Wall clock time and date at job start Mon Mar 30 2020 03:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47432 * 2 1 4 4 C 1.53006 * 109.46999 * 119.99960 * 2 1 3 5 5 C 1.50698 * 110.28949 * 65.00744 * 4 2 1 6 6 O 1.20823 * 120.00073 * 358.57936 * 5 4 2 7 7 O 1.34227 * 119.99880 * 178.57265 * 5 4 2 8 8 C 1.54261 * 110.32323 * 302.87964 * 4 2 1 9 9 C 1.54379 * 105.06276 * 241.10516 * 8 4 2 10 10 N 1.48558 * 104.59242 * 336.14906 * 9 8 4 11 11 C 1.46903 * 110.99597 * 159.04234 * 10 9 8 12 12 C 1.50693 * 109.47512 * 69.87283 * 11 10 9 13 13 H 1.08004 * 119.99641 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00208 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99876 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99840 * 179.72414 * 14 12 11 17 17 H 1.48500 * 109.47300 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47140 * 120.00332 * 16 14 12 19 19 H 1.48502 * 109.46905 * 239.99618 * 16 14 12 20 20 C 1.48557 * 104.22232 * 39.48183 * 10 9 8 21 21 H 1.09005 * 109.47286 * 300.00038 * 1 2 3 22 22 H 1.08998 * 109.47408 * 59.99731 * 1 2 3 23 23 H 1.08997 * 109.47327 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47327 * 239.99622 * 2 1 3 25 25 H 1.09001 * 109.46649 * 307.34163 * 3 2 1 26 26 H 1.09004 * 109.47061 * 67.34359 * 3 2 1 27 27 H 1.08999 * 109.47287 * 187.34302 * 3 2 1 28 28 H 0.96701 * 116.99729 * 180.02562 * 7 5 4 29 29 H 1.09001 * 110.31990 * 122.20876 * 8 4 2 30 30 H 1.09000 * 110.40740 * 0.04884 * 8 4 2 31 31 H 1.08998 * 110.40865 * 217.36778 * 9 8 4 32 32 H 1.08999 * 110.41119 * 94.92778 * 9 8 4 33 33 H 1.09002 * 109.46884 * 309.86828 * 11 10 9 34 34 H 1.09009 * 109.46839 * 189.87236 * 11 10 9 35 35 H 0.97000 * 119.99952 * 179.97438 * 15 14 12 36 36 H 1.09003 * 110.41274 * 79.30187 * 20 10 9 37 37 H 1.09000 * 110.40965 * 201.73680 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6511 -2.1766 1.2078 6 8 1.0015 -2.6022 0.2822 7 8 2.0265 -3.0001 2.1991 8 6 1.4781 -0.0526 2.5209 9 6 2.7186 0.4398 3.2967 10 7 3.8268 -0.4271 2.8199 11 6 5.1309 0.2033 3.0648 12 6 5.4106 0.2201 4.5454 13 1 4.6917 -0.1963 5.2355 14 6 6.5848 0.7660 5.0190 15 7 7.4609 1.2717 4.1785 16 14 6.9280 0.7938 6.8550 17 1 5.7911 0.1725 7.5806 18 1 8.1709 0.0318 7.1379 19 1 7.0955 2.1987 7.3061 20 6 3.5726 -0.5765 1.3639 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.5734 1.9928 -0.8171 26 1 1.7879 1.9170 0.9484 27 1 3.1221 1.4453 -0.1313 28 1 1.7537 -3.9252 2.1283 29 1 0.9226 -0.7776 3.1158 30 1 0.8381 0.7892 2.2565 31 1 2.5712 0.3130 4.3692 32 1 2.9245 1.4840 3.0613 33 1 5.1173 1.2252 2.6859 34 1 5.9098 -0.3632 2.5542 35 1 8.2868 1.6561 4.5118 36 1 3.9122 0.3085 0.8258 37 1 4.0683 -1.4686 0.9811 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232780890.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:31 Heat of formation + Delta-G solvation = -93.286251 kcal Electronic energy + Delta-G solvation = -18447.820540 eV Core-core repulsion = 15610.835425 eV Total energy + Delta-G solvation = -2836.985116 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.78149 -38.33410 -36.09099 -34.84045 -32.66862 -30.33993 -28.81242 -27.33726 -26.35849 -23.21996 -22.37404 -22.02858 -20.14897 -18.58224 -17.68296 -16.67691 -16.32138 -15.46541 -15.33063 -14.49378 -14.25466 -14.10086 -13.37519 -13.14739 -12.84367 -12.48822 -12.26879 -12.02198 -11.90329 -11.51547 -11.41132 -11.23333 -11.09452 -10.97139 -10.82952 -10.61529 -10.45025 -10.38103 -10.30627 -9.88944 -9.77401 -9.16781 -8.44270 -7.38123 -6.03579 -4.04491 2.40203 3.26345 3.30899 3.38429 3.43570 4.41402 4.55923 4.71316 4.98244 5.17411 5.24436 5.31158 5.34198 5.39477 5.62804 5.69012 5.74171 5.84475 5.91270 5.99563 6.02360 6.13764 6.15448 6.26553 6.41723 6.44015 6.54756 6.60217 6.75740 7.12831 7.26259 7.75406 7.97100 8.14383 8.17305 8.48604 9.03715 9.59939 11.07676 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035256 B = 0.006333 C = 0.005917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.991765 B = 4420.169890 C = 4730.943361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.071 4.071 3 C -0.152 4.152 4 C -0.052 4.052 5 C 0.499 3.501 6 O -0.528 6.528 7 O -0.492 6.492 8 C -0.112 4.112 9 C 0.049 3.951 10 N -0.497 5.497 11 C 0.182 3.818 12 C -0.504 4.504 13 H 0.064 0.936 14 C 0.054 3.946 15 N -0.900 5.900 16 Si 0.898 3.102 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.042 3.958 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.400 0.600 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.040 0.960 33 H -0.006 1.006 34 H 0.030 0.970 35 H 0.260 0.740 36 H 0.057 0.943 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.276 -2.295 -6.525 14.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.090 4.090 3 C -0.209 4.209 4 C -0.054 4.054 5 C 0.343 3.657 6 O -0.418 6.418 7 O -0.300 6.300 8 C -0.150 4.150 9 C -0.080 4.080 10 N -0.221 5.221 11 C 0.056 3.944 12 C -0.543 4.543 13 H 0.082 0.918 14 C -0.147 4.147 15 N -0.539 5.539 16 Si 0.726 3.274 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.087 4.087 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.257 0.743 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.012 0.988 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.114 -2.418 -6.446 13.934 hybrid contribution 0.266 0.174 0.476 0.572 sum -11.848 -2.245 -5.970 13.455 Atomic orbital electron populations 1.22030 0.94748 1.03045 1.01400 1.20935 0.96315 0.95878 0.95849 1.22007 1.01607 0.95076 1.02225 1.21334 0.98668 0.87366 0.98033 1.23257 0.74762 0.89316 0.78376 1.90631 1.37994 1.77808 1.35380 1.84746 1.72977 1.24389 1.47911 1.22548 0.98803 0.99944 0.93747 1.22915 0.89770 0.95190 1.00093 1.65551 1.04108 1.44696 1.07759 1.19900 0.84686 0.92247 0.97548 1.21158 1.03588 1.37798 0.91711 0.91793 1.24992 0.96116 0.95506 0.98058 1.69967 1.09555 1.40300 1.34120 0.86443 0.78254 0.77520 0.85222 1.19639 1.21037 1.21142 1.23201 0.90436 1.01441 0.93627 0.92671 0.92765 0.91190 0.90504 0.92377 0.91958 0.91845 0.74292 0.91086 0.90443 0.90098 0.94186 0.98776 0.95149 0.92997 0.92471 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 8.65 37.15 0.32 -1.52 16 2 C -0.07 -0.93 1.98 -90.62 -0.18 -1.11 16 3 C -0.15 -1.85 8.49 37.16 0.32 -1.54 16 4 C -0.05 -0.78 0.51 -154.28 -0.08 -0.86 16 5 C 0.50 7.64 6.42 36.00 0.23 7.88 16 6 O -0.53 -8.64 14.81 -18.75 -0.28 -8.92 16 7 O -0.49 -7.03 13.19 -39.25 -0.52 -7.55 16 8 C -0.11 -1.66 5.06 -25.35 -0.13 -1.78 16 9 C 0.05 0.90 5.97 -2.18 -0.01 0.89 16 10 N -0.50 -10.51 5.36 -231.41 -1.24 -11.75 16 11 C 0.18 4.66 4.57 -4.98 -0.02 4.64 16 12 C -0.50 -14.04 8.82 -34.44 -0.30 -14.34 16 13 H 0.06 1.78 7.61 -52.48 -0.40 1.38 16 14 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 15 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 16 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 C 0.04 0.74 5.30 -2.19 -0.01 0.72 16 21 H 0.05 0.61 6.33 -51.93 -0.33 0.28 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.07 0.93 5.97 -51.93 -0.31 0.62 16 24 H 0.08 1.04 8.01 -51.93 -0.42 0.62 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.77 6.52 -51.93 -0.34 0.43 16 27 H 0.06 0.83 6.19 -51.93 -0.32 0.50 16 28 H 0.40 3.72 9.10 45.56 0.41 4.14 16 29 H 0.07 1.03 7.64 -51.93 -0.40 0.63 16 30 H 0.08 0.98 5.13 -51.93 -0.27 0.72 16 31 H 0.08 1.56 7.94 -51.93 -0.41 1.14 16 32 H 0.04 0.75 7.82 -51.93 -0.41 0.35 16 33 H -0.01 -0.15 7.88 -51.93 -0.41 -0.56 16 34 H 0.03 0.84 8.13 -51.92 -0.42 0.42 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.06 0.99 5.32 -51.93 -0.28 0.72 16 37 H 0.07 1.29 7.85 -51.93 -0.41 0.88 16 LS Contribution 290.78 15.07 4.38 4.38 Total: -1.00 -31.39 290.78 -6.58 -37.97 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -4.68 Total: 0.77 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 0.03 Total: -5.60 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.50 Total: -37.57 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.80 Total: -16.47 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.39 -6.58 -37.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232780890.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.318 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds