Wall clock time and date at job start Mon Mar 30 2020 03:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.50887 * 2 1 4 4 C 1.52991 * 109.47204 * 57.77405 * 3 2 1 5 5 H 1.08997 * 110.37119 * 308.02028 * 4 3 2 6 6 C 1.54390 * 110.40880 * 185.67335 * 4 3 2 7 7 C 1.54256 * 105.05612 * 217.36898 * 6 4 3 8 8 C 1.54374 * 105.06519 * 0.02562 * 7 6 4 9 9 N 1.48555 * 110.41251 * 70.37478 * 4 3 2 10 10 O 1.43368 * 109.62963 * 239.67459 * 2 1 3 11 11 C 1.44191 * 107.29114 * 240.79210 * 10 2 1 12 12 C 1.54917 * 103.07720 * 21.43955 * 11 10 2 13 13 H 1.09005 * 111.00950 * 82.55499 * 12 11 10 14 14 C 1.50693 * 110.98189 * 206.33295 * 12 11 10 15 15 H 1.08005 * 120.00008 * 353.78437 * 14 12 11 16 16 C 1.37876 * 120.00253 * 173.78745 * 14 12 11 17 17 N 1.31521 * 119.99730 * 179.97438 * 16 14 12 18 18 Si 1.86795 * 120.00134 * 0.02562 * 16 14 12 19 19 H 1.48501 * 109.47084 * 269.99932 * 18 16 14 20 20 H 1.48503 * 109.47256 * 29.99498 * 18 16 14 21 21 H 1.48498 * 109.47466 * 149.99879 * 18 16 14 22 22 O 1.43752 * 109.62797 * 120.31596 * 2 1 3 23 23 H 1.08995 * 109.47122 * 293.32813 * 1 2 3 24 24 H 1.09002 * 109.46933 * 53.32128 * 1 2 3 25 25 H 1.08994 * 109.47245 * 173.32192 * 1 2 3 26 26 H 1.09001 * 109.47137 * 177.78154 * 3 2 1 27 27 H 1.09002 * 109.46715 * 297.77142 * 3 2 1 28 28 H 1.08998 * 110.32245 * 336.26485 * 6 4 3 29 29 H 1.08993 * 110.32190 * 98.37581 * 6 4 3 30 30 H 1.09004 * 110.32385 * 118.89428 * 7 6 4 31 31 H 1.09007 * 110.32531 * 241.09996 * 7 6 4 32 32 H 1.08998 * 110.41429 * 142.63258 * 8 7 6 33 33 H 1.09001 * 110.41281 * 264.95297 * 8 7 6 34 34 H 1.00902 * 111.00164 * 277.81969 * 9 4 3 35 35 H 1.09001 * 110.69512 * 263.04379 * 11 10 2 36 36 H 1.08998 * 110.69709 * 139.83466 * 11 10 2 37 37 H 0.97004 * 119.99332 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 6 1.4863 2.1797 1.2202 5 1 0.4032 2.0681 1.2710 6 6 1.8716 3.6738 1.1673 7 6 2.1642 4.0643 2.6306 8 6 1.9317 2.7733 3.4445 9 7 2.1185 1.6712 2.4646 10 8 2.0117 -0.6818 -1.1656 11 6 2.7884 -1.8089 -0.7125 12 6 2.2652 -2.0391 0.7274 13 1 1.3457 -2.6245 0.7201 14 6 3.3148 -2.6989 1.5839 15 1 4.2408 -3.0346 1.1407 16 6 3.0932 -2.8742 2.9334 17 7 4.0092 -3.4505 3.6808 18 14 1.4914 -2.2945 3.6999 19 1 1.6424 -0.8906 4.1600 20 1 0.4040 -2.3706 2.6915 21 1 1.1544 -3.1612 4.8577 22 8 2.0129 -0.6834 1.1688 23 1 -0.3633 0.4069 0.9436 24 1 -0.3633 0.6139 -0.8242 25 1 -0.3633 -1.0206 -0.1195 26 1 3.1303 1.4417 0.0398 27 1 1.7109 1.9445 -0.9093 28 1 2.7611 3.8138 0.5530 29 1 1.0441 4.2645 0.7745 30 1 3.1974 4.3960 2.7347 31 1 1.4797 4.8470 2.9578 32 1 2.6619 2.6949 4.2500 33 1 0.9191 2.7551 3.8475 34 1 1.6683 0.8248 2.7792 35 1 3.8508 -1.5653 -0.7019 36 1 2.5988 -2.6830 -1.3355 37 1 3.8530 -3.5742 4.6302 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258040043.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:14 Heat of formation + Delta-G solvation = -110.978167 kcal Electronic energy + Delta-G solvation = -18916.451515 eV Core-core repulsion = 16078.699220 eV Total energy + Delta-G solvation = -2837.752295 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.37548 -39.29184 -35.87546 -34.99887 -33.93761 -31.09539 -30.86670 -29.68192 -27.01280 -26.48582 -22.90001 -22.61694 -21.48349 -20.75677 -19.22636 -18.00909 -17.71006 -16.96364 -16.56524 -16.06884 -15.69269 -15.44719 -14.99906 -14.63039 -14.55544 -13.99479 -13.74547 -13.54188 -13.27386 -13.01516 -12.88207 -12.68656 -12.59919 -12.47573 -12.23409 -12.14416 -11.95850 -11.75896 -11.52239 -11.31430 -10.88418 -10.72020 -10.23965 -9.35588 -8.38628 -6.53157 1.33733 1.41026 1.48217 2.33822 2.63573 2.93701 3.29737 3.46067 3.79266 3.89000 3.99889 4.10238 4.12489 4.19456 4.28146 4.40510 4.44089 4.52518 4.61026 4.70428 4.77265 4.80922 4.85379 4.97174 5.01234 5.02385 5.10019 5.23372 5.25405 5.30192 5.36316 5.54435 6.03823 6.11085 6.42625 6.46724 6.59992 7.21826 8.75254 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021102 B = 0.010942 C = 0.008387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.566011 B = 2558.320407 C = 3337.887237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.233 3.767 3 C -0.099 4.099 4 C 0.068 3.932 5 H 0.058 0.942 6 C -0.115 4.115 7 C -0.116 4.116 8 C 0.025 3.975 9 N -0.679 5.679 10 O -0.397 6.397 11 C 0.043 3.957 12 C 0.145 3.855 13 H 0.043 0.957 14 C -0.528 4.528 15 H 0.049 0.951 16 C 0.035 3.965 17 N -0.932 5.932 18 Si 0.962 3.038 19 H -0.263 1.263 20 H -0.254 1.254 21 H -0.297 1.297 22 O -0.379 6.379 23 H 0.072 0.928 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.334 0.666 35 H 0.057 0.943 36 H 0.105 0.895 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.441 13.971 -4.967 17.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.156 3.844 3 C -0.137 4.137 4 C -0.041 4.041 5 H 0.076 0.924 6 C -0.153 4.153 7 C -0.154 4.154 8 C -0.104 4.104 9 N -0.310 5.310 10 O -0.319 6.319 11 C -0.033 4.033 12 C 0.089 3.911 13 H 0.060 0.940 14 C -0.565 4.565 15 H 0.067 0.933 16 C -0.165 4.165 17 N -0.571 5.571 18 Si 0.788 3.212 19 H -0.188 1.188 20 H -0.178 1.178 21 H -0.224 1.224 22 O -0.301 6.301 23 H 0.091 0.909 24 H 0.110 0.890 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.152 0.848 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.689 14.186 -4.985 17.366 hybrid contribution -0.944 -0.635 0.921 1.464 sum -9.632 13.552 -4.064 17.115 Atomic orbital electron populations 1.22412 0.93637 1.02935 1.03383 1.23595 0.93177 0.91713 0.75910 1.21827 1.01084 0.92185 0.98602 1.22519 0.96476 0.94992 0.90136 0.92439 1.22343 1.02392 0.93286 0.97236 1.22260 1.02495 0.96210 0.94408 1.23022 0.99505 0.92092 0.95765 1.63661 1.58018 1.05276 1.04074 1.88690 1.69784 1.42696 1.30734 1.24006 0.95354 0.88643 0.95285 1.21750 0.95369 0.81833 0.92128 0.93969 1.20945 1.03492 1.37907 0.94122 0.93298 1.25825 1.00329 0.92857 0.97524 1.70033 1.36505 1.43592 1.06989 0.85470 0.79862 0.78439 0.77399 1.18845 1.17819 1.22397 1.89329 1.85462 1.23781 1.31524 0.90910 0.89007 0.92849 0.92540 0.88171 0.91209 0.89018 0.91312 0.89299 0.91419 0.94064 0.84819 0.92462 0.87743 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.01 8.60 71.98 0.62 -4.39 16 2 C 0.23 8.55 1.15 30.60 0.04 8.58 16 3 C -0.10 -3.13 4.53 30.59 0.14 -2.99 16 4 C 0.07 1.96 2.88 45.06 0.13 2.09 16 5 H 0.06 1.52 6.19 -2.39 -0.01 1.50 16 6 C -0.11 -2.52 6.55 31.49 0.21 -2.32 16 7 C -0.12 -2.51 7.00 31.49 0.22 -2.29 16 8 C 0.03 0.71 7.47 86.43 0.65 1.36 16 9 N -0.68 -24.06 6.62 -478.80 -3.17 -27.24 16 10 O -0.40 -15.39 10.87 -126.22 -1.37 -16.76 16 11 C 0.04 1.80 7.52 72.64 0.55 2.35 16 12 C 0.14 6.92 2.65 30.50 0.08 7.00 16 13 H 0.04 2.00 7.41 -2.38 -0.02 1.99 16 14 C -0.53 -30.36 9.42 25.60 0.24 -30.11 16 15 H 0.05 3.06 8.03 -2.91 -0.02 3.04 16 16 C 0.04 2.07 5.47 84.65 0.46 2.53 16 17 N -0.93 -58.00 13.96 21.45 0.30 -57.70 16 18 Si 0.96 46.27 26.23 68.60 1.80 48.07 16 19 H -0.26 -12.28 6.38 99.48 0.63 -11.65 16 20 H -0.25 -11.48 6.62 99.48 0.66 -10.83 16 21 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 22 O -0.38 -17.04 6.25 -126.22 -0.79 -17.83 16 23 H 0.07 2.08 6.61 -2.39 -0.02 2.06 16 24 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.07 1.57 7.86 -2.39 -0.02 1.55 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.33 13.44 6.49 -89.69 -0.58 12.85 16 35 H 0.06 2.50 8.03 -2.39 -0.02 2.48 16 36 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 37 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -65.79 287.61 0.44 -65.36 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.34 Total: 24.28 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 3.33 Total: -18.19 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -2.87 Total: -84.93 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -2.16 Total: -34.58 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.80 Total: 48.07 kcal Total: -65.79 0.44 -65.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258040043.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.623 kcal (2) G-P(sol) polarization free energy of solvation -65.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds