Wall clock time and date at job start Mon Mar 30 2020 03:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47218 * 2 1 4 4 C 1.53010 * 109.47041 * 185.74606 * 3 2 1 5 5 C 1.50700 * 110.06326 * 295.15655 * 4 3 2 6 6 O 1.20825 * 120.00360 * 24.74401 * 5 4 3 7 7 O 1.34229 * 119.99753 * 204.73908 * 5 4 3 8 8 C 1.53997 * 109.91247 * 56.36024 * 4 3 2 9 9 C 1.54596 * 105.13531 * 118.13086 * 8 4 3 10 10 C 1.54938 * 102.92498 * 338.03769 * 9 8 4 11 11 N 1.47898 * 109.91720 * 173.94879 * 4 3 2 12 12 C 1.46900 * 110.99744 * 26.49423 * 11 4 3 13 13 C 1.50703 * 109.46945 * 176.44330 * 12 11 4 14 14 H 1.07996 * 119.99906 * 354.94008 * 13 12 11 15 15 C 1.37880 * 119.99790 * 174.94061 * 13 12 11 16 16 N 1.31510 * 120.00404 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99876 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47120 * 180.02562 * 17 15 13 19 19 H 1.48502 * 109.47225 * 59.99474 * 17 15 13 20 20 H 1.48508 * 109.46952 * 299.99694 * 17 15 13 21 21 H 1.08998 * 109.47111 * 59.99777 * 1 2 3 22 22 H 1.08993 * 109.47367 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46807 * 300.00136 * 1 2 3 24 24 H 1.09003 * 109.46807 * 239.99864 * 2 1 3 25 25 H 1.08998 * 109.47111 * 120.00223 * 2 1 3 26 26 H 1.08994 * 109.47139 * 65.75074 * 3 2 1 27 27 H 1.08992 * 109.47328 * 305.74562 * 3 2 1 28 28 H 0.96699 * 116.99945 * 180.02562 * 7 5 4 29 29 H 1.08991 * 110.31160 * 359.21312 * 8 4 3 30 30 H 1.09001 * 110.38954 * 237.08023 * 8 4 3 31 31 H 1.09000 * 110.72042 * 219.68209 * 9 8 4 32 32 H 1.08998 * 110.87861 * 96.47412 * 9 8 4 33 33 H 1.09002 * 110.66924 * 278.98532 * 10 9 8 34 34 H 1.08998 * 110.66717 * 155.84986 * 10 9 8 35 35 H 1.09000 * 109.47713 * 56.44695 * 12 11 4 36 36 H 1.09001 * 109.47170 * 296.44002 * 12 11 4 37 37 H 0.96999 * 119.99800 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5633 1.4448 -0.1444 5 6 4.1979 0.8015 1.0615 6 8 3.5732 0.0038 1.7198 7 8 5.4574 1.1145 1.4043 8 6 3.9704 0.6842 -1.4201 9 6 4.6876 1.7313 -2.3028 10 6 4.1474 3.0757 -1.7539 11 7 4.0533 2.8325 -0.2917 12 6 3.1328 3.7858 0.3423 13 6 3.7067 5.1761 0.2488 14 1 4.6952 5.3259 -0.1595 15 6 2.9696 6.2569 0.6844 16 7 1.7657 6.0746 1.1812 17 14 3.6807 7.9804 0.5678 18 1 2.6975 8.9584 1.0987 19 1 3.9785 8.2980 -0.8520 20 1 4.9317 8.0547 1.3646 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.7632 1.9257 0.9369 27 1 1.5952 1.9851 -0.8340 28 1 5.8217 0.6759 2.1853 29 1 3.0868 0.3009 -1.9302 30 1 4.6492 -0.1326 -1.1749 31 1 4.4144 1.6047 -3.3504 32 1 5.7687 1.6699 -2.1775 33 1 3.1647 3.2947 -2.1716 34 1 4.8456 3.8857 -1.9650 35 1 2.9977 3.5184 1.3904 36 1 2.1699 3.7551 -0.1676 37 1 1.3963 5.1797 1.2414 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233329111.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:15 Heat of formation + Delta-G solvation = -96.015392 kcal Electronic energy + Delta-G solvation = -18704.549052 eV Core-core repulsion = 15867.445592 eV Total energy + Delta-G solvation = -2837.103460 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.60638 -38.30026 -35.86130 -34.04957 -33.43930 -31.10430 -29.73579 -25.95826 -25.60324 -23.47432 -22.46103 -21.43778 -20.48952 -19.11036 -17.56158 -16.75143 -16.37902 -15.42441 -15.03216 -14.39266 -14.08232 -13.79613 -13.69388 -13.50265 -12.97024 -12.49950 -12.40758 -12.07509 -11.58004 -11.50940 -11.37641 -11.13855 -10.94010 -10.86397 -10.74299 -10.64450 -10.41617 -10.35534 -10.26604 -10.07473 -9.57168 -8.68246 -8.41073 -7.56168 -6.39666 -4.08997 2.55869 3.43166 3.45769 3.46408 3.64206 4.45714 4.60428 4.81100 4.94159 5.10806 5.29224 5.36345 5.37887 5.42100 5.64830 5.72230 5.78142 5.90898 6.00238 6.01760 6.05734 6.15840 6.20898 6.33284 6.46791 6.49688 6.55732 6.58134 6.83293 6.97342 7.00448 7.52114 7.79383 8.19713 8.36767 8.53919 8.82934 9.61756 10.99542 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.023333 B = 0.007991 C = 0.007410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.728643 B = 3503.249636 C = 3777.804794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C -0.120 4.120 4 C 0.097 3.903 5 C 0.507 3.493 6 O -0.528 6.528 7 O -0.491 6.491 8 C -0.114 4.114 9 C -0.125 4.125 10 C 0.054 3.946 11 N -0.488 5.488 12 C 0.172 3.828 13 C -0.589 4.589 14 H 0.058 0.942 15 C 0.015 3.985 16 N -0.912 5.912 17 Si 1.072 2.928 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.287 1.287 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.395 0.605 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.016 0.984 36 H -0.004 1.004 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.214 -11.105 -5.176 12.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C -0.158 4.158 4 C 0.005 3.995 5 C 0.349 3.651 6 O -0.417 6.417 7 O -0.299 6.299 8 C -0.152 4.152 9 C -0.163 4.163 10 C -0.074 4.074 11 N -0.212 5.212 12 C 0.047 3.953 13 C -0.628 4.628 14 H 0.076 0.924 15 C -0.189 4.189 16 N -0.549 5.549 17 Si 0.900 3.100 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.214 1.214 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.110 0.890 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.252 0.748 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.034 0.966 36 H 0.014 0.986 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.071 -9.429 -4.765 11.002 hybrid contribution -0.271 -1.953 -0.011 1.972 sum 2.799 -11.381 -4.777 12.657 Atomic orbital electron populations 1.21745 0.96287 1.00923 1.01647 1.21931 0.95512 0.96690 1.03547 1.22038 0.92501 0.97807 1.03478 1.21604 0.93314 0.93612 0.90959 1.23453 0.79081 0.77933 0.84585 1.90572 1.63281 1.34814 1.53077 1.84734 1.30096 1.66503 1.48543 1.22474 1.00829 0.98027 0.93882 1.22567 1.00644 0.94950 0.98184 1.23014 0.99988 0.96534 0.87841 1.64882 1.47060 0.98175 1.11096 1.20074 0.90159 0.91584 0.93525 1.21926 1.04207 0.90968 1.45672 0.92397 1.25857 0.94972 1.04410 0.93641 1.70803 1.16029 1.25496 1.42531 0.83490 0.75318 0.74769 0.76383 1.20845 1.21431 1.21357 0.93219 0.93154 0.92801 0.92498 0.88988 0.90774 0.90732 0.74817 0.90069 0.91418 0.91250 0.90789 0.94036 0.89579 0.96622 0.98645 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.14 -2.12 5.35 -26.73 -0.14 -2.27 16 3 C -0.12 -2.15 2.71 -26.73 -0.07 -2.23 16 4 C 0.10 1.76 0.60 -131.68 -0.08 1.69 16 5 C 0.51 9.31 6.94 36.01 0.25 9.56 16 6 O -0.53 -10.11 14.40 -18.75 -0.27 -10.38 16 7 O -0.49 -8.19 13.14 -39.26 -0.52 -8.70 16 8 C -0.11 -1.67 5.59 -25.37 -0.14 -1.81 16 9 C -0.13 -1.80 7.06 -24.87 -0.18 -1.98 16 10 C 0.05 1.01 5.92 -1.90 -0.01 0.99 16 11 N -0.49 -10.40 4.66 -217.73 -1.01 -11.42 16 12 C 0.17 4.39 2.76 -4.97 -0.01 4.37 16 13 C -0.59 -16.56 8.68 -34.44 -0.30 -16.86 16 14 H 0.06 1.63 7.52 -52.49 -0.39 1.23 16 15 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16 16 N -0.91 -27.64 13.65 55.43 0.76 -26.88 16 17 Si 1.07 25.20 29.90 -169.99 -5.08 20.12 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.78 6.07 -51.93 -0.32 0.46 16 25 H 0.09 1.55 5.50 -51.93 -0.29 1.26 16 26 H 0.07 1.52 6.86 -51.93 -0.36 1.17 16 27 H 0.07 1.36 7.40 -51.93 -0.38 0.97 16 28 H 0.40 4.52 9.10 45.56 0.41 4.94 16 29 H 0.08 1.07 6.07 -51.93 -0.32 0.75 16 30 H 0.07 0.92 7.68 -51.93 -0.40 0.52 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.04 0.80 7.91 -51.93 -0.41 0.38 16 34 H 0.09 1.67 7.84 -51.93 -0.41 1.26 16 35 H 0.02 0.44 7.58 -51.93 -0.39 0.05 16 36 H 0.00 -0.11 6.03 -51.93 -0.31 -0.42 16 37 H 0.27 8.05 7.19 -40.82 -0.29 7.76 16 LS Contribution 291.54 15.07 4.39 4.39 Total: -1.00 -32.10 291.54 -6.91 -39.01 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -4.76 Total: 3.71 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -0.41 Total: -9.85 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: -0.26 Total: -38.30 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.79 Total: -19.08 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.08 Total: 20.12 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.10 -6.91 -39.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233329111.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.003 kcal (2) G-P(sol) polarization free energy of solvation -32.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds