Wall clock time and date at job start Mon Mar 30 2020 03:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00033 * 2 1 4 4 H 1.48499 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46891 * 299.99992 * 3 2 1 6 6 H 1.48498 * 109.46942 * 60.00122 * 3 2 1 7 7 C 1.37877 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00439 * 185.24732 * 7 2 1 9 9 C 1.50704 * 119.99619 * 5.24646 * 7 2 1 10 10 C 1.53002 * 115.55263 * 275.41418 * 9 7 2 11 11 N 1.46892 * 109.47446 * 270.10428 * 10 9 7 12 12 C 1.46893 * 111.00317 * 184.63230 * 11 10 9 13 13 C 1.52997 * 109.47578 * 185.21948 * 12 11 10 14 14 O 1.42905 * 110.45827 * 57.99788 * 13 12 11 15 15 C 1.54508 * 110.51691 * 180.60804 * 13 12 11 16 16 C 1.54473 * 104.06664 * 118.77747 * 15 13 12 17 17 O 1.44428 * 104.80349 * 23.98219 * 16 15 13 18 18 C 1.44424 * 105.27460 * 319.48715 * 17 16 15 19 19 C 1.52998 * 117.51705 * 61.11952 * 9 7 2 20 20 C 1.53000 * 60.00228 * 107.47963 * 19 9 7 21 21 H 0.96999 * 120.00053 * 4.99947 * 1 2 3 22 22 H 1.08997 * 109.46678 * 150.09795 * 10 9 7 23 23 H 1.09003 * 109.46579 * 30.10368 * 10 9 7 24 24 H 1.00905 * 111.00017 * 308.58119 * 11 10 9 25 25 H 1.09004 * 109.47608 * 65.21203 * 12 11 10 26 26 H 1.09006 * 109.46930 * 305.21646 * 12 11 10 27 27 H 0.96700 * 113.99714 * 302.60808 * 14 13 12 28 28 H 1.09003 * 110.51027 * 0.13093 * 15 13 12 29 29 H 1.09003 * 110.63122 * 237.48466 * 15 13 12 30 30 H 1.08997 * 110.37270 * 142.81096 * 16 15 13 31 31 H 1.09001 * 110.37218 * 265.15254 * 16 15 13 32 32 H 1.09005 * 110.37141 * 281.68484 * 18 17 16 33 33 H 1.09001 * 110.46792 * 159.39076 * 18 17 16 34 34 H 1.09000 * 117.50108 * 214.96689 * 19 9 7 35 35 H 1.09003 * 117.49917 * 359.97438 * 19 9 7 36 36 H 1.09005 * 117.50062 * 252.51209 * 20 19 9 37 37 H 1.09002 * 117.50157 * 107.48988 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0812 -1.1960 0.0850 9 6 1.2558 -2.4964 -0.1205 10 6 0.7065 -3.0649 1.1895 11 7 1.7128 -3.9417 1.8029 12 6 1.1801 -4.5927 3.0071 13 6 2.2919 -5.3926 3.6888 14 8 3.3886 -4.5393 4.0224 15 6 1.7532 -6.1007 4.9520 16 6 1.9630 -7.6027 4.6588 17 8 3.0312 -7.6434 3.6875 18 6 2.7637 -6.5508 2.7818 19 6 0.4323 -2.7240 -1.3897 20 6 1.7374 -3.4935 -1.1763 21 1 -0.4850 0.8368 -0.0732 22 1 -0.1985 -3.6371 0.9859 23 1 0.4735 -2.2468 1.8711 24 1 2.0485 -4.6253 1.1409 25 1 0.3680 -5.2642 2.7282 26 1 0.8046 -3.8343 3.6942 27 1 3.7657 -4.0696 3.2659 28 1 0.6941 -5.8827 5.0896 29 1 2.3214 -5.8004 5.8324 30 1 2.2558 -8.1294 5.5670 31 1 1.0548 -8.0386 4.2424 32 1 1.9782 -6.8253 2.0776 33 1 3.6704 -6.2685 2.2467 34 1 -0.5008 -3.2787 -1.2915 35 1 0.4316 -1.9315 -2.1381 36 1 2.5956 -3.2073 -1.7845 37 1 1.6629 -4.5544 -0.9377 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227138305.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:30 Heat of formation + Delta-G solvation = -93.611054 kcal Electronic energy + Delta-G solvation = -17909.277532 eV Core-core repulsion = 15072.278332 eV Total energy + Delta-G solvation = -2836.999200 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.93498 -38.89253 -37.28978 -35.30333 -33.91232 -32.34686 -30.00579 -27.92912 -26.92112 -25.03699 -23.47996 -22.77649 -21.37015 -20.82059 -18.46960 -17.83005 -17.17819 -17.09096 -16.61246 -16.34449 -16.02349 -15.35056 -15.23371 -14.95404 -14.27055 -13.99350 -13.68676 -13.58815 -13.18242 -12.97386 -12.90948 -12.63813 -12.45370 -12.41071 -12.33614 -12.03529 -11.73795 -11.35356 -11.09868 -10.72059 -10.53207 -10.40223 -9.97924 -9.23774 -8.07919 -6.16524 1.40795 1.44720 1.54574 2.45922 2.93317 3.08989 3.22811 3.26269 3.57818 3.66385 3.82288 3.97565 4.16782 4.27701 4.36170 4.47919 4.59722 4.64281 4.67303 4.68433 4.75234 4.79494 4.85838 4.95010 5.00770 5.02780 5.09811 5.28113 5.63347 5.73372 5.76261 5.87715 6.17246 6.44006 6.61000 6.83446 6.89834 7.51017 9.00952 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033532 B = 0.005681 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.811482 B = 4927.619473 C = 5262.289454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.023 3.977 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.286 1.286 7 C -0.492 4.492 8 H 0.050 0.950 9 C 0.022 3.978 10 C 0.127 3.873 11 N -0.681 5.681 12 C 0.042 3.958 13 C 0.108 3.892 14 O -0.565 6.565 15 C -0.145 4.145 16 C 0.043 3.957 17 O -0.394 6.394 18 C 0.022 3.978 19 C -0.169 4.169 20 C -0.180 4.180 21 H 0.257 0.743 22 H 0.007 0.993 23 H 0.041 0.959 24 H 0.340 0.660 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.391 0.609 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.279 -13.136 6.386 14.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.177 4.177 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.212 1.212 7 C -0.530 4.530 8 H 0.069 0.931 9 C 0.021 3.979 10 C -0.002 4.002 11 N -0.314 5.314 12 C -0.088 4.088 13 C 0.066 3.934 14 O -0.373 6.373 15 C -0.183 4.183 16 C -0.033 4.033 17 O -0.313 6.313 18 C -0.055 4.055 19 C -0.207 4.207 20 C -0.217 4.217 21 H 0.066 0.934 22 H 0.025 0.975 23 H 0.059 0.941 24 H 0.159 0.841 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.241 0.759 28 H 0.120 0.880 29 H 0.101 0.899 30 H 0.127 0.873 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.484 -12.872 7.392 14.918 hybrid contribution -0.531 1.081 -1.160 1.672 sum 0.953 -11.792 6.232 13.371 Atomic orbital electron populations 1.70113 1.06912 1.27081 1.50878 1.25599 0.95500 1.01673 0.94895 0.85722 0.79332 0.80590 0.77279 1.19306 1.20821 1.21186 1.20735 0.92546 0.90306 1.49461 0.93131 1.18952 0.98361 0.93922 0.86657 1.21206 0.90197 0.93478 0.95342 1.60231 1.38656 1.23796 1.08684 1.22587 0.95799 0.97239 0.93142 1.22581 0.86555 0.89429 0.94788 1.86407 1.49065 1.62103 1.39737 1.22999 1.02912 0.95169 0.97217 1.23629 0.91052 0.95298 0.93330 1.89104 1.48723 1.51186 1.42292 1.24167 1.02286 0.86271 0.92751 1.22504 0.93540 1.01526 1.03114 1.22907 0.97096 0.96412 1.05325 0.93365 0.97507 0.94056 0.84061 0.93344 0.91541 0.75850 0.87953 0.89852 0.87264 0.90388 0.90698 0.88358 0.91047 0.92569 0.90472 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.67 12.92 21.45 0.28 -51.39 16 2 C 0.02 1.23 5.40 84.66 0.46 1.69 16 3 Si 0.94 43.54 29.54 68.60 2.03 45.57 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 7 C -0.49 -26.38 8.77 25.60 0.22 -26.15 16 8 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 9 C 0.02 1.02 1.61 -52.93 -0.08 0.93 16 10 C 0.13 5.36 5.74 86.31 0.50 5.86 16 11 N -0.68 -22.86 5.86 -513.91 -3.01 -25.87 16 12 C 0.04 1.18 4.61 86.30 0.40 1.58 16 13 C 0.11 2.76 1.24 -9.78 -0.01 2.74 16 14 O -0.56 -17.04 13.01 -148.98 -1.94 -18.97 16 15 C -0.14 -3.02 6.54 31.61 0.21 -2.82 16 16 C 0.04 0.80 7.63 72.48 0.55 1.36 16 17 O -0.39 -10.01 11.65 -148.98 -1.74 -11.74 16 18 C 0.02 0.53 6.13 72.49 0.44 0.97 16 19 C -0.17 -7.62 9.39 30.59 0.29 -7.33 16 20 C -0.18 -7.09 9.36 30.60 0.29 -6.81 16 21 H 0.26 14.01 8.32 -92.71 -0.77 13.24 16 22 H 0.01 0.28 7.87 -2.39 -0.02 0.26 16 23 H 0.04 2.04 8.04 -2.39 -0.02 2.02 16 24 H 0.34 10.27 6.65 -89.69 -0.60 9.67 16 25 H 0.05 1.21 8.10 -2.38 -0.02 1.19 16 26 H 0.07 2.07 8.13 -2.38 -0.02 2.06 16 27 H 0.39 11.24 8.48 -74.06 -0.63 10.62 16 28 H 0.10 1.77 7.73 -2.39 -0.02 1.75 16 29 H 0.08 1.85 8.00 -2.39 -0.02 1.83 16 30 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.57 7.84 -2.38 -0.02 1.56 16 33 H 0.10 2.31 8.09 -2.39 -0.02 2.29 16 34 H 0.07 3.01 8.03 -2.39 -0.02 2.99 16 35 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.08 3.06 8.14 -2.38 -0.02 3.04 16 37 H 0.09 3.03 7.43 -2.39 -0.02 3.02 16 Total: -1.00 -61.19 303.83 -1.29 -62.48 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: -0.16 Total: 27.91 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: 3.26 Total: -27.98 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -2.74 Total: -77.26 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -3.67 Total: -30.72 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -61.19 -1.29 -62.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227138305.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.132 kcal (2) G-P(sol) polarization free energy of solvation -61.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds