Wall clock time and date at job start Mon Mar 30 2020 03:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47118 * 2 1 4 4 C 1.52995 * 109.47437 * 120.00082 * 2 1 3 5 5 C 1.52999 * 109.47309 * 174.99800 * 4 2 1 6 6 N 1.46497 * 109.47390 * 180.02562 * 5 4 2 7 7 C 1.46083 * 118.73240 * 90.00054 * 6 5 4 8 8 C 1.53021 * 109.92895 * 161.66270 * 7 6 5 9 9 H 1.08995 * 109.60407 * 289.24923 * 8 7 6 10 10 C 1.50694 * 109.60591 * 168.91927 * 8 7 6 11 11 H 1.08000 * 120.00563 * 0.02562 * 10 8 7 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 8 7 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 O 1.43253 * 108.66685 * 49.16495 * 8 7 6 19 19 C 1.42979 * 112.96977 * 291.62474 * 18 8 7 20 20 C 1.33872 * 118.72665 * 270.02585 * 6 5 4 21 21 O 1.21282 * 118.83522 * 1.85855 * 20 6 5 22 22 H 1.09000 * 109.47135 * 299.99449 * 1 2 3 23 23 H 1.08996 * 109.47287 * 59.99734 * 1 2 3 24 24 H 1.09003 * 109.46826 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47135 * 240.00551 * 2 1 3 26 26 H 1.08996 * 109.47545 * 179.97438 * 3 2 1 27 27 H 1.09006 * 109.47218 * 300.00416 * 3 2 1 28 28 H 1.08998 * 109.46837 * 59.99745 * 3 2 1 29 29 H 1.09002 * 109.47037 * 55.00315 * 4 2 1 30 30 H 1.08994 * 109.47505 * 295.00128 * 4 2 1 31 31 H 1.09004 * 109.47039 * 59.99928 * 5 4 2 32 32 H 1.09002 * 109.47394 * 300.00740 * 5 4 2 33 33 H 1.09002 * 109.39690 * 41.52281 * 7 6 5 34 34 H 1.08998 * 109.32013 * 281.75897 * 7 6 5 35 35 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 36 36 H 1.09004 * 109.42926 * 289.51709 * 19 18 8 37 37 H 1.09001 * 109.40218 * 169.72637 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1878 6 7 4.0533 -1.5222 2.3836 7 6 4.1821 -2.9769 2.3506 8 6 5.1063 -3.4445 3.4770 9 1 6.1325 -3.1541 3.2523 10 6 5.0225 -4.9432 3.6105 11 1 4.3747 -5.5083 2.9568 12 6 5.7731 -5.5930 4.5674 13 7 6.5624 -4.9050 5.3632 14 14 5.6687 -7.4507 4.7334 15 1 4.5931 -7.8021 5.6951 16 1 5.3638 -8.0497 3.4092 17 1 6.9663 -7.9771 5.2279 18 8 4.6860 -2.8287 4.7002 19 6 4.9108 -1.4168 4.7201 20 6 4.3638 -0.7962 3.4647 21 8 4.1984 0.4048 3.4300 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5137 -0.8900 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6055 -1.7198 1.2950 30 1 1.7518 -0.1584 2.1369 31 1 3.9995 0.1675 1.1419 32 1 3.8533 -1.3939 0.3000 33 1 4.5987 -3.2817 1.3905 34 1 3.1985 -3.4291 2.4781 35 1 7.0901 -5.3621 6.0365 36 1 5.9811 -1.2209 4.7846 37 1 4.4112 -0.9828 5.5863 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220470346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:55 Heat of formation + Delta-G solvation = -115.844100 kcal Electronic energy + Delta-G solvation = -17981.050919 eV Core-core repulsion = 15143.087621 eV Total energy + Delta-G solvation = -2837.963297 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.53080 -38.48900 -37.91017 -35.81258 -34.74712 -31.53282 -30.46985 -28.03356 -27.86897 -26.84652 -24.58107 -23.33995 -20.93370 -19.77040 -19.06599 -18.28536 -17.43155 -16.77698 -16.46213 -16.28103 -15.99172 -15.33432 -15.17194 -14.60050 -14.53446 -14.28484 -14.03981 -13.62525 -13.24974 -13.04844 -12.99664 -12.77769 -12.71207 -12.33961 -12.18320 -11.93479 -11.84704 -11.58020 -11.50830 -11.35277 -11.14815 -10.64084 -10.00082 -9.68358 -8.20019 -6.41163 1.44948 1.47592 1.48729 1.58973 1.96944 2.42073 2.98399 3.50111 3.64080 3.88205 3.91563 4.02831 4.19545 4.24957 4.38619 4.43761 4.49189 4.54939 4.61921 4.68662 4.76992 4.81808 4.91393 5.00436 5.07760 5.10406 5.23342 5.30316 5.42029 5.46388 5.53720 5.69580 5.91332 6.31636 6.57531 6.81301 7.05725 7.35511 8.89181 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035167 B = 0.005777 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.004561 B = 4845.889640 C = 5407.744485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.120 4.120 5 C 0.104 3.896 6 N -0.600 5.600 7 C 0.101 3.899 8 C 0.200 3.800 9 H -0.001 1.001 10 C -0.548 4.548 11 H 0.081 0.919 12 C 0.027 3.973 13 N -0.898 5.898 14 Si 0.968 3.032 15 H -0.277 1.277 16 H -0.257 1.257 17 H -0.283 1.283 18 O -0.378 6.378 19 C 0.044 3.956 20 C 0.487 3.513 21 O -0.586 6.586 22 H 0.045 0.955 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.265 0.735 36 H 0.073 0.927 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.642 5.619 -10.388 14.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.204 4.204 4 C -0.159 4.159 5 C -0.018 4.018 6 N -0.331 5.331 7 C -0.021 4.021 8 C 0.144 3.856 9 H 0.017 0.983 10 C -0.585 4.585 11 H 0.099 0.901 12 C -0.176 4.176 13 N -0.534 5.534 14 Si 0.793 3.207 15 H -0.203 1.203 16 H -0.180 1.180 17 H -0.209 1.209 18 O -0.297 6.297 19 C -0.036 4.036 20 C 0.276 3.724 21 O -0.468 6.468 22 H 0.064 0.936 23 H 0.088 0.912 24 H 0.076 0.924 25 H 0.104 0.896 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.674 6.093 -10.129 14.093 hybrid contribution 0.397 -0.597 0.488 0.867 sum -7.277 5.496 -9.641 13.271 Atomic orbital electron populations 1.21813 0.94334 1.02021 1.01974 1.21049 0.96444 0.96142 0.97126 1.21875 1.00869 0.95991 1.01708 1.21899 0.94678 1.00709 0.98613 1.21813 0.95005 0.98263 0.86700 1.47784 1.63433 1.08298 1.13583 1.22280 1.01182 0.77322 1.01299 1.20039 0.91466 0.93264 0.80850 0.98326 1.21272 1.27303 0.89935 1.19989 0.90132 1.25948 0.93627 1.03589 0.94472 1.70145 1.25873 1.37798 1.19608 0.85411 0.77410 0.78863 0.79059 1.20293 1.18030 1.20906 1.88519 1.83593 1.16242 1.41380 1.22592 1.00892 0.84915 0.95240 1.21355 0.77386 0.87027 0.86608 1.90603 1.56438 1.15712 1.84087 0.93574 0.91202 0.92405 0.89616 0.93126 0.91127 0.93993 0.91729 0.94127 0.90712 0.88344 0.88700 0.91318 0.92631 0.90968 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.19 71.98 0.66 -1.91 16 2 C -0.09 -1.79 2.92 -10.79 -0.03 -1.82 16 3 C -0.15 -3.02 8.95 71.98 0.64 -2.37 16 4 C -0.12 -3.20 5.00 30.59 0.15 -3.04 16 5 C 0.10 3.05 5.04 86.38 0.44 3.48 16 6 N -0.60 -22.25 2.83 -824.63 -2.34 -24.58 16 7 C 0.10 3.90 5.94 86.47 0.51 4.41 16 8 C 0.20 9.74 2.52 29.85 0.08 9.82 16 9 H 0.00 -0.05 8.10 -2.39 -0.02 -0.07 16 10 C -0.55 -28.43 8.77 25.60 0.22 -28.20 16 11 H 0.08 3.89 7.75 -2.91 -0.02 3.87 16 12 C 0.03 1.44 5.41 84.66 0.46 1.90 16 13 N -0.90 -51.14 12.88 21.45 0.28 -50.86 16 14 Si 0.97 41.13 29.54 68.60 2.03 43.16 16 15 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 16 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 17 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 18 O -0.38 -19.28 9.95 -148.98 -1.48 -20.76 16 19 C 0.04 1.88 6.99 71.12 0.50 2.38 16 20 C 0.49 20.35 7.59 87.69 0.67 21.02 16 21 O -0.59 -25.99 16.39 -3.04 -0.05 -26.04 16 22 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.05 1.10 6.56 -2.39 -0.02 1.09 16 27 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 2.34 5.72 -2.38 -0.01 2.33 16 32 H 0.10 2.36 7.93 -2.39 -0.02 2.34 16 33 H 0.09 3.17 7.99 -2.39 -0.02 3.15 16 34 H 0.07 2.60 8.10 -2.39 -0.02 2.58 16 35 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 36 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 37 H 0.12 4.75 8.14 -2.39 -0.02 4.73 16 Total: -1.00 -62.94 303.08 3.76 -59.18 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 1.03 Total: 14.25 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 4.30 Total: 5.66 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -2.06 Total: -75.45 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -1.53 Total: -46.80 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -62.94 3.76 -59.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220470346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.667 kcal (2) G-P(sol) polarization free energy of solvation -62.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds