Wall clock time and date at job start Mon Mar 30 2020 03:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47118 * 2 1 4 4 C 1.52995 * 109.47437 * 120.00082 * 2 1 3 5 5 C 1.52999 * 109.47309 * 174.99800 * 4 2 1 6 6 N 1.46497 * 109.47390 * 180.02562 * 5 4 2 7 7 C 1.46083 * 118.73240 * 90.00054 * 6 5 4 8 8 C 1.53021 * 109.92895 * 161.66270 * 7 6 5 9 9 H 1.08995 * 109.60407 * 289.24923 * 8 7 6 10 10 C 1.50694 * 109.60591 * 168.91927 * 8 7 6 11 11 H 1.08000 * 120.00563 * 0.02562 * 10 8 7 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 8 7 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 O 1.43253 * 108.66685 * 49.16495 * 8 7 6 19 19 C 1.42979 * 112.96977 * 291.62474 * 18 8 7 20 20 C 1.33872 * 118.72665 * 270.02585 * 6 5 4 21 21 O 1.21282 * 118.83522 * 1.85855 * 20 6 5 22 22 H 1.09000 * 109.47135 * 299.99449 * 1 2 3 23 23 H 1.08996 * 109.47287 * 59.99734 * 1 2 3 24 24 H 1.09003 * 109.46826 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47135 * 240.00551 * 2 1 3 26 26 H 1.08996 * 109.47545 * 179.97438 * 3 2 1 27 27 H 1.09006 * 109.47218 * 300.00416 * 3 2 1 28 28 H 1.08998 * 109.46837 * 59.99745 * 3 2 1 29 29 H 1.09002 * 109.47037 * 55.00315 * 4 2 1 30 30 H 1.08994 * 109.47505 * 295.00128 * 4 2 1 31 31 H 1.09004 * 109.47039 * 59.99928 * 5 4 2 32 32 H 1.09002 * 109.47394 * 300.00740 * 5 4 2 33 33 H 1.09002 * 109.39690 * 41.52281 * 7 6 5 34 34 H 1.08998 * 109.32013 * 281.75897 * 7 6 5 35 35 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 36 36 H 1.09004 * 109.42926 * 289.51709 * 19 18 8 37 37 H 1.09001 * 109.40218 * 169.72637 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1878 6 7 4.0533 -1.5222 2.3836 7 6 4.1821 -2.9769 2.3506 8 6 5.1063 -3.4445 3.4770 9 1 6.1325 -3.1541 3.2523 10 6 5.0225 -4.9432 3.6105 11 1 4.3747 -5.5083 2.9568 12 6 5.7731 -5.5930 4.5674 13 7 6.5624 -4.9050 5.3632 14 14 5.6687 -7.4507 4.7334 15 1 4.5931 -7.8021 5.6951 16 1 5.3638 -8.0497 3.4092 17 1 6.9663 -7.9771 5.2279 18 8 4.6860 -2.8287 4.7002 19 6 4.9108 -1.4168 4.7201 20 6 4.3638 -0.7962 3.4647 21 8 4.1984 0.4048 3.4300 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5137 -0.8900 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6055 -1.7198 1.2950 30 1 1.7518 -0.1584 2.1369 31 1 3.9995 0.1675 1.1419 32 1 3.8533 -1.3939 0.3000 33 1 4.5987 -3.2817 1.3905 34 1 3.1985 -3.4291 2.4781 35 1 7.0901 -5.3621 6.0365 36 1 5.9811 -1.2209 4.7846 37 1 4.4112 -0.9828 5.5863 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220470346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:55 Heat of formation + Delta-G solvation = -97.820137 kcal Electronic energy + Delta-G solvation = -17980.269341 eV Core-core repulsion = 15143.087621 eV Total energy + Delta-G solvation = -2837.181720 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.89355 -36.86770 -36.58281 -34.35151 -32.76379 -29.91965 -28.96857 -27.17639 -26.22857 -25.03518 -23.20210 -21.62404 -19.96787 -18.09773 -17.18356 -16.61320 -15.76978 -15.22059 -15.03625 -14.65083 -14.39339 -13.94976 -13.69673 -13.32642 -13.20968 -12.61447 -12.51464 -12.27757 -12.13640 -11.82086 -11.35817 -11.22575 -11.11334 -10.98315 -10.83797 -10.64306 -10.56968 -10.40139 -10.03080 -9.61245 -9.25886 -8.66980 -8.28038 -8.05641 -6.19661 -4.34134 3.11944 3.23543 3.30272 3.31910 3.50642 4.28971 4.84454 4.90074 4.92031 4.96484 5.13151 5.44123 5.50404 5.55451 5.61444 5.68632 5.70982 5.82388 5.85956 5.93686 6.05516 6.08027 6.11604 6.13705 6.21529 6.25027 6.34870 6.41968 6.46605 6.93934 7.11921 7.69623 7.77391 8.07115 8.44552 8.64365 8.82722 9.37793 10.88701 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035167 B = 0.005777 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.004561 B = 4845.889640 C = 5407.744485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.128 4.128 5 C 0.107 3.893 6 N -0.603 5.603 7 C 0.088 3.912 8 C 0.205 3.795 9 H 0.027 0.973 10 C -0.531 4.531 11 H 0.070 0.930 12 C 0.080 3.920 13 N -0.858 5.858 14 Si 0.900 3.100 15 H -0.277 1.277 16 H -0.271 1.271 17 H -0.284 1.284 18 O -0.351 6.351 19 C 0.046 3.954 20 C 0.490 3.510 21 O -0.570 6.570 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.265 0.735 36 H 0.074 0.926 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.569 6.288 -8.633 12.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.166 4.166 5 C -0.016 4.016 6 N -0.335 5.335 7 C -0.034 4.034 8 C 0.149 3.851 9 H 0.044 0.956 10 C -0.568 4.568 11 H 0.088 0.912 12 C -0.127 4.127 13 N -0.493 5.493 14 Si 0.727 3.273 15 H -0.203 1.203 16 H -0.196 1.196 17 H -0.210 1.210 18 O -0.270 6.270 19 C -0.035 4.035 20 C 0.279 3.721 21 O -0.450 6.450 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.585 6.764 -8.340 12.597 hybrid contribution 0.055 -0.866 -0.051 0.869 sum -6.530 5.898 -8.391 12.159 Atomic orbital electron populations 1.21826 0.95352 1.01620 1.01500 1.21053 0.95623 0.96428 0.98130 1.21881 1.01368 0.95877 1.01388 1.21968 0.95877 1.00668 0.98126 1.21553 0.94060 0.98562 0.87383 1.47757 1.64132 1.08533 1.13042 1.22512 1.01953 0.76965 1.01969 1.20106 0.91769 0.93566 0.79624 0.95558 1.20823 1.27435 0.88651 1.19921 0.91204 1.25061 0.94030 0.98867 0.94761 1.70015 1.24708 1.35889 1.18717 0.86480 0.77658 0.84530 0.78658 1.20275 1.19576 1.20994 1.88608 1.83459 1.14281 1.40621 1.22488 1.00572 0.86544 0.93900 1.21535 0.77154 0.87197 0.86234 1.90612 1.55444 1.15238 1.83744 0.92757 0.92919 0.92749 0.91316 0.92374 0.93144 0.92600 0.91851 0.91544 0.90025 0.91124 0.91193 0.91810 0.92555 0.90826 0.87600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.19 37.16 0.34 -1.13 16 2 C -0.09 -1.05 2.92 -90.62 -0.26 -1.32 16 3 C -0.15 -1.65 8.95 37.16 0.33 -1.32 16 4 C -0.13 -1.80 5.00 -26.73 -0.13 -1.93 16 5 C 0.11 1.67 5.04 -4.04 -0.02 1.65 16 6 N -0.60 -11.49 2.83 -174.42 -0.49 -11.98 16 7 C 0.09 1.76 5.94 -4.26 -0.03 1.73 16 8 C 0.21 4.99 2.52 -27.88 -0.07 4.92 16 9 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 10 C -0.53 -13.88 8.77 -34.44 -0.30 -14.18 16 11 H 0.07 1.74 7.75 -52.49 -0.41 1.33 16 12 C 0.08 2.14 5.41 -17.82 -0.10 2.04 16 13 N -0.86 -24.07 12.88 55.43 0.71 -23.36 16 14 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 O -0.35 -8.83 9.95 -35.23 -0.35 -9.18 16 19 C 0.05 0.97 6.99 35.83 0.25 1.22 16 20 C 0.49 10.25 7.59 -11.56 -0.09 10.16 16 21 O -0.57 -12.65 16.39 5.56 0.09 -12.56 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.08 1.33 5.72 -51.93 -0.30 1.03 16 32 H 0.07 0.96 7.93 -51.93 -0.41 0.55 16 33 H 0.07 1.26 7.99 -51.93 -0.41 0.84 16 34 H 0.06 1.27 8.10 -51.93 -0.42 0.84 16 35 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 37 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 LS Contribution 303.08 15.07 4.57 4.57 Total: -1.00 -29.49 303.08 -6.64 -36.13 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.07 Total: -0.64 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -0.08 Total: 1.84 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.22 Total: -35.34 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.26 Total: -21.74 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.49 -6.64 -36.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220470346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.691 kcal (2) G-P(sol) polarization free energy of solvation -29.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds