Wall clock time and date at job start Mon Mar 30 2020 03:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47218 * 2 1 4 4 C 1.53010 * 109.47041 * 185.74606 * 3 2 1 5 5 C 1.50700 * 110.06326 * 295.15655 * 4 3 2 6 6 O 1.20825 * 120.00360 * 24.74401 * 5 4 3 7 7 O 1.34229 * 119.99753 * 204.73908 * 5 4 3 8 8 C 1.53997 * 109.91247 * 56.36024 * 4 3 2 9 9 C 1.54596 * 105.13531 * 118.13086 * 8 4 3 10 10 C 1.54938 * 102.92498 * 338.03769 * 9 8 4 11 11 N 1.47898 * 109.91720 * 173.94879 * 4 3 2 12 12 C 1.46900 * 110.99744 * 26.49423 * 11 4 3 13 13 C 1.50703 * 109.46945 * 176.44330 * 12 11 4 14 14 H 1.07996 * 119.99906 * 354.94008 * 13 12 11 15 15 C 1.37880 * 119.99790 * 174.94061 * 13 12 11 16 16 N 1.31510 * 120.00404 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99876 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47120 * 180.02562 * 17 15 13 19 19 H 1.48502 * 109.47225 * 59.99474 * 17 15 13 20 20 H 1.48508 * 109.46952 * 299.99694 * 17 15 13 21 21 H 1.08998 * 109.47111 * 59.99777 * 1 2 3 22 22 H 1.08993 * 109.47367 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46807 * 300.00136 * 1 2 3 24 24 H 1.09003 * 109.46807 * 239.99864 * 2 1 3 25 25 H 1.08998 * 109.47111 * 120.00223 * 2 1 3 26 26 H 1.08994 * 109.47139 * 65.75074 * 3 2 1 27 27 H 1.08992 * 109.47328 * 305.74562 * 3 2 1 28 28 H 0.96699 * 116.99945 * 180.02562 * 7 5 4 29 29 H 1.08991 * 110.31160 * 359.21312 * 8 4 3 30 30 H 1.09001 * 110.38954 * 237.08023 * 8 4 3 31 31 H 1.09000 * 110.72042 * 219.68209 * 9 8 4 32 32 H 1.08998 * 110.87861 * 96.47412 * 9 8 4 33 33 H 1.09002 * 110.66924 * 278.98532 * 10 9 8 34 34 H 1.08998 * 110.66717 * 155.84986 * 10 9 8 35 35 H 1.09000 * 109.47713 * 56.44695 * 12 11 4 36 36 H 1.09001 * 109.47170 * 296.44002 * 12 11 4 37 37 H 0.96999 * 119.99800 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5633 1.4448 -0.1444 5 6 4.1979 0.8015 1.0615 6 8 3.5732 0.0038 1.7198 7 8 5.4574 1.1145 1.4043 8 6 3.9704 0.6842 -1.4201 9 6 4.6876 1.7313 -2.3028 10 6 4.1474 3.0757 -1.7539 11 7 4.0533 2.8325 -0.2917 12 6 3.1328 3.7858 0.3423 13 6 3.7067 5.1761 0.2488 14 1 4.6952 5.3259 -0.1595 15 6 2.9696 6.2569 0.6844 16 7 1.7657 6.0746 1.1812 17 14 3.6807 7.9804 0.5678 18 1 2.6975 8.9584 1.0987 19 1 3.9785 8.2980 -0.8520 20 1 4.9317 8.0547 1.3646 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.7632 1.9257 0.9369 27 1 1.5952 1.9851 -0.8340 28 1 5.8217 0.6759 2.1853 29 1 3.0868 0.3009 -1.9302 30 1 4.6492 -0.1326 -1.1749 31 1 4.4144 1.6047 -3.3504 32 1 5.7687 1.6699 -2.1775 33 1 3.1647 3.2947 -2.1716 34 1 4.8456 3.8857 -1.9650 35 1 2.9977 3.5184 1.3904 36 1 2.1699 3.7551 -0.1676 37 1 1.3963 5.1797 1.2414 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233329111.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:15 Heat of formation + Delta-G solvation = -118.728212 kcal Electronic energy + Delta-G solvation = -18705.533953 eV Core-core repulsion = 15867.445592 eV Total energy + Delta-G solvation = -2838.088362 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.05144 -39.77750 -37.26460 -35.71853 -35.13420 -32.78363 -31.10072 -27.90847 -26.95927 -25.19904 -24.08832 -22.80990 -21.91153 -20.56510 -19.04535 -18.79115 -17.83246 -16.87830 -16.48583 -15.81860 -15.66232 -15.48077 -15.29563 -14.94470 -14.55651 -14.13818 -13.81240 -13.46554 -13.23608 -13.08947 -12.82078 -12.62679 -12.52543 -12.37038 -12.12936 -12.03644 -12.01814 -11.93410 -11.69665 -11.58487 -10.97851 -10.74778 -10.59577 -9.29559 -8.70408 -6.41115 1.11622 1.52625 1.61100 1.80566 2.14567 2.54321 3.02792 3.12972 3.45441 3.59092 3.81876 4.04509 4.11534 4.20869 4.34644 4.43308 4.47813 4.65190 4.70769 4.72090 4.75550 4.80438 4.92890 4.94341 5.05720 5.08532 5.14908 5.25367 5.27645 5.35074 5.63109 5.72250 5.91006 6.16675 6.34256 6.54767 7.05591 7.39716 8.68534 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.023333 B = 0.007991 C = 0.007410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.728643 B = 3503.249636 C = 3777.804794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C -0.113 4.113 4 C 0.088 3.912 5 C 0.503 3.497 6 O -0.541 6.541 7 O -0.496 6.496 8 C -0.108 4.108 9 C -0.109 4.109 10 C 0.047 3.953 11 N -0.501 5.501 12 C 0.193 3.807 13 C -0.600 4.600 14 H 0.056 0.944 15 C -0.036 4.036 16 N -0.936 5.936 17 Si 1.120 2.880 18 H -0.285 1.285 19 H -0.265 1.265 20 H -0.272 1.272 21 H 0.055 0.945 22 H 0.074 0.926 23 H 0.037 0.963 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.033 0.967 27 H 0.067 0.933 28 H 0.417 0.583 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.031 0.969 34 H 0.074 0.926 35 H -0.020 1.020 36 H -0.021 1.021 37 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.393 -12.057 -6.861 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C -0.152 4.152 4 C -0.004 4.004 5 C 0.347 3.653 6 O -0.431 6.431 7 O -0.306 6.306 8 C -0.146 4.146 9 C -0.147 4.147 10 C -0.080 4.080 11 N -0.225 5.225 12 C 0.066 3.934 13 C -0.638 4.638 14 H 0.074 0.926 15 C -0.234 4.234 16 N -0.574 5.574 17 Si 0.941 3.059 18 H -0.210 1.210 19 H -0.190 1.190 20 H -0.197 1.197 21 H 0.074 0.926 22 H 0.093 0.907 23 H 0.056 0.944 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.277 0.723 29 H 0.120 0.880 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.049 0.951 34 H 0.092 0.908 35 H -0.002 1.002 36 H -0.003 1.003 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.278 -10.419 -6.453 12.981 hybrid contribution -0.605 -1.700 0.557 1.889 sum 3.674 -12.119 -5.895 13.969 Atomic orbital electron populations 1.21744 0.95144 1.02358 1.01243 1.21854 0.96513 0.94389 1.04002 1.21940 0.92886 0.99414 1.00978 1.21816 0.93238 0.92198 0.93104 1.23480 0.79482 0.77780 0.84583 1.90572 1.63646 1.35537 1.53383 1.84671 1.29355 1.66750 1.49868 1.22545 1.02187 0.98063 0.91810 1.22532 1.00915 0.91498 0.99757 1.23089 0.99495 0.99106 0.86347 1.64718 1.45928 0.99110 1.12774 1.19636 0.90180 0.91888 0.91719 1.22268 1.04089 0.92406 1.45043 0.92605 1.27420 0.94592 1.08728 0.92626 1.70934 1.17344 1.24589 1.44510 0.82896 0.75064 0.70077 0.77856 1.21009 1.18995 1.19726 0.92562 0.90746 0.94355 0.89907 0.90436 0.94824 0.91418 0.72284 0.87993 0.89539 0.87779 0.89921 0.95056 0.90755 1.00177 1.00340 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 9.91 71.98 0.71 -3.16 16 2 C -0.13 -3.82 5.35 30.59 0.16 -3.66 16 3 C -0.11 -4.16 2.71 30.60 0.08 -4.08 16 4 C 0.09 3.16 0.60 2.93 0.00 3.16 16 5 C 0.50 18.24 6.94 71.24 0.49 18.74 16 6 O -0.54 -20.56 14.40 21.97 0.32 -20.24 16 7 O -0.50 -16.04 13.14 -51.41 -0.68 -16.72 16 8 C -0.11 -2.83 5.59 31.47 0.18 -2.65 16 9 C -0.11 -2.78 7.06 31.80 0.22 -2.56 16 10 C 0.05 1.72 5.92 86.65 0.51 2.23 16 11 N -0.50 -21.55 4.66 -842.77 -3.93 -25.48 16 12 C 0.19 10.24 2.76 85.56 0.24 10.47 16 13 C -0.60 -34.47 8.68 25.60 0.22 -34.25 16 14 H 0.06 3.17 7.52 -2.91 -0.02 3.15 16 15 C -0.04 -2.11 5.46 84.66 0.46 -1.65 16 16 N -0.94 -58.48 13.65 21.45 0.29 -58.19 16 17 Si 1.12 50.54 29.90 68.60 2.05 52.59 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 21 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 23 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.08 2.01 6.07 -2.39 -0.01 1.99 16 25 H 0.08 2.56 5.50 -2.39 -0.01 2.54 16 26 H 0.03 1.47 6.86 -2.39 -0.02 1.45 16 27 H 0.07 2.52 7.40 -2.39 -0.02 2.51 16 28 H 0.42 9.03 9.10 -74.06 -0.67 8.35 16 29 H 0.10 2.26 6.07 -2.39 -0.01 2.24 16 30 H 0.09 1.99 7.68 -2.39 -0.02 1.97 16 31 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.03 1.19 7.91 -2.39 -0.02 1.17 16 34 H 0.07 2.85 7.84 -2.39 -0.02 2.83 16 35 H -0.02 -1.17 7.58 -2.39 -0.02 -1.19 16 36 H -0.02 -1.16 6.03 -2.39 -0.01 -1.18 16 37 H 0.25 16.04 7.19 -92.71 -0.67 15.38 16 Total: -1.00 -71.25 291.54 1.84 -69.41 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.50 Total: 16.02 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 3.29 Total: -17.41 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -3.64 Total: -83.66 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -0.36 Total: -36.96 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 2.05 Total: 52.59 kcal Total: -71.25 1.84 -69.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233329111.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.317 kcal (2) G-P(sol) polarization free energy of solvation -71.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds