Wall clock time and date at job start Mon Mar 30 2020 03:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.50887 * 2 1 4 4 C 1.52991 * 109.47204 * 57.77405 * 3 2 1 5 5 H 1.08997 * 110.37119 * 308.02028 * 4 3 2 6 6 C 1.54390 * 110.40880 * 185.67335 * 4 3 2 7 7 C 1.54256 * 105.05612 * 217.36898 * 6 4 3 8 8 C 1.54374 * 105.06519 * 0.02562 * 7 6 4 9 9 N 1.48555 * 110.41251 * 70.37478 * 4 3 2 10 10 O 1.43368 * 109.62963 * 239.67459 * 2 1 3 11 11 C 1.44191 * 107.29114 * 240.79210 * 10 2 1 12 12 C 1.54917 * 103.07720 * 21.43955 * 11 10 2 13 13 H 1.09005 * 111.00950 * 82.55499 * 12 11 10 14 14 C 1.50693 * 110.98189 * 206.33295 * 12 11 10 15 15 H 1.08005 * 120.00008 * 353.78437 * 14 12 11 16 16 C 1.37876 * 120.00253 * 173.78745 * 14 12 11 17 17 N 1.31521 * 119.99730 * 179.97438 * 16 14 12 18 18 Si 1.86795 * 120.00134 * 0.02562 * 16 14 12 19 19 H 1.48501 * 109.47084 * 269.99932 * 18 16 14 20 20 H 1.48503 * 109.47256 * 29.99498 * 18 16 14 21 21 H 1.48498 * 109.47466 * 149.99879 * 18 16 14 22 22 O 1.43752 * 109.62797 * 120.31596 * 2 1 3 23 23 H 1.08995 * 109.47122 * 293.32813 * 1 2 3 24 24 H 1.09002 * 109.46933 * 53.32128 * 1 2 3 25 25 H 1.08994 * 109.47245 * 173.32192 * 1 2 3 26 26 H 1.09001 * 109.47137 * 177.78154 * 3 2 1 27 27 H 1.09002 * 109.46715 * 297.77142 * 3 2 1 28 28 H 1.08998 * 110.32245 * 336.26485 * 6 4 3 29 29 H 1.08993 * 110.32190 * 98.37581 * 6 4 3 30 30 H 1.09004 * 110.32385 * 118.89428 * 7 6 4 31 31 H 1.09007 * 110.32531 * 241.09996 * 7 6 4 32 32 H 1.08998 * 110.41429 * 142.63258 * 8 7 6 33 33 H 1.09001 * 110.41281 * 264.95297 * 8 7 6 34 34 H 1.00902 * 111.00164 * 277.81969 * 9 4 3 35 35 H 1.09001 * 110.69512 * 263.04379 * 11 10 2 36 36 H 1.08998 * 110.69709 * 139.83466 * 11 10 2 37 37 H 0.97004 * 119.99332 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 6 1.4863 2.1797 1.2202 5 1 0.4032 2.0681 1.2710 6 6 1.8716 3.6738 1.1673 7 6 2.1642 4.0643 2.6306 8 6 1.9317 2.7733 3.4445 9 7 2.1185 1.6712 2.4646 10 8 2.0117 -0.6818 -1.1656 11 6 2.7884 -1.8089 -0.7125 12 6 2.2652 -2.0391 0.7274 13 1 1.3457 -2.6245 0.7201 14 6 3.3148 -2.6989 1.5839 15 1 4.2408 -3.0346 1.1407 16 6 3.0932 -2.8742 2.9334 17 7 4.0092 -3.4505 3.6808 18 14 1.4914 -2.2945 3.6999 19 1 1.6424 -0.8906 4.1600 20 1 0.4040 -2.3706 2.6915 21 1 1.1544 -3.1612 4.8577 22 8 2.0129 -0.6834 1.1688 23 1 -0.3633 0.4069 0.9436 24 1 -0.3633 0.6139 -0.8242 25 1 -0.3633 -1.0206 -0.1195 26 1 3.1303 1.4417 0.0398 27 1 1.7109 1.9445 -0.9093 28 1 2.7611 3.8138 0.5530 29 1 1.0441 4.2645 0.7745 30 1 3.1974 4.3960 2.7347 31 1 1.4797 4.8470 2.9578 32 1 2.6619 2.6949 4.2500 33 1 0.9191 2.7551 3.8475 34 1 1.6683 0.8248 2.7792 35 1 3.8508 -1.5653 -0.7019 36 1 2.5988 -2.6830 -1.3355 37 1 3.8530 -3.5742 4.6302 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258040043.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:14 Heat of formation + Delta-G solvation = -89.791796 kcal Electronic energy + Delta-G solvation = -18915.532805 eV Core-core repulsion = 16078.699220 eV Total energy + Delta-G solvation = -2836.833585 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.78291 -38.06122 -34.10687 -33.29058 -32.12000 -29.92943 -29.32609 -28.14239 -25.54301 -24.76890 -21.32526 -21.05189 -20.29226 -19.43311 -17.14064 -16.64771 -16.12093 -15.38807 -14.91311 -14.67565 -14.27799 -13.75111 -13.48185 -12.96026 -12.76045 -12.61117 -12.30070 -12.07263 -11.89717 -11.70173 -11.41448 -11.33425 -11.14872 -11.03286 -10.78150 -10.70234 -10.36274 -10.28524 -9.74423 -9.65937 -8.99803 -8.72046 -8.56462 -8.07476 -6.17988 -4.27900 3.34198 3.37093 3.45039 4.26539 4.40923 4.50105 4.68783 4.96038 4.98212 5.22263 5.29025 5.33993 5.47711 5.56700 5.62624 5.77103 5.85593 5.89650 5.92137 5.96665 6.02767 6.08442 6.09958 6.18877 6.26337 6.30764 6.39761 6.39968 6.60568 6.76197 7.08802 7.21342 7.53716 7.85963 8.16704 8.32669 8.80457 9.43081 10.92349 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021102 B = 0.010942 C = 0.008387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.566011 B = 2558.320407 C = 3337.887237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.248 3.752 3 C -0.104 4.104 4 C 0.070 3.930 5 H 0.046 0.954 6 C -0.119 4.119 7 C -0.122 4.122 8 C 0.031 3.969 9 N -0.646 5.646 10 O -0.398 6.398 11 C 0.036 3.964 12 C 0.144 3.856 13 H 0.040 0.960 14 C -0.518 4.518 15 H 0.084 0.916 16 C 0.088 3.912 17 N -0.886 5.886 18 Si 0.901 3.099 19 H -0.270 1.270 20 H -0.269 1.269 21 H -0.299 1.299 22 O -0.366 6.366 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.030 0.970 34 H 0.352 0.648 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.084 11.724 -4.216 14.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.170 3.830 3 C -0.142 4.142 4 C -0.040 4.040 5 H 0.063 0.937 6 C -0.158 4.158 7 C -0.160 4.160 8 C -0.099 4.099 9 N -0.280 5.280 10 O -0.320 6.320 11 C -0.040 4.040 12 C 0.089 3.911 13 H 0.057 0.943 14 C -0.555 4.555 15 H 0.102 0.898 16 C -0.117 4.117 17 N -0.523 5.523 18 Si 0.730 3.270 19 H -0.196 1.196 20 H -0.193 1.193 21 H -0.226 1.226 22 O -0.287 6.287 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.172 0.828 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.333 11.914 -4.210 14.134 hybrid contribution -1.748 0.050 0.752 1.904 sum -8.082 11.964 -3.458 14.846 Atomic orbital electron populations 1.22442 0.96146 1.02588 1.01700 1.23071 0.91294 0.91099 0.77535 1.21809 1.02685 0.93232 0.96451 1.22419 0.96093 0.93515 0.91957 0.93655 1.22332 1.01367 0.95110 0.96945 1.22260 1.01714 0.96945 0.95064 1.22916 0.99105 0.91785 0.96045 1.63654 1.57226 1.04890 1.02187 1.88701 1.69888 1.43020 1.30351 1.24138 0.95961 0.87433 0.96434 1.21980 0.96473 0.81275 0.91370 0.94259 1.20741 1.03730 1.37544 0.93453 0.89826 1.24987 0.96985 0.92769 0.96966 1.69911 1.34276 1.41625 1.06513 0.86437 0.83658 0.78803 0.78090 1.19570 1.19349 1.22628 1.89393 1.84866 1.24653 1.29828 0.91727 0.91911 0.92136 0.89943 0.90942 0.91001 0.91885 0.91227 0.92004 0.90490 0.95181 0.82826 0.91179 0.90102 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 8.60 37.16 0.32 -2.55 16 2 C 0.25 4.81 1.15 -26.73 -0.03 4.78 16 3 C -0.10 -1.76 4.53 -26.74 -0.12 -1.88 16 4 C 0.07 1.10 2.88 -66.07 -0.19 0.91 16 5 H 0.05 0.69 6.19 -51.93 -0.32 0.36 16 6 C -0.12 -1.53 6.55 -25.35 -0.17 -1.70 16 7 C -0.12 -1.51 7.00 -25.35 -0.18 -1.69 16 8 C 0.03 0.47 7.47 -2.14 -0.02 0.45 16 9 N -0.65 -11.90 6.62 -102.69 -0.68 -12.58 16 10 O -0.40 -8.07 10.87 -59.04 -0.64 -8.71 16 11 C 0.04 0.77 7.52 38.17 0.29 1.05 16 12 C 0.14 3.46 2.65 -26.87 -0.07 3.39 16 13 H 0.04 0.95 7.41 -51.93 -0.38 0.57 16 14 C -0.52 -14.49 9.42 -34.44 -0.32 -14.82 16 15 H 0.08 2.49 8.03 -52.48 -0.42 2.06 16 16 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 17 N -0.89 -26.74 13.96 55.43 0.77 -25.96 16 18 Si 0.90 22.29 26.23 -169.99 -4.46 17.83 16 19 H -0.27 -6.52 6.38 56.52 0.36 -6.16 16 20 H -0.27 -6.44 6.62 56.52 0.37 -6.06 16 21 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 22 O -0.37 -8.38 6.25 -59.04 -0.37 -8.75 16 23 H 0.06 1.04 6.61 -51.93 -0.34 0.69 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.07 0.91 7.86 -51.93 -0.41 0.51 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.35 7.26 6.49 -39.29 -0.26 7.01 16 35 H 0.07 1.51 8.03 -51.93 -0.42 1.09 16 36 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 287.61 15.07 4.33 4.33 Total: -1.00 -29.94 287.61 -7.61 -37.55 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.98 Total: 5.92 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -0.59 Total: -9.62 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.09 Total: -38.55 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -1.01 Total: -17.46 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.46 Total: 17.83 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.94 -7.61 -37.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258040043.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.244 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds