Wall clock time and date at job start Mon Mar 30 2020 03:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.46630 * 2 1 4 4 C 1.52998 * 109.46826 * 119.99914 * 2 1 3 5 5 C 1.52999 * 109.46767 * 175.00023 * 4 2 1 6 6 N 1.46500 * 109.47159 * 179.97438 * 5 4 2 7 7 C 1.46089 * 118.73004 * 90.00072 * 6 5 4 8 8 C 1.53026 * 109.92584 * 198.33971 * 7 6 5 9 9 H 1.08996 * 109.60488 * 70.59148 * 8 7 6 10 10 C 1.50699 * 109.60198 * 191.08411 * 8 7 6 11 11 H 1.07997 * 120.00330 * 359.97438 * 10 8 7 12 12 C 1.37882 * 119.99702 * 179.97438 * 10 8 7 13 13 N 1.31509 * 120.00003 * 359.97438 * 12 10 8 14 14 Si 1.86796 * 120.00027 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47302 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47278 * 119.99858 * 14 12 10 17 17 H 1.48503 * 109.47213 * 240.00082 * 14 12 10 18 18 O 1.43246 * 108.66491 * 310.83405 * 8 7 6 19 19 C 1.42977 * 112.97511 * 68.38364 * 18 8 7 20 20 C 1.33872 * 118.73235 * 269.98229 * 6 5 4 21 21 O 1.21283 * 118.82898 * 358.13063 * 20 6 5 22 22 H 1.08993 * 109.46986 * 299.99953 * 1 2 3 23 23 H 1.09002 * 109.47118 * 60.00174 * 1 2 3 24 24 H 1.09001 * 109.46890 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.46986 * 240.00047 * 2 1 3 26 26 H 1.09006 * 109.46379 * 180.02562 * 3 2 1 27 27 H 1.08991 * 109.47735 * 299.99783 * 3 2 1 28 28 H 1.08999 * 109.47118 * 60.00641 * 3 2 1 29 29 H 1.08997 * 109.47630 * 55.00026 * 4 2 1 30 30 H 1.08998 * 109.47573 * 294.99861 * 4 2 1 31 31 H 1.09002 * 109.47325 * 60.00304 * 5 4 2 32 32 H 1.09000 * 109.47354 * 299.99576 * 5 4 2 33 33 H 1.09004 * 109.39561 * 78.19890 * 7 6 5 34 34 H 1.09003 * 109.32143 * 318.42698 * 7 6 5 35 35 H 0.97002 * 120.00200 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.40767 * 190.27702 * 19 18 8 37 37 H 1.08996 * 109.37884 * 70.43830 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 7 4.0532 -1.5211 2.3844 7 6 4.1821 -2.9759 2.3526 8 6 4.2561 -3.5243 3.7793 9 1 3.2833 -3.4240 4.2605 10 6 4.6587 -4.9760 3.7427 11 1 4.8435 -5.4615 2.7959 12 6 4.7910 -5.6845 4.9181 13 7 4.5665 -5.0933 6.0711 14 14 5.2893 -7.4842 4.8728 15 1 5.4812 -7.9095 3.4630 16 1 6.5585 -7.6655 5.6221 17 1 4.2237 -8.3088 5.4973 18 8 5.2332 -2.7729 4.5091 19 6 4.8333 -1.4211 4.7482 20 6 4.3646 -0.7941 3.4646 21 8 4.2648 0.4132 3.4057 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6054 -1.7198 1.2952 30 1 1.7517 -0.1583 2.1370 31 1 3.9995 0.1675 1.1421 32 1 3.8532 -1.3940 0.3003 33 1 5.0895 -3.2472 1.8130 34 1 3.3175 -3.4035 1.8449 35 1 4.6599 -5.5916 6.8981 36 1 5.6798 -0.8567 5.1392 37 1 4.0216 -1.4074 5.4756 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220470410.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:57 Heat of formation + Delta-G solvation = -115.993495 kcal Electronic energy + Delta-G solvation = -18007.808463 eV Core-core repulsion = 15169.838687 eV Total energy + Delta-G solvation = -2837.969776 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.53513 -38.48937 -37.92061 -35.81094 -34.75098 -31.52685 -30.47498 -28.03345 -27.89812 -26.85698 -24.59860 -23.27370 -20.91068 -19.87344 -19.05425 -18.22690 -17.52961 -16.81018 -16.47219 -16.21916 -15.80040 -15.54691 -15.14716 -14.64366 -14.49775 -14.27447 -14.01917 -13.64240 -13.24574 -13.09568 -12.96809 -12.80342 -12.72538 -12.31156 -12.22085 -11.93107 -11.82317 -11.58784 -11.48985 -11.36212 -11.17052 -10.64690 -9.99807 -9.68428 -8.20406 -6.41539 1.44351 1.46683 1.48369 1.60192 1.96928 2.41743 2.98131 3.50054 3.63738 3.87287 3.91290 4.01863 4.19267 4.25566 4.36532 4.43897 4.50392 4.52890 4.63434 4.67438 4.77728 4.81216 4.90562 4.99702 5.07183 5.09847 5.23874 5.29268 5.41747 5.45988 5.53099 5.69565 5.91120 6.31569 6.57272 6.81120 7.05578 7.35264 8.89045 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033176 B = 0.005889 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.793381 B = 4753.232086 C = 5281.451309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 C -0.147 4.147 4 C -0.122 4.122 5 C 0.104 3.896 6 N -0.600 5.600 7 C 0.101 3.899 8 C 0.201 3.799 9 H -0.003 1.003 10 C -0.547 4.547 11 H 0.081 0.919 12 C 0.027 3.973 13 N -0.898 5.898 14 Si 0.969 3.031 15 H -0.257 1.257 16 H -0.283 1.283 17 H -0.278 1.278 18 O -0.378 6.378 19 C 0.044 3.956 20 C 0.487 3.513 21 O -0.586 6.586 22 H 0.045 0.955 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.265 0.735 36 H 0.124 0.876 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.033 5.869 -11.336 13.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 C -0.204 4.204 4 C -0.161 4.161 5 C -0.018 4.018 6 N -0.331 5.331 7 C -0.021 4.021 8 C 0.145 3.855 9 H 0.015 0.985 10 C -0.584 4.584 11 H 0.099 0.901 12 C -0.177 4.177 13 N -0.535 5.535 14 Si 0.793 3.207 15 H -0.180 1.180 16 H -0.209 1.209 17 H -0.203 1.203 18 O -0.297 6.297 19 C -0.036 4.036 20 C 0.276 3.724 21 O -0.469 6.469 22 H 0.064 0.936 23 H 0.088 0.912 24 H 0.076 0.924 25 H 0.105 0.895 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.141 0.859 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.912 6.358 -11.134 13.730 hybrid contribution 0.028 -0.634 0.628 0.893 sum -4.884 5.724 -10.506 12.923 Atomic orbital electron populations 1.21819 0.94372 1.02021 1.01981 1.21044 0.96406 0.96163 0.97086 1.21875 1.00904 0.95949 1.01716 1.21923 0.94760 1.00747 0.98655 1.21785 0.94809 0.98404 0.86795 1.47787 1.63372 1.08280 1.13677 1.22276 1.02552 0.77268 1.00034 1.20028 0.88307 0.91131 0.86064 0.98540 1.21301 1.50292 0.92795 0.94011 0.90084 1.25952 0.93589 1.03172 0.94958 1.70149 1.46792 1.38307 0.98220 0.85353 0.77685 0.78692 0.78950 1.18023 1.20932 1.20324 1.88514 1.45033 1.19248 1.76917 1.22595 1.02038 0.86196 0.92799 1.21355 0.76821 0.87145 0.87059 1.90601 1.56581 1.15192 1.84517 0.93609 0.91152 0.92430 0.89536 0.93066 0.91100 0.94013 0.91718 0.94206 0.90549 0.88329 0.91012 0.88922 0.92630 0.85876 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.19 71.99 0.66 -1.96 16 2 C -0.09 -1.78 2.92 -10.79 -0.03 -1.82 16 3 C -0.15 -3.02 8.95 71.98 0.64 -2.37 16 4 C -0.12 -3.27 5.00 30.59 0.15 -3.12 16 5 C 0.10 3.04 5.07 86.38 0.44 3.48 16 6 N -0.60 -22.28 2.83 -824.60 -2.34 -24.61 16 7 C 0.10 3.88 5.89 86.47 0.51 4.39 16 8 C 0.20 9.81 2.52 29.86 0.08 9.88 16 9 H 0.00 -0.16 8.09 -2.39 -0.02 -0.18 16 10 C -0.55 -28.39 8.77 25.60 0.22 -28.16 16 11 H 0.08 3.92 7.75 -2.91 -0.02 3.90 16 12 C 0.03 1.42 5.41 84.66 0.46 1.88 16 13 N -0.90 -51.22 12.88 21.45 0.28 -50.95 16 14 Si 0.97 41.16 29.54 68.60 2.03 43.19 16 15 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 16 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 18 O -0.38 -19.27 9.95 -148.98 -1.48 -20.75 16 19 C 0.04 1.89 6.98 71.13 0.50 2.39 16 20 C 0.49 20.38 7.59 87.69 0.67 21.04 16 21 O -0.59 -26.04 16.36 -3.04 -0.05 -26.09 16 22 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.05 1.11 6.57 -2.38 -0.02 1.10 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 2.39 5.65 -2.39 -0.01 2.38 16 32 H 0.10 2.36 8.04 -2.39 -0.02 2.34 16 33 H 0.07 2.69 8.10 -2.38 -0.02 2.67 16 34 H 0.09 3.14 8.13 -2.39 -0.02 3.12 16 35 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 36 H 0.12 4.79 8.14 -2.39 -0.02 4.77 16 37 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -63.05 303.21 3.76 -59.29 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 1.03 Total: 14.28 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 4.29 Total: 5.63 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -2.06 Total: -75.56 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -1.53 Total: -46.83 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -63.05 3.76 -59.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220470410.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.699 kcal (2) G-P(sol) polarization free energy of solvation -63.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds