Wall clock time and date at job start Mon Mar 30 2020 03:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.63108 * 2 1 4 4 C 1.53008 * 109.46634 * 306.05745 * 3 2 1 5 5 H 1.09000 * 110.63324 * 56.65141 * 4 3 2 6 6 C 1.55148 * 110.70444 * 179.97438 * 4 3 2 7 7 C 1.54905 * 101.64940 * 154.03246 * 6 4 3 8 8 N 1.47844 * 104.79783 * 322.92870 * 7 6 4 9 9 C 1.47441 * 108.56788 * 24.09784 * 8 7 6 10 10 O 1.43746 * 109.63473 * 239.60168 * 2 1 3 11 11 C 1.44790 * 104.81676 * 264.58484 * 10 2 1 12 12 C 1.54910 * 101.71919 * 323.89790 * 11 10 2 13 13 H 1.08998 * 110.69802 * 276.98620 * 12 11 10 14 14 C 1.50706 * 110.69751 * 153.95629 * 12 11 10 15 15 H 1.08005 * 119.99758 * 2.37515 * 14 12 11 16 16 C 1.37871 * 120.00102 * 182.37399 * 14 12 11 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 O 1.43647 * 109.60919 * 120.20950 * 2 1 3 23 23 H 1.08998 * 109.47475 * 179.69282 * 1 2 3 24 24 H 1.09000 * 109.47642 * 299.70076 * 1 2 3 25 25 H 1.09004 * 109.46701 * 59.69787 * 1 2 3 26 26 H 1.08993 * 109.47604 * 66.05276 * 3 2 1 27 27 H 1.08996 * 109.47310 * 186.06111 * 3 2 1 28 28 H 1.08993 * 110.98885 * 272.12794 * 6 4 3 29 29 H 1.09001 * 110.98932 * 35.94289 * 6 4 3 30 30 H 1.08999 * 110.37316 * 204.09901 * 7 6 4 31 31 H 1.09003 * 110.46406 * 81.81036 * 7 6 4 32 32 H 1.00908 * 110.99383 * 146.36489 * 8 7 6 33 33 H 1.08995 * 109.88950 * 239.59825 * 9 8 7 34 34 H 1.09005 * 110.02306 * 118.49174 * 9 8 7 35 35 H 1.08998 * 110.98370 * 205.78455 * 11 10 2 36 36 H 1.09007 * 111.00777 * 82.01353 * 11 10 2 37 37 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 6 1.4155 2.2066 -1.1663 5 1 0.3277 2.1692 -1.1085 6 6 1.9176 3.6744 -1.1930 7 6 1.7590 4.0319 -2.6918 8 7 2.1213 2.7947 -3.4156 9 6 1.9094 1.6456 -2.5164 10 8 2.0130 -0.6851 -1.1678 11 6 2.2618 -2.0410 -0.7251 12 6 2.7837 -1.8111 0.7152 13 1 3.8472 -1.5727 0.7061 14 6 2.5178 -3.0184 1.5771 15 1 2.0580 -3.8969 1.1489 16 6 2.8614 -3.0014 2.9122 17 7 3.4207 -1.9315 3.4338 18 14 2.5311 -4.4977 3.9807 19 1 2.9900 -4.2271 5.3669 20 1 1.0749 -4.7886 3.9887 21 1 3.2666 -5.6671 3.4358 22 8 2.0120 -0.6809 1.1694 23 1 -0.3634 -1.0276 -0.0055 24 1 -0.3634 0.5092 0.8926 25 1 -0.3633 0.5186 -0.8873 26 1 1.7732 1.9235 0.9391 27 1 3.1285 1.4400 -0.1085 28 1 1.2906 4.3128 -0.5707 29 1 2.9614 3.7356 -0.8852 30 1 2.4363 4.8420 -2.9624 31 1 0.7282 4.3113 -2.9100 32 1 1.5781 2.6978 -4.2604 33 1 2.8470 1.1083 -2.3740 34 1 1.1588 0.9762 -2.9367 35 1 3.0208 -2.5203 -1.3434 36 1 1.3414 -2.6249 -0.7181 37 1 3.5919 -1.1544 2.8790 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258018191.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:26 Heat of formation + Delta-G solvation = -124.158103 kcal Electronic energy + Delta-G solvation = -18500.662365 eV Core-core repulsion = 15662.338546 eV Total energy + Delta-G solvation = -2838.323820 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.45042 -39.42167 -36.09352 -35.12533 -34.06919 -31.22143 -29.99597 -29.52822 -26.93181 -26.27918 -23.46045 -22.57211 -22.00683 -20.72449 -19.30410 -18.03475 -17.81181 -16.94144 -16.22691 -16.00819 -15.76889 -15.59521 -15.11603 -14.44296 -14.39260 -13.87178 -13.79958 -13.62402 -13.38911 -13.19487 -12.93810 -12.73476 -12.61690 -12.55298 -12.50412 -11.98674 -11.92884 -11.74367 -11.55274 -11.04319 -10.84094 -10.67063 -10.13086 -9.36117 -8.73411 -6.53975 1.53138 1.61302 1.80782 2.52093 2.68582 3.00671 3.28865 3.39730 3.61025 3.74573 3.89590 4.03002 4.07833 4.19126 4.25220 4.40566 4.40899 4.46989 4.51744 4.58403 4.69760 4.74280 4.79898 4.91972 4.95632 5.05909 5.11646 5.18137 5.21495 5.22918 5.40755 5.83605 5.92204 6.01754 6.43390 6.50141 6.54496 7.39401 8.67374 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.050930 B = 0.005865 C = 0.005661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.643731 B = 4772.666612 C = 4945.106832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.236 3.764 3 C -0.100 4.100 4 C -0.100 4.100 5 H 0.091 0.909 6 C -0.125 4.125 7 C 0.048 3.952 8 N -0.698 5.698 9 C 0.065 3.935 10 O -0.380 6.380 11 C 0.039 3.961 12 C 0.160 3.840 13 H 0.003 0.997 14 C -0.628 4.628 15 H 0.064 0.936 16 C -0.018 4.018 17 N -0.915 5.915 18 Si 1.121 2.879 19 H -0.284 1.284 20 H -0.270 1.270 21 H -0.263 1.263 22 O -0.407 6.407 23 H 0.047 0.953 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.346 0.654 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.107 0.893 36 H 0.067 0.933 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.386 8.328 -10.646 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.159 3.841 3 C -0.138 4.138 4 C -0.119 4.119 5 H 0.109 0.891 6 C -0.163 4.163 7 C -0.081 4.081 8 N -0.329 5.329 9 C -0.064 4.064 10 O -0.301 6.301 11 C -0.038 4.038 12 C 0.105 3.895 13 H 0.020 0.980 14 C -0.665 4.665 15 H 0.083 0.917 16 C -0.220 4.220 17 N -0.551 5.551 18 Si 0.941 3.059 19 H -0.209 1.209 20 H -0.195 1.195 21 H -0.188 1.188 22 O -0.330 6.330 23 H 0.066 0.934 24 H 0.088 0.912 25 H 0.110 0.890 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.162 0.838 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.125 0.875 36 H 0.085 0.915 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.534 7.969 -9.047 13.266 hybrid contribution -0.769 0.353 -1.359 1.601 sum -6.303 8.322 -10.406 14.740 Atomic orbital electron populations 1.22319 0.93632 1.02411 1.03240 1.23563 0.93492 0.91245 0.75832 1.21768 1.00019 0.92486 0.99576 1.22386 1.00475 0.95271 0.93782 0.89075 1.22793 1.01746 0.94681 0.97090 1.22860 1.00089 0.92799 0.92315 1.61856 1.60777 1.02221 1.08029 1.22460 1.00056 0.92429 0.91474 1.89094 1.86293 1.22177 1.32492 1.24225 1.00711 0.84159 0.94658 1.21301 0.90417 0.85165 0.92606 0.97979 1.22271 1.46927 0.99286 0.97993 0.91733 1.27496 0.91825 1.04298 0.98385 1.70823 1.39408 1.05071 1.39750 0.82915 0.77436 0.71357 0.74209 1.20934 1.19513 1.18774 1.89151 1.70475 1.43444 1.29895 0.93359 0.91171 0.88983 0.90451 0.93079 0.89028 0.91812 0.89762 0.92238 0.83771 0.92719 0.92962 0.87478 0.91455 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.42 8.71 71.98 0.63 -4.79 16 2 C 0.24 9.51 1.14 30.59 0.03 9.54 16 3 C -0.10 -3.48 4.42 30.60 0.14 -3.35 16 4 C -0.10 -2.66 2.53 -9.61 -0.02 -2.68 16 5 H 0.09 2.19 6.22 -2.39 -0.01 2.17 16 6 C -0.13 -2.78 6.52 31.98 0.21 -2.57 16 7 C 0.05 0.93 7.57 86.77 0.66 1.59 16 8 N -0.70 -16.38 7.39 -504.44 -3.73 -20.11 16 9 C 0.06 1.81 5.66 86.65 0.49 2.30 16 10 O -0.38 -15.16 8.38 -126.24 -1.06 -16.22 16 11 C 0.04 1.66 7.33 72.63 0.53 2.19 16 12 C 0.16 8.49 3.00 30.50 0.09 8.58 16 13 H 0.00 0.15 8.00 -2.39 -0.02 0.13 16 14 C -0.63 -35.60 8.82 25.60 0.23 -35.37 16 15 H 0.06 3.49 7.77 -2.91 -0.02 3.46 16 16 C -0.02 -1.06 5.43 84.65 0.46 -0.60 16 17 N -0.92 -57.34 13.59 21.45 0.29 -57.05 16 18 Si 1.12 49.58 29.90 68.60 2.05 51.63 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 21 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 22 O -0.41 -21.31 9.64 -126.24 -1.22 -22.53 16 23 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.09 2.54 6.26 -2.38 -0.01 2.52 16 26 H 0.08 2.65 8.14 -2.39 -0.02 2.64 16 27 H 0.05 1.95 8.06 -2.39 -0.02 1.93 16 28 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 1.57 8.05 -2.39 -0.02 1.55 16 30 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 32 H 0.35 6.63 8.91 -89.69 -0.80 5.83 16 33 H 0.05 1.88 6.87 -2.39 -0.02 1.86 16 34 H 0.05 1.43 8.03 -2.38 -0.02 1.41 16 35 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 36 H 0.07 2.81 8.03 -2.38 -0.02 2.79 16 37 H 0.26 16.93 6.67 -92.71 -0.62 16.31 16 Total: -1.00 -67.07 291.22 0.18 -66.89 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.40 Total: 22.53 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: 3.44 Total: -25.15 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -3.44 Total: -77.15 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -2.28 Total: -38.75 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 2.05 Total: 51.63 kcal Total: -67.07 0.18 -66.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258018191.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.268 kcal (2) G-P(sol) polarization free energy of solvation -67.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds