Wall clock time and date at job start Mon Mar 30 2020 03:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.53245 * 2 1 4 4 C 1.53121 * 109.49931 * 120.09660 * 2 1 3 5 5 C 1.53126 * 109.15720 * 177.59493 * 4 2 1 6 6 C 1.53031 * 109.27928 * 302.34993 * 5 4 2 7 7 N 1.46836 * 109.52854 * 59.17566 * 6 5 4 8 8 C 1.46898 * 111.00430 * 174.15874 * 7 6 5 9 9 C 1.50706 * 109.46984 * 66.04915 * 8 7 6 10 10 H 1.07998 * 119.99501 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00436 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00481 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99886 * 359.72901 * 11 9 8 14 14 H 1.48502 * 109.46964 * 270.27509 * 13 11 9 15 15 H 1.48505 * 109.47036 * 30.26897 * 13 11 9 16 16 H 1.48490 * 109.47395 * 150.27411 * 13 11 9 17 17 C 1.46847 * 111.19881 * 298.26127 * 7 6 5 18 18 H 1.08997 * 109.46146 * 301.72243 * 17 7 6 19 19 C 1.50708 * 109.46338 * 181.75600 * 17 7 6 20 20 O 1.20834 * 119.99547 * 339.99978 * 19 17 7 21 21 O 1.34224 * 120.00000 * 159.99917 * 19 17 7 22 22 H 1.08998 * 109.47678 * 299.90160 * 1 2 3 23 23 H 1.08999 * 109.47212 * 59.90415 * 1 2 3 24 24 H 1.09006 * 109.47383 * 179.89904 * 1 2 3 25 25 H 1.09005 * 109.46715 * 180.09404 * 3 2 1 26 26 H 1.09000 * 109.47429 * 300.09175 * 3 2 1 27 27 H 1.08999 * 109.47276 * 60.09636 * 3 2 1 28 28 H 1.09001 * 109.52092 * 57.69457 * 4 2 1 29 29 H 1.08996 * 109.57708 * 297.52827 * 4 2 1 30 30 H 1.08999 * 109.50051 * 182.40285 * 5 4 2 31 31 H 1.09005 * 109.53436 * 62.30959 * 5 4 2 32 32 H 1.09010 * 109.46146 * 299.15975 * 6 5 4 33 33 H 1.09004 * 109.45840 * 179.19901 * 6 5 4 34 34 H 1.09004 * 109.47320 * 306.05319 * 8 7 6 35 35 H 1.09001 * 109.47291 * 186.04616 * 8 7 6 36 36 H 0.96999 * 120.00235 * 179.72806 * 12 11 9 37 37 H 0.96703 * 116.99607 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0415 1.4419 0.0000 4 6 2.0411 -0.7238 1.2488 5 6 3.5711 -0.7719 1.2108 6 6 4.0229 -1.4729 -0.0723 7 7 3.5093 -0.7422 -1.2378 8 6 4.0373 -1.3058 -2.4873 9 6 3.5011 -2.7018 -2.6747 10 1 2.8345 -3.1273 -1.9393 11 6 3.8616 -3.4356 -3.7848 12 7 3.3942 -4.6539 -3.9481 13 14 5.0087 -2.6966 -5.0607 14 1 4.2105 -1.9845 -6.0907 15 1 5.9321 -1.7389 -4.4006 16 1 5.7955 -3.7788 -5.7049 17 6 2.0410 -0.7235 -1.2479 18 1 1.6648 -1.7465 -1.2543 19 6 1.5565 -0.0029 -2.4798 20 8 2.2961 0.7482 -3.0704 21 8 0.3034 -0.1956 -2.9207 22 1 -0.3634 0.5123 0.8908 23 1 -0.3633 0.5153 -0.8891 24 1 -0.3634 -1.0277 -0.0018 25 1 3.1316 1.4407 -0.0017 26 1 1.6774 1.9567 -0.8891 27 1 1.6802 1.9557 0.8908 28 1 1.6451 -1.7391 1.2690 29 1 1.7156 -0.1880 2.1404 30 1 3.9394 -1.3234 2.0759 31 1 3.9683 0.2430 1.2302 32 1 3.6374 -2.4925 -0.0842 33 1 5.1121 -1.4962 -0.1092 34 1 5.1258 -1.3381 -2.4400 35 1 3.7284 -0.6823 -3.3263 36 1 3.6447 -5.1687 -4.7312 37 1 0.0381 0.2888 -3.7145 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232802378.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:58 Heat of formation + Delta-G solvation = -117.258086 kcal Electronic energy + Delta-G solvation = -19182.894259 eV Core-core repulsion = 16344.869646 eV Total energy + Delta-G solvation = -2838.024612 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.95736 -39.69109 -37.14979 -36.30382 -34.44269 -33.10693 -29.75481 -28.19550 -27.84342 -26.14309 -24.19630 -22.26718 -21.79718 -19.83020 -19.07944 -18.69686 -17.39798 -17.08165 -16.51120 -16.02395 -15.96223 -15.00800 -14.85076 -14.70411 -14.48380 -14.09963 -13.85894 -13.64057 -13.18403 -13.12406 -12.91181 -12.62906 -12.50394 -12.28102 -12.09542 -11.97482 -11.93084 -11.79956 -11.68428 -11.33417 -11.12100 -10.92987 -10.75831 -9.04763 -8.38600 -6.42744 1.26229 1.28748 1.33181 1.41027 2.13919 2.26460 2.96794 3.18738 3.69665 3.93947 3.97990 4.25381 4.31585 4.43597 4.51857 4.70536 4.71311 4.78494 4.87376 4.95311 5.01629 5.04957 5.06836 5.09721 5.17482 5.21658 5.29900 5.34777 5.43870 5.48380 5.67397 5.69222 6.00552 6.21579 6.32122 6.62161 7.12719 7.24490 8.76797 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026197 B = 0.009861 C = 0.008698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.547973 B = 2838.681810 C = 3218.383406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.052 4.052 3 C -0.129 4.129 4 C -0.103 4.103 5 C -0.112 4.112 6 C 0.060 3.940 7 N -0.511 5.511 8 C 0.149 3.851 9 C -0.550 4.550 10 H 0.043 0.957 11 C 0.021 3.979 12 N -0.938 5.938 13 Si 0.936 3.064 14 H -0.274 1.274 15 H -0.252 1.252 16 H -0.276 1.276 17 C 0.111 3.889 18 H 0.050 0.950 19 C 0.496 3.504 20 O -0.532 6.532 21 O -0.513 6.513 22 H 0.086 0.914 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.031 0.969 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.016 0.984 33 H 0.070 0.930 34 H 0.028 0.972 35 H 0.031 0.969 36 H 0.267 0.733 37 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.681 10.807 9.835 15.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.053 4.053 3 C -0.186 4.186 4 C -0.140 4.140 5 C -0.149 4.149 6 C -0.068 4.068 7 N -0.235 5.235 8 C 0.021 3.979 9 C -0.589 4.589 10 H 0.061 0.939 11 C -0.178 4.178 12 N -0.578 5.578 13 Si 0.760 3.240 14 H -0.200 1.200 15 H -0.176 1.176 16 H -0.202 1.202 17 C 0.001 3.999 18 H 0.068 0.932 19 C 0.339 3.661 20 O -0.421 6.421 21 O -0.325 6.325 22 H 0.105 0.895 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.035 0.965 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.076 0.924 37 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -4.193 11.138 9.945 15.510 hybrid contribution 0.084 -1.038 -1.954 2.215 sum -4.109 10.100 7.991 13.518 Atomic orbital electron populations 1.21936 0.92570 1.02359 1.03068 1.20651 0.96382 0.96239 0.92011 1.21785 1.02099 0.93440 1.01242 1.21645 0.95488 1.00156 0.96749 1.21684 0.95997 1.01745 0.95510 1.22064 0.99591 0.94908 0.90239 1.62205 1.04720 1.53167 1.03430 1.20238 0.95690 0.91997 0.89932 1.21859 1.29412 1.00102 1.07549 0.93902 1.25736 0.97259 0.94892 0.99938 1.70041 1.46310 1.11522 1.29909 0.85876 0.79972 0.78666 0.79509 1.20005 1.17572 1.20154 1.21178 0.90274 0.97532 0.90918 0.93237 1.23371 0.78955 0.78530 0.85229 1.90605 1.56262 1.37137 1.58097 1.84543 1.31289 1.68566 1.48148 0.89490 0.92571 0.92927 0.91947 0.94953 0.90099 0.92663 0.88172 0.89461 0.90158 0.96529 0.91162 0.95369 0.95125 0.92381 0.71999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.05 71.98 0.58 -2.87 16 2 C -0.05 -1.49 0.54 -52.13 -0.03 -1.52 16 3 C -0.13 -3.44 7.76 71.98 0.56 -2.88 16 4 C -0.10 -2.52 4.79 30.68 0.15 -2.38 16 5 C -0.11 -2.93 5.74 30.65 0.18 -2.76 16 6 C 0.06 2.21 5.13 86.33 0.44 2.65 16 7 N -0.51 -21.56 3.74 -880.06 -3.29 -24.85 16 8 C 0.15 7.52 3.67 85.56 0.31 7.84 16 9 C -0.55 -31.59 8.29 25.60 0.21 -31.37 16 10 H 0.04 2.68 6.08 -2.91 -0.02 2.66 16 11 C 0.02 1.23 5.47 84.65 0.46 1.69 16 12 N -0.94 -58.41 13.96 21.45 0.30 -58.11 16 13 Si 0.94 45.90 27.46 68.60 1.88 47.78 16 14 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 15 H -0.25 -11.84 6.55 99.48 0.65 -11.18 16 16 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 17 C 0.11 4.35 1.13 44.19 0.05 4.40 16 18 H 0.05 2.27 6.57 -2.39 -0.02 2.25 16 19 C 0.50 19.89 5.04 71.24 0.36 20.25 16 20 O -0.53 -23.84 14.98 21.94 0.33 -23.51 16 21 O -0.51 -16.95 11.74 -51.36 -0.60 -17.55 16 22 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.06 1.43 6.22 -2.39 -0.01 1.41 16 24 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.06 1.85 6.01 -2.38 -0.01 1.83 16 26 H 0.03 0.95 7.00 -2.39 -0.02 0.94 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.08 1.98 6.59 -2.38 -0.02 1.96 16 32 H 0.02 0.70 7.03 -2.38 -0.02 0.68 16 33 H 0.07 2.56 8.06 -2.39 -0.02 2.54 16 34 H 0.03 1.43 7.13 -2.39 -0.02 1.42 16 35 H 0.03 1.65 5.10 -2.39 -0.01 1.64 16 36 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.42 9.79 9.10 -74.05 -0.67 9.11 16 Total: -1.00 -70.72 280.32 2.24 -68.48 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.34 Total: 14.70 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 3.27 Total: -6.95 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -2.99 Total: -82.96 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -0.27 Total: -41.06 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.88 Total: 47.78 kcal Total: -70.72 2.24 -68.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232802378.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.774 kcal (2) G-P(sol) polarization free energy of solvation -70.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds