Wall clock time and date at job start Mon Mar 30 2020 03:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.63108 * 2 1 4 4 C 1.53008 * 109.46634 * 306.05745 * 3 2 1 5 5 H 1.09000 * 110.63324 * 56.65141 * 4 3 2 6 6 C 1.55148 * 110.70444 * 179.97438 * 4 3 2 7 7 C 1.54905 * 101.64940 * 154.03246 * 6 4 3 8 8 N 1.47844 * 104.79783 * 322.92870 * 7 6 4 9 9 C 1.47441 * 108.56788 * 24.09784 * 8 7 6 10 10 O 1.43746 * 109.63473 * 239.60168 * 2 1 3 11 11 C 1.44790 * 104.81676 * 264.58484 * 10 2 1 12 12 C 1.54910 * 101.71919 * 323.89790 * 11 10 2 13 13 H 1.08998 * 110.69802 * 276.98620 * 12 11 10 14 14 C 1.50706 * 110.69751 * 153.95629 * 12 11 10 15 15 H 1.08005 * 119.99758 * 2.37515 * 14 12 11 16 16 C 1.37871 * 120.00102 * 182.37399 * 14 12 11 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 O 1.43647 * 109.60919 * 120.20950 * 2 1 3 23 23 H 1.08998 * 109.47475 * 179.69282 * 1 2 3 24 24 H 1.09000 * 109.47642 * 299.70076 * 1 2 3 25 25 H 1.09004 * 109.46701 * 59.69787 * 1 2 3 26 26 H 1.08993 * 109.47604 * 66.05276 * 3 2 1 27 27 H 1.08996 * 109.47310 * 186.06111 * 3 2 1 28 28 H 1.08993 * 110.98885 * 272.12794 * 6 4 3 29 29 H 1.09001 * 110.98932 * 35.94289 * 6 4 3 30 30 H 1.08999 * 110.37316 * 204.09901 * 7 6 4 31 31 H 1.09003 * 110.46406 * 81.81036 * 7 6 4 32 32 H 1.00908 * 110.99383 * 146.36489 * 8 7 6 33 33 H 1.08995 * 109.88950 * 239.59825 * 9 8 7 34 34 H 1.09005 * 110.02306 * 118.49174 * 9 8 7 35 35 H 1.08998 * 110.98370 * 205.78455 * 11 10 2 36 36 H 1.09007 * 111.00777 * 82.01353 * 11 10 2 37 37 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 6 1.4155 2.2066 -1.1663 5 1 0.3277 2.1692 -1.1085 6 6 1.9176 3.6744 -1.1930 7 6 1.7590 4.0319 -2.6918 8 7 2.1213 2.7947 -3.4156 9 6 1.9094 1.6456 -2.5164 10 8 2.0130 -0.6851 -1.1678 11 6 2.2618 -2.0410 -0.7251 12 6 2.7837 -1.8111 0.7152 13 1 3.8472 -1.5727 0.7061 14 6 2.5178 -3.0184 1.5771 15 1 2.0580 -3.8969 1.1489 16 6 2.8614 -3.0014 2.9122 17 7 3.4207 -1.9315 3.4338 18 14 2.5311 -4.4977 3.9807 19 1 2.9900 -4.2271 5.3669 20 1 1.0749 -4.7886 3.9887 21 1 3.2666 -5.6671 3.4358 22 8 2.0120 -0.6809 1.1694 23 1 -0.3634 -1.0276 -0.0055 24 1 -0.3634 0.5092 0.8926 25 1 -0.3633 0.5186 -0.8873 26 1 1.7732 1.9235 0.9391 27 1 3.1285 1.4400 -0.1085 28 1 1.2906 4.3128 -0.5707 29 1 2.9614 3.7356 -0.8852 30 1 2.4363 4.8420 -2.9624 31 1 0.7282 4.3113 -2.9100 32 1 1.5781 2.6978 -4.2604 33 1 2.8470 1.1083 -2.3740 34 1 1.1588 0.9762 -2.9367 35 1 3.0208 -2.5203 -1.3434 36 1 1.3414 -2.6249 -0.7181 37 1 3.5919 -1.1544 2.8790 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258018191.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:27 Heat of formation + Delta-G solvation = -102.679428 kcal Electronic energy + Delta-G solvation = -18499.730980 eV Core-core repulsion = 15662.338546 eV Total energy + Delta-G solvation = -2837.392434 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.80124 -38.22388 -34.21023 -33.47974 -32.25758 -29.88547 -28.70648 -27.86932 -25.56905 -24.27623 -21.57755 -21.28010 -20.83306 -19.34519 -17.22615 -16.77592 -16.27711 -15.33587 -14.86942 -14.47842 -14.02641 -13.78453 -13.51527 -13.23610 -12.88162 -12.45766 -12.26508 -12.12341 -11.89479 -11.64365 -11.47437 -11.29124 -11.19878 -10.99343 -10.79586 -10.62811 -10.42176 -10.37001 -10.10543 -9.16194 -9.03702 -8.57811 -8.36655 -8.19417 -6.47240 -4.27238 3.39451 3.41562 3.60320 4.26547 4.36889 4.49083 4.61444 4.77753 4.93959 5.08060 5.29539 5.40885 5.48127 5.55554 5.66021 5.70376 5.74577 5.87043 5.94381 5.97177 6.00147 6.05461 6.17256 6.21145 6.33524 6.43079 6.44908 6.52934 6.66336 6.75285 6.93839 7.20197 7.39464 7.94944 8.18044 8.39706 8.74599 9.56045 10.94443 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.050930 B = 0.005865 C = 0.005661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.643731 B = 4772.666612 C = 4945.106832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.249 3.751 3 C -0.107 4.107 4 C -0.106 4.106 5 H 0.076 0.924 6 C -0.127 4.127 7 C 0.045 3.955 8 N -0.689 5.689 9 C 0.059 3.941 10 O -0.388 6.388 11 C 0.028 3.972 12 C 0.168 3.832 13 H 0.034 0.966 14 C -0.614 4.614 15 H 0.058 0.942 16 C 0.034 3.966 17 N -0.886 5.886 18 Si 1.071 2.929 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.286 1.286 22 O -0.377 6.377 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.333 0.667 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.796 8.003 -9.597 13.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.171 3.829 3 C -0.145 4.145 4 C -0.125 4.125 5 H 0.094 0.906 6 C -0.165 4.165 7 C -0.084 4.084 8 N -0.318 5.318 9 C -0.070 4.070 10 O -0.309 6.309 11 C -0.048 4.048 12 C 0.114 3.886 13 H 0.051 0.949 14 C -0.651 4.651 15 H 0.077 0.923 16 C -0.175 4.175 17 N -0.520 5.520 18 Si 0.898 3.102 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.212 1.212 22 O -0.299 6.299 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.148 0.852 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.936 7.629 -7.954 11.703 hybrid contribution -1.280 0.382 -1.608 2.090 sum -5.216 8.011 -9.562 13.521 Atomic orbital electron populations 1.22360 0.95870 1.02602 1.01469 1.23083 0.91852 0.90521 0.77419 1.21830 1.01090 0.93677 0.97888 1.22431 1.00016 0.94424 0.95661 0.90568 1.22779 1.02118 0.95910 0.95672 1.22799 0.98523 0.93431 0.93612 1.61940 1.59937 1.02282 1.07666 1.22669 1.01736 0.91783 0.90773 1.89082 1.86171 1.22842 1.32793 1.24354 1.00147 0.83356 0.96956 1.21427 0.91674 0.85346 0.90203 0.94862 1.21876 1.47573 0.98199 0.97469 0.92336 1.25909 0.92822 1.02393 0.96351 1.70686 1.36835 1.04604 1.39842 0.83529 0.76426 0.74085 0.76117 1.20580 1.21270 1.21222 1.89236 1.70395 1.43115 1.27124 0.92157 0.91659 0.92117 0.90457 0.91014 0.91074 0.90569 0.90779 0.94375 0.85197 0.89543 0.93027 0.89480 0.92000 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 8.71 37.16 0.32 -2.63 16 2 C 0.25 5.03 1.14 -26.73 -0.03 5.00 16 3 C -0.11 -1.85 4.42 -26.73 -0.12 -1.97 16 4 C -0.11 -1.51 2.53 -88.79 -0.22 -1.73 16 5 H 0.08 1.04 6.22 -51.93 -0.32 0.72 16 6 C -0.13 -1.55 6.52 -24.59 -0.16 -1.71 16 7 C 0.05 0.51 7.57 -2.30 -0.02 0.49 16 8 N -0.69 -8.84 7.39 -110.79 -0.82 -9.66 16 9 C 0.06 0.86 5.66 -2.84 -0.02 0.85 16 10 O -0.39 -7.80 8.38 -59.01 -0.49 -8.29 16 11 C 0.03 0.60 7.33 38.17 0.28 0.88 16 12 C 0.17 4.33 3.00 -26.87 -0.08 4.25 16 13 H 0.03 0.92 8.00 -51.93 -0.42 0.50 16 14 C -0.61 -17.20 8.82 -34.44 -0.30 -17.51 16 15 H 0.06 1.59 7.77 -52.48 -0.41 1.18 16 16 C 0.03 0.98 5.43 -17.82 -0.10 0.88 16 17 N -0.89 -26.95 13.59 55.43 0.75 -26.20 16 18 Si 1.07 24.77 29.90 -169.99 -5.08 19.69 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 22 O -0.38 -9.60 9.64 -59.01 -0.57 -10.17 16 23 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.06 0.92 6.26 -51.93 -0.33 0.60 16 26 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.07 1.32 8.06 -51.93 -0.42 0.90 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.98 8.05 -51.93 -0.42 0.56 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.33 3.63 8.91 -39.29 -0.35 3.28 16 33 H 0.09 1.48 6.87 -51.93 -0.36 1.13 16 34 H 0.05 0.76 8.03 -51.93 -0.42 0.34 16 35 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 36 H 0.06 1.32 8.03 -51.93 -0.42 0.90 16 37 H 0.28 8.61 6.67 -40.82 -0.27 8.34 16 LS Contribution 291.22 15.07 4.39 4.39 Total: -1.00 -30.50 291.22 -8.14 -38.64 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.88 Total: 4.79 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -0.44 Total: -13.19 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.07 Total: -35.85 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -1.06 Total: -18.46 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.69 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.50 -8.14 -38.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258018191.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.039 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds