Wall clock time and date at job start Mon Mar 30 2020 03:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47334 * 2 1 4 4 C 1.50703 * 109.90781 * 172.59654 * 3 2 1 5 5 O 1.20828 * 119.99730 * 14.52695 * 4 3 2 6 6 O 1.34229 * 119.99960 * 194.52651 * 4 3 2 7 7 C 1.53994 * 109.92103 * 293.70062 * 3 2 1 8 8 C 1.54597 * 105.13926 * 120.57657 * 7 3 2 9 9 C 1.54944 * 102.92200 * 21.95717 * 8 7 3 10 10 N 1.47896 * 109.91559 * 51.29302 * 3 2 1 11 11 C 1.46896 * 111.00292 * 94.80123 * 10 3 2 12 12 C 1.53006 * 109.47411 * 177.25068 * 11 10 3 13 13 C 1.50697 * 109.47174 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00368 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00073 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99621 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00075 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46703 * 90.00006 * 17 15 13 19 19 H 1.48497 * 109.46985 * 209.99908 * 17 15 13 20 20 H 1.48494 * 109.47175 * 330.00201 * 17 15 13 21 21 H 1.09005 * 109.46628 * 295.97080 * 1 2 3 22 22 H 1.08994 * 109.47338 * 175.96888 * 1 2 3 23 23 H 1.09005 * 109.46923 * 55.96610 * 1 2 3 24 24 H 1.08997 * 109.47330 * 120.00480 * 2 1 3 25 25 H 1.09004 * 109.47007 * 240.00633 * 2 1 3 26 26 H 0.96697 * 116.99479 * 180.02562 * 6 4 3 27 27 H 1.08997 * 110.31094 * 239.49572 * 7 3 2 28 28 H 1.08996 * 110.30672 * 1.66195 * 7 3 2 29 29 H 1.08993 * 110.72656 * 140.31763 * 8 7 3 30 30 H 1.09004 * 110.72037 * 263.60403 * 8 7 3 31 31 H 1.08999 * 110.65986 * 81.01974 * 9 8 7 32 32 H 1.08996 * 110.66635 * 203.98293 * 9 8 7 33 33 H 1.09002 * 109.47054 * 297.25379 * 11 10 3 34 34 H 1.08997 * 109.47120 * 57.25148 * 11 10 3 35 35 H 1.09002 * 109.47265 * 300.00181 * 12 11 10 36 36 H 1.08997 * 109.46913 * 59.99953 * 12 11 10 37 37 H 0.97001 * 119.99915 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5359 1.4578 0.1826 5 8 4.1723 0.4407 0.0399 6 8 4.1611 2.6014 0.5037 7 6 1.6663 2.1311 -1.3257 8 6 0.7951 3.3421 -0.9200 9 6 1.2016 3.5825 0.5557 10 7 1.3882 2.2073 1.0851 11 6 2.2205 2.2177 2.2954 12 6 1.5471 3.0733 3.3704 13 6 2.4013 3.0844 4.6118 14 1 3.3314 2.5357 4.6323 15 6 1.9951 3.7941 5.7219 16 7 0.8623 4.4618 5.6971 17 14 3.0536 3.8073 7.2609 18 1 4.0106 4.9410 7.1937 19 1 2.1867 3.9616 8.4566 20 1 3.8051 2.5301 7.3558 21 1 -0.3633 0.4501 0.9240 22 1 -0.3634 -1.0250 -0.0722 23 1 -0.3633 0.5752 -0.8517 24 1 1.8933 -0.5139 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 5.1214 2.5617 0.6098 27 1 2.5644 2.4677 -1.8435 28 1 1.0967 1.4503 -1.9582 29 1 1.0339 4.2115 -1.5324 30 1 -0.2645 3.0967 -0.9931 31 1 2.1331 4.1458 0.6112 32 1 0.4077 4.1003 1.0939 33 1 2.3391 1.1986 2.6636 34 1 3.1995 2.6349 2.0596 35 1 1.4285 4.0923 3.0022 36 1 0.5681 2.6560 3.6062 37 1 0.5763 4.9609 6.4781 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215206862.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:26 Heat of formation + Delta-G solvation = -93.506107 kcal Electronic energy + Delta-G solvation = -18586.334791 eV Core-core repulsion = 15749.340141 eV Total energy + Delta-G solvation = -2836.994649 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.95126 -38.21472 -36.12271 -33.95262 -32.68940 -31.88677 -28.74924 -28.16463 -24.55015 -23.47382 -22.77948 -21.73869 -19.98977 -18.95328 -17.89595 -16.70168 -16.13288 -15.61630 -15.32516 -14.87437 -14.42674 -14.03710 -13.57170 -13.21569 -12.80274 -12.49851 -12.25895 -11.89738 -11.74102 -11.53331 -11.46531 -11.19547 -10.98804 -10.83001 -10.81377 -10.71320 -10.51129 -10.42535 -10.21719 -9.74971 -9.37596 -9.14173 -8.35297 -7.94423 -6.00518 -4.02596 2.33109 3.15995 3.31315 3.37752 3.41346 4.33041 4.49494 4.65665 4.70264 5.00968 5.27998 5.35415 5.37679 5.49005 5.62672 5.72221 5.82342 5.88420 5.93921 6.10130 6.13976 6.19309 6.36537 6.39458 6.46434 6.51633 6.64500 6.70130 6.93753 7.32330 7.35519 7.71080 7.85925 8.01827 8.07885 8.42141 9.03846 9.60948 11.10795 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028419 B = 0.006884 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.016937 B = 4066.156092 C = 4323.172888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 C 0.101 3.899 4 C 0.469 3.531 5 O -0.523 6.523 6 O -0.504 6.504 7 C -0.115 4.115 8 C -0.122 4.122 9 C 0.037 3.963 10 N -0.486 5.486 11 C 0.024 3.976 12 C 0.033 3.967 13 C -0.520 4.520 14 H 0.052 0.948 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.075 0.925 22 H 0.047 0.953 23 H 0.051 0.949 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.399 0.601 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.019 0.981 36 H 0.023 0.977 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.879 -3.472 -14.213 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 C 0.009 3.991 4 C 0.310 3.690 5 O -0.410 6.410 6 O -0.315 6.315 7 C -0.153 4.153 8 C -0.160 4.160 9 C -0.091 4.091 10 N -0.211 5.211 11 C -0.102 4.102 12 C -0.005 4.005 13 C -0.559 4.559 14 H 0.071 0.929 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.094 0.906 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.258 0.742 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.041 0.959 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.027 -3.871 -14.025 14.549 hybrid contribution 2.138 0.341 0.930 2.357 sum 2.165 -3.529 -13.095 13.734 Atomic orbital electron populations 1.21637 0.94032 1.00521 1.03403 1.21310 0.97129 0.91677 1.02476 1.22182 0.83332 0.98441 0.95102 1.24684 0.92511 0.80563 0.71245 1.90657 1.68219 1.34616 1.47474 1.84827 1.27827 1.38083 1.80797 1.22455 1.00292 0.97922 0.94676 1.22530 1.00006 0.96806 0.96625 1.23268 1.01558 0.90818 0.93431 1.65060 1.42903 1.10672 1.02416 1.23094 0.95965 1.01245 0.89874 1.19039 0.96121 0.94177 0.91128 1.21157 1.06410 1.30385 0.97986 0.92948 1.24975 0.95118 0.95471 0.98670 1.69965 1.21207 1.32063 1.29940 0.86609 0.80290 0.78362 0.82828 1.20705 1.21170 1.19939 0.90578 0.93402 0.93014 0.91439 0.91582 0.74178 0.91518 0.89877 0.91065 0.90566 0.92640 0.89169 0.92496 0.92272 0.96281 0.95897 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.44 37.16 0.35 -1.43 16 2 C -0.09 -1.26 4.37 -26.73 -0.12 -1.38 16 3 C 0.10 1.54 0.56 -131.69 -0.07 1.47 16 4 C 0.47 7.69 5.59 36.01 0.20 7.89 16 5 O -0.52 -9.57 16.89 -18.75 -0.32 -9.88 16 6 O -0.50 -7.49 9.84 -39.25 -0.39 -7.88 16 7 C -0.12 -1.41 5.66 -25.37 -0.14 -1.55 16 8 C -0.12 -1.48 7.06 -24.87 -0.18 -1.66 16 9 C 0.04 0.59 5.17 -1.89 -0.01 0.58 16 10 N -0.49 -8.54 3.94 -216.32 -0.85 -9.39 16 11 C 0.02 0.52 3.98 -3.82 -0.02 0.50 16 12 C 0.03 0.84 4.83 -27.88 -0.13 0.71 16 13 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 14 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 17 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H 0.08 1.14 7.56 -51.93 -0.39 0.75 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.59 6.76 -51.93 -0.35 0.24 16 24 H 0.07 1.09 8.11 -51.93 -0.42 0.66 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.40 4.28 9.10 45.56 0.41 4.69 16 27 H 0.07 0.78 7.68 -51.93 -0.40 0.38 16 28 H 0.08 0.87 6.73 -51.93 -0.35 0.52 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.94 7.36 -51.93 -0.38 0.56 16 32 H 0.09 1.56 7.66 -51.93 -0.40 1.16 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.25 4.72 -51.93 -0.25 1.01 16 35 H 0.02 0.51 6.93 -51.93 -0.36 0.15 16 36 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 293.57 15.07 4.42 4.42 Total: -1.00 -31.85 293.57 -6.91 -38.76 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -4.96 Total: 1.54 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -0.53 Total: -8.34 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.12 Total: -35.33 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.70 Total: -17.76 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.85 -6.91 -38.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215206862.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.749 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds