09 1.20 6.80 -51.93 -0.35 0.85 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.06 1.00 7.02 -51.93 -0.36 0.64 16 33 H 0.07 1.40 7.33 -51.93 -0.38 1.02 16 34 H 0.03 0.64 5.85 -51.93 -0.30 0.33 16 35 H 0.02 0.51 6.47 -51.93 -0.34 0.17 16 36 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 292.55 15.07 4.41 4.41 Total: -1.00 -31.56 292.55 -7.01 -38.57 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -4.80 Total: 1.96 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -0.50 Total: -8.50 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.29 Total: -36.08 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.81 Total: -16.76 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.56 -7.01 -38.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215206819.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.763 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds