Wall clock time and date at job start Mon Mar 30 2020 03:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47334 * 2 1 4 4 C 1.50703 * 109.90781 * 172.59654 * 3 2 1 5 5 O 1.20828 * 119.99730 * 14.52695 * 4 3 2 6 6 O 1.34229 * 119.99960 * 194.52651 * 4 3 2 7 7 C 1.53994 * 109.92103 * 293.70062 * 3 2 1 8 8 C 1.54597 * 105.13926 * 120.57657 * 7 3 2 9 9 C 1.54944 * 102.92200 * 21.95717 * 8 7 3 10 10 N 1.47896 * 109.91559 * 51.29302 * 3 2 1 11 11 C 1.46896 * 111.00292 * 94.80123 * 10 3 2 12 12 C 1.53006 * 109.47411 * 177.25068 * 11 10 3 13 13 C 1.50697 * 109.47174 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00368 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00073 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99621 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00075 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46703 * 90.00006 * 17 15 13 19 19 H 1.48497 * 109.46985 * 209.99908 * 17 15 13 20 20 H 1.48494 * 109.47175 * 330.00201 * 17 15 13 21 21 H 1.09005 * 109.46628 * 295.97080 * 1 2 3 22 22 H 1.08994 * 109.47338 * 175.96888 * 1 2 3 23 23 H 1.09005 * 109.46923 * 55.96610 * 1 2 3 24 24 H 1.08997 * 109.47330 * 120.00480 * 2 1 3 25 25 H 1.09004 * 109.47007 * 240.00633 * 2 1 3 26 26 H 0.96697 * 116.99479 * 180.02562 * 6 4 3 27 27 H 1.08997 * 110.31094 * 239.49572 * 7 3 2 28 28 H 1.08996 * 110.30672 * 1.66195 * 7 3 2 29 29 H 1.08993 * 110.72656 * 140.31763 * 8 7 3 30 30 H 1.09004 * 110.72037 * 263.60403 * 8 7 3 31 31 H 1.08999 * 110.65986 * 81.01974 * 9 8 7 32 32 H 1.08996 * 110.66635 * 203.98293 * 9 8 7 33 33 H 1.09002 * 109.47054 * 297.25379 * 11 10 3 34 34 H 1.08997 * 109.47120 * 57.25148 * 11 10 3 35 35 H 1.09002 * 109.47265 * 300.00181 * 12 11 10 36 36 H 1.08997 * 109.46913 * 59.99953 * 12 11 10 37 37 H 0.97001 * 119.99915 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5359 1.4578 0.1826 5 8 4.1723 0.4407 0.0399 6 8 4.1611 2.6014 0.5037 7 6 1.6663 2.1311 -1.3257 8 6 0.7951 3.3421 -0.9200 9 6 1.2016 3.5825 0.5557 10 7 1.3882 2.2073 1.0851 11 6 2.2205 2.2177 2.2954 12 6 1.5471 3.0733 3.3704 13 6 2.4013 3.0844 4.6118 14 1 3.3314 2.5357 4.6323 15 6 1.9951 3.7941 5.7219 16 7 0.8623 4.4618 5.6971 17 14 3.0536 3.8073 7.2609 18 1 4.0106 4.9410 7.1937 19 1 2.1867 3.9616 8.4566 20 1 3.8051 2.5301 7.3558 21 1 -0.3633 0.4501 0.9240 22 1 -0.3634 -1.0250 -0.0722 23 1 -0.3633 0.5752 -0.8517 24 1 1.8933 -0.5139 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 5.1214 2.5617 0.6098 27 1 2.5644 2.4677 -1.8435 28 1 1.0967 1.4503 -1.9582 29 1 1.0339 4.2115 -1.5324 30 1 -0.2645 3.0967 -0.9931 31 1 2.1331 4.1458 0.6112 32 1 0.4077 4.1003 1.0939 33 1 2.3391 1.1986 2.6636 34 1 3.1995 2.6349 2.0596 35 1 1.4285 4.0923 3.0022 36 1 0.5681 2.6560 3.6062 37 1 0.5763 4.9609 6.4781 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215206862.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:26 Heat of formation + Delta-G solvation = -115.142892 kcal Electronic energy + Delta-G solvation = -18587.273032 eV Core-core repulsion = 15749.340141 eV Total energy + Delta-G solvation = -2837.932891 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.23119 -39.50557 -37.40546 -35.80360 -34.17050 -33.39265 -30.43235 -29.44074 -26.37477 -24.86388 -23.97648 -23.21280 -21.48144 -20.22547 -19.22738 -18.53309 -17.67683 -17.04228 -16.52591 -16.42767 -16.16858 -15.41736 -14.86650 -14.65042 -14.40441 -13.90092 -13.60635 -13.51101 -13.09857 -13.05263 -12.75127 -12.66779 -12.51738 -12.46017 -12.21209 -12.07056 -11.88918 -11.60117 -11.49330 -11.38991 -11.28485 -11.21928 -10.55317 -9.40226 -8.21435 -6.32273 1.04254 1.38090 1.39442 1.50415 1.98794 2.38689 3.04644 3.11870 3.50639 3.58106 3.89071 4.21974 4.25708 4.37230 4.42781 4.55389 4.62664 4.66871 4.81259 4.83117 4.97993 5.03176 5.07762 5.14135 5.17729 5.30458 5.34352 5.42680 5.47875 5.60899 5.64169 5.77262 5.95504 6.03596 6.27570 6.83241 6.86946 7.36288 8.90359 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028419 B = 0.006884 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.016937 B = 4066.156092 C = 4323.172888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.088 4.088 3 C 0.095 3.905 4 C 0.468 3.532 5 O -0.545 6.545 6 O -0.507 6.507 7 C -0.109 4.109 8 C -0.108 4.108 9 C 0.031 3.969 10 N -0.491 5.491 11 C 0.043 3.957 12 C 0.044 3.956 13 C -0.545 4.545 14 H 0.053 0.947 15 C 0.005 3.995 16 N -0.927 5.927 17 Si 0.963 3.037 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.268 1.268 21 H 0.047 0.953 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.417 0.583 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.001 0.999 36 H -0.010 1.010 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.369 -3.614 -15.529 16.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.126 4.126 3 C 0.003 3.997 4 C 0.310 3.690 5 O -0.434 6.434 6 O -0.321 6.321 7 C -0.147 4.147 8 C -0.146 4.146 9 C -0.096 4.096 10 N -0.216 5.216 11 C -0.084 4.084 12 C 0.007 3.993 13 C -0.583 4.583 14 H 0.071 0.929 15 C -0.193 4.193 16 N -0.567 5.567 17 Si 0.787 3.213 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.192 1.192 21 H 0.067 0.933 22 H 0.083 0.917 23 H 0.091 0.909 24 H 0.059 0.941 25 H 0.103 0.897 26 H 0.279 0.721 27 H 0.096 0.904 28 H 0.128 0.872 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.020 0.980 36 H 0.009 0.991 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.528 -4.005 -15.354 15.877 hybrid contribution 1.987 0.403 1.331 2.425 sum 2.515 -3.602 -14.023 14.695 Atomic orbital electron populations 1.21579 0.92786 1.01740 1.02804 1.21353 0.98145 0.91000 1.02073 1.22387 0.82599 0.98918 0.95759 1.24889 0.93002 0.80391 0.70675 1.90646 1.68807 1.35302 1.48647 1.84759 1.29517 1.37481 1.80296 1.22516 1.01122 0.97993 0.93052 1.22504 1.00722 0.97875 0.93484 1.23291 1.00445 0.89668 0.96237 1.64953 1.42408 1.12033 1.02218 1.22683 0.96171 0.99078 0.90477 1.18819 0.94612 0.93757 0.92115 1.21557 1.06834 1.30643 0.99315 0.92880 1.25893 0.96422 0.94853 1.02149 1.70089 1.22836 1.32657 1.31099 0.85489 0.78572 0.78803 0.78429 1.19547 1.20514 1.19226 0.93349 0.91738 0.90932 0.94069 0.89747 0.72120 0.90435 0.87207 0.88597 0.89329 0.93758 0.91223 0.94081 0.91966 0.98018 0.99147 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.44 71.98 0.68 -2.48 16 2 C -0.09 -2.41 4.37 30.59 0.13 -2.27 16 3 C 0.10 2.77 0.56 2.93 0.00 2.77 16 4 C 0.47 14.91 5.59 71.24 0.40 15.31 16 5 O -0.55 -19.51 16.89 21.96 0.37 -19.14 16 6 O -0.51 -14.61 9.84 -51.41 -0.51 -15.12 16 7 C -0.11 -2.31 5.66 31.47 0.18 -2.13 16 8 C -0.11 -2.33 7.06 31.80 0.22 -2.10 16 9 C 0.03 0.99 5.17 86.65 0.45 1.44 16 10 N -0.49 -17.38 3.94 -838.30 -3.30 -20.69 16 11 C 0.04 1.88 3.98 86.31 0.34 2.23 16 12 C 0.04 2.39 4.83 29.85 0.14 2.53 16 13 C -0.54 -31.63 9.11 25.60 0.23 -31.39 16 14 H 0.05 3.00 7.74 -2.91 -0.02 2.97 16 15 C 0.01 0.30 5.46 84.66 0.46 0.77 16 16 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 17 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 21 H 0.05 1.43 7.56 -2.38 -0.02 1.41 16 22 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.07 1.42 6.76 -2.38 -0.02 1.41 16 24 H 0.04 1.33 8.11 -2.39 -0.02 1.31 16 25 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 26 H 0.42 8.48 9.10 -74.06 -0.67 7.81 16 27 H 0.08 1.52 7.68 -2.39 -0.02 1.50 16 28 H 0.11 1.79 6.73 -2.39 -0.02 1.78 16 29 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.04 1.50 7.36 -2.39 -0.02 1.49 16 32 H 0.07 2.48 7.66 -2.39 -0.02 2.46 16 33 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 2.68 4.72 -2.39 -0.01 2.67 16 35 H 0.00 0.08 6.93 -2.39 -0.02 0.07 16 36 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 37 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -69.76 293.57 2.50 -67.25 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.39 Total: 12.45 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 3.25 Total: -15.33 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -3.02 Total: -76.88 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.14 Total: -34.25 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -69.76 2.50 -67.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215206862.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.889 kcal (2) G-P(sol) polarization free energy of solvation -69.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds