Wall clock time and date at job start Mon Mar 30 2020 03:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50701 * 109.87679 * 58.97138 * 3 2 1 5 5 O 1.20829 * 119.99923 * 265.70203 * 4 3 2 6 6 O 1.34221 * 120.00233 * 85.70174 * 4 3 2 7 7 C 1.54317 * 109.88707 * 297.77530 * 3 2 1 8 8 C 1.55144 * 103.01264 * 218.30886 * 7 3 2 9 9 C 1.54903 * 101.65557 * 35.65546 * 8 7 3 10 10 N 1.47443 * 109.88698 * 180.02562 * 3 2 1 11 11 C 1.46897 * 110.99934 * 356.15035 * 10 3 2 12 12 C 1.53005 * 109.46564 * 170.00072 * 11 10 3 13 13 C 1.50701 * 109.46805 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00201 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00324 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99511 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00419 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46878 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47016 * 119.99863 * 17 15 13 20 20 H 1.48491 * 109.47247 * 239.99864 * 17 15 13 21 21 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 22 22 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 24 24 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 25 25 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 26 26 H 0.96695 * 117.00385 * 180.02562 * 6 4 3 27 27 H 1.08999 * 110.70720 * 336.68886 * 7 3 2 28 28 H 1.08996 * 110.70738 * 99.92793 * 7 3 2 29 29 H 1.08997 * 110.99111 * 277.55576 * 8 7 3 30 30 H 1.09011 * 111.02263 * 153.76229 * 8 7 3 31 31 H 1.09006 * 110.37155 * 204.10431 * 9 8 7 32 32 H 1.09001 * 110.37918 * 81.75905 * 9 8 7 33 33 H 1.09003 * 109.46883 * 289.99451 * 11 10 3 34 34 H 1.08998 * 109.47493 * 50.00218 * 11 10 3 35 35 H 1.08991 * 109.47310 * 299.99529 * 12 11 10 36 36 H 1.09004 * 109.47401 * 60.00246 * 12 11 10 37 37 H 0.97001 * 119.99782 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5220 2.1691 1.2144 5 8 0.5089 2.8234 1.1406 6 8 2.1861 2.0895 2.3782 7 6 1.5774 2.1629 -1.2839 8 6 2.8034 3.0385 -1.6543 9 6 3.9802 2.1237 -1.2327 10 7 3.5144 1.4533 -0.0006 11 6 4.0508 0.0888 0.0910 12 6 5.5595 0.1160 -0.1618 13 6 6.1098 -1.2839 -0.0684 14 1 5.4495 -2.1102 0.1499 15 6 7.4563 -1.5097 -0.2605 16 7 8.2604 -0.5034 -0.5258 17 14 8.1384 -3.2447 -0.1440 18 1 7.0356 -4.1906 0.1631 19 1 8.7655 -3.6179 -1.4374 20 1 9.1565 -3.3050 0.9352 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.8151 2.5723 3.1293 27 1 1.3650 1.4431 -2.0744 28 1 0.7055 2.7855 -1.0837 29 1 2.8067 3.9671 -1.0835 30 1 2.8303 3.2408 -2.7251 31 1 4.8695 2.7196 -1.0275 32 1 4.1864 1.3879 -2.0101 33 1 3.8562 -0.3120 1.0859 34 1 3.5686 -0.5421 -0.6557 35 1 5.7541 0.5167 -1.1564 36 1 6.0418 0.7469 0.5850 37 1 9.2077 -0.6622 -0.6613 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215206819.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:24 Heat of formation + Delta-G solvation = -115.167513 kcal Electronic energy + Delta-G solvation = -18391.007479 eV Core-core repulsion = 15553.073521 eV Total energy + Delta-G solvation = -2837.933958 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.02104 -39.81352 -37.10540 -35.64281 -34.43447 -33.60296 -30.43328 -29.11722 -26.48402 -24.86551 -24.37148 -23.18439 -21.31314 -20.14298 -18.84667 -18.58313 -17.62811 -17.18560 -16.50791 -16.09014 -15.84759 -15.76220 -15.01361 -14.80148 -14.32499 -14.04672 -13.82922 -13.30653 -13.12961 -13.05281 -12.71291 -12.50989 -12.46837 -12.41860 -12.30692 -12.18478 -11.89802 -11.76500 -11.59397 -11.44666 -11.21255 -11.16800 -10.54433 -9.23916 -8.18495 -6.29048 1.19586 1.41410 1.42309 1.55000 2.21755 2.41657 2.90767 3.15622 3.49002 3.65893 3.77242 4.16218 4.16797 4.24062 4.43209 4.47391 4.51919 4.61696 4.67065 4.81896 4.89255 4.95668 5.01623 5.06303 5.09092 5.11675 5.21449 5.30275 5.47666 5.61480 5.66850 5.81242 6.01283 6.08975 6.32437 6.88229 7.10499 7.40027 8.93818 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031996 B = 0.006191 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.894404 B = 4521.753035 C = 4725.714707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.101 3.899 4 C 0.509 3.491 5 O -0.542 6.542 6 O -0.503 6.503 7 C -0.119 4.119 8 C -0.124 4.124 9 C 0.043 3.957 10 N -0.527 5.527 11 C 0.074 3.926 12 C 0.031 3.969 13 C -0.540 4.540 14 H 0.062 0.938 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.964 3.036 18 H -0.261 1.261 19 H -0.278 1.278 20 H -0.281 1.281 21 H 0.070 0.930 22 H 0.075 0.925 23 H 0.043 0.957 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.418 0.582 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.002 0.998 36 H -0.013 1.013 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.795 3.545 -0.545 15.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C 0.009 3.991 4 C 0.352 3.648 5 O -0.432 6.432 6 O -0.314 6.314 7 C -0.157 4.157 8 C -0.161 4.161 9 C -0.084 4.084 10 N -0.252 5.252 11 C -0.052 4.052 12 C -0.006 4.006 13 C -0.579 4.579 14 H 0.080 0.920 15 C -0.196 4.196 16 N -0.572 5.572 17 Si 0.788 3.212 18 H -0.185 1.185 19 H -0.204 1.204 20 H -0.206 1.206 21 H 0.089 0.911 22 H 0.094 0.906 23 H 0.063 0.937 24 H 0.107 0.893 25 H 0.088 0.912 26 H 0.278 0.722 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.021 0.979 36 H 0.006 0.994 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.536 3.814 -0.466 15.036 hybrid contribution 0.493 -0.718 0.159 0.885 sum -14.043 3.096 -0.307 14.384 Atomic orbital electron populations 1.21807 0.93333 1.02966 1.02367 1.22070 0.97809 0.92946 1.04054 1.21662 0.89618 0.96462 0.91338 1.23405 0.80028 0.76798 0.84542 1.90635 1.26118 1.40904 1.85578 1.84682 1.55753 1.69751 1.21220 1.22881 0.99284 0.99375 0.94194 1.22774 0.92734 0.97722 1.02916 1.23022 0.98536 0.96661 0.90193 1.63462 1.04477 1.19230 1.38026 1.22254 0.95707 0.87284 1.00005 1.19031 0.90929 0.95489 0.95173 1.21642 0.93739 0.94430 1.48050 0.92006 1.25929 0.97569 1.01327 0.94770 1.70113 1.04670 1.32888 1.49544 0.85417 0.78441 0.79553 0.77750 1.18452 1.20368 1.20644 0.91145 0.90589 0.93737 0.89296 0.91190 0.72178 0.88253 0.88771 0.91169 0.87929 0.91648 0.93466 0.92122 0.93777 0.97938 0.99447 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.38 71.98 0.68 -2.48 16 2 C -0.13 -3.45 3.56 30.60 0.11 -3.34 16 3 C 0.10 2.95 0.86 3.13 0.00 2.95 16 4 C 0.51 15.25 6.20 71.24 0.44 15.70 16 5 O -0.54 -16.98 15.73 21.96 0.35 -16.64 16 6 O -0.50 -14.18 13.16 -51.33 -0.68 -14.85 16 7 C -0.12 -2.92 4.91 31.78 0.16 -2.76 16 8 C -0.12 -3.12 7.08 31.98 0.23 -2.89 16 9 C 0.04 1.46 5.30 86.78 0.46 1.92 16 10 N -0.53 -18.98 4.71 -840.80 -3.96 -22.94 16 11 C 0.07 3.07 3.84 86.31 0.33 3.40 16 12 C 0.03 1.63 4.64 29.85 0.14 1.77 16 13 C -0.54 -30.33 9.11 25.60 0.23 -30.10 16 14 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 15 C 0.00 0.11 5.46 84.66 0.46 0.57 16 16 N -0.93 -56.49 13.29 21.45 0.28 -56.20 16 17 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 18 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 21 H 0.07 1.36 7.20 -2.38 -0.02 1.35 16 22 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.04 1.04 6.82 -2.39 -0.02 1.02 16 24 H 0.09 2.32 6.56 -2.39 -0.02 2.30 16 25 H 0.07 2.01 6.87 -2.39 -0.02 1.99 16 26 H 0.42 7.41 9.10 -74.06 -0.67 6.74 16 27 H 0.10 2.08 7.69 -2.39 -0.02 2.06 16 28 H 0.09 2.27 6.80 -2.39 -0.02 2.26 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 32 H 0.05 1.67 7.02 -2.39 -0.02 1.65 16 33 H 0.06 2.55 7.33 -2.39 -0.02 2.53 16 34 H 0.04 1.71 5.85 -2.39 -0.01 1.69 16 35 H 0.00 0.13 6.47 -2.39 -0.02 0.11 16 36 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 37 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -67.69 292.55 1.65 -66.04 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.39 Total: 14.00 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 3.24 Total: -15.27 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -3.68 Total: -79.15 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.33 Total: -31.49 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -67.69 1.65 -66.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215206819.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.125 kcal (2) G-P(sol) polarization free energy of solvation -67.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds