Wall clock time and date at job start Mon Mar 30 2020 03:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.63006 * 2 1 4 4 C 1.52996 * 109.47196 * 174.46771 * 3 2 1 5 5 H 1.09000 * 110.36939 * 308.08881 * 4 3 2 6 6 C 1.54384 * 110.40886 * 185.74326 * 4 3 2 7 7 C 1.54267 * 105.05896 * 217.36847 * 6 4 3 8 8 C 1.54380 * 105.05882 * 359.97438 * 7 6 4 9 9 N 1.48562 * 104.59657 * 23.85818 * 8 7 6 10 10 O 1.43755 * 109.63292 * 239.60599 * 2 1 3 11 11 C 1.44787 * 104.81338 * 264.43797 * 10 2 1 12 12 C 1.54908 * 101.72129 * 323.89288 * 11 10 2 13 13 H 1.09003 * 110.69751 * 277.16836 * 12 11 10 14 14 C 1.50703 * 110.69670 * 154.13468 * 12 11 10 15 15 H 1.08002 * 119.99316 * 2.37774 * 14 12 11 16 16 C 1.37870 * 120.00406 * 182.37720 * 14 12 11 17 17 N 1.31511 * 120.00355 * 179.97438 * 16 14 12 18 18 Si 1.86802 * 119.99932 * 0.02562 * 16 14 12 19 19 H 1.48495 * 109.47141 * 89.99795 * 18 16 14 20 20 H 1.48499 * 109.47076 * 209.99928 * 18 16 14 21 21 H 1.48504 * 109.47031 * 329.99918 * 18 16 14 22 22 O 1.43788 * 109.58484 * 120.20664 * 2 1 3 23 23 H 1.09003 * 109.46967 * 177.68910 * 1 2 3 24 24 H 1.09000 * 109.47237 * 297.68701 * 1 2 3 25 25 H 1.08998 * 109.47052 * 57.69338 * 1 2 3 26 26 H 1.09007 * 109.46864 * 294.47112 * 3 2 1 27 27 H 1.09001 * 109.46986 * 54.46254 * 3 2 1 28 28 H 1.08996 * 110.32105 * 336.26153 * 6 4 3 29 29 H 1.09002 * 110.32330 * 98.37143 * 6 4 3 30 30 H 1.08991 * 110.32121 * 118.89575 * 7 6 4 31 31 H 1.09002 * 110.31914 * 241.10647 * 7 6 4 32 32 H 1.09004 * 110.40835 * 142.62833 * 8 7 6 33 33 H 1.08995 * 110.41631 * 264.95838 * 8 7 6 34 34 H 1.00891 * 111.00333 * 200.95861 * 9 8 7 35 35 H 1.09011 * 110.97200 * 205.78679 * 11 10 2 36 36 H 1.08997 * 111.01363 * 82.02321 * 11 10 2 37 37 H 0.97005 * 120.00402 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4410 0.0000 4 6 3.5676 1.4391 0.1391 5 1 3.8698 0.8346 0.9943 6 6 4.0967 2.8820 0.2858 7 6 5.4231 2.9046 -0.5014 8 6 5.5842 1.4732 -1.0571 9 7 4.2013 0.9325 -1.1052 10 8 2.0130 -0.6850 -1.1679 11 6 2.2652 -2.0401 -0.7245 12 6 2.7884 -1.8079 0.7150 13 1 3.8508 -1.5643 0.7041 14 6 2.5300 -3.0167 1.5771 15 1 2.0739 -3.8973 1.1494 16 6 2.8758 -2.9984 2.9116 17 7 2.6498 -4.0530 3.6640 18 14 3.6641 -1.4749 3.6513 19 1 2.6053 -0.5715 4.1690 20 1 4.5626 -1.8734 4.7645 21 1 4.4511 -0.7688 2.6085 22 8 2.0120 -0.6816 1.1707 23 1 -0.3633 -1.0269 -0.0414 24 1 -0.3634 0.4775 0.9100 25 1 -0.3633 0.5492 -0.8686 26 1 1.7651 1.9263 -0.9354 27 1 1.6034 1.9839 0.8363 28 1 3.3889 3.5903 -0.1446 29 1 4.2738 3.1153 1.3358 30 1 5.3663 3.6240 -1.3182 31 1 6.2530 3.1483 0.1620 32 1 6.0168 1.5002 -2.0572 33 1 6.2054 0.8745 -0.3910 34 1 4.2079 -0.0762 -1.1230 35 1 3.0245 -2.5182 -1.3434 36 1 1.3461 -2.6259 -0.7159 37 1 2.8935 -4.0403 4.6029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258040045.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:16 Heat of formation + Delta-G solvation = -114.055951 kcal Electronic energy + Delta-G solvation = -19004.196187 eV Core-core repulsion = 16166.310430 eV Total energy + Delta-G solvation = -2837.885757 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.46171 -39.10756 -35.87467 -34.98791 -33.81549 -31.13490 -31.00629 -29.96107 -26.94729 -26.25324 -22.89028 -22.40714 -21.48699 -21.04583 -19.27795 -18.41379 -17.24987 -17.21426 -16.57841 -16.22224 -15.47938 -15.15431 -15.05759 -14.58992 -14.48914 -14.01612 -13.71820 -13.50392 -13.18417 -13.10530 -12.96938 -12.87977 -12.64729 -12.50634 -12.44336 -12.06527 -11.90556 -11.79635 -11.58115 -11.34964 -10.95380 -10.73328 -10.20040 -9.45883 -8.44629 -6.58901 1.27518 1.34346 1.42155 2.26619 2.65012 2.95168 3.33082 3.44835 3.66641 3.86083 4.03839 4.08124 4.12696 4.19881 4.30654 4.37857 4.54819 4.57206 4.66587 4.70423 4.76184 4.81918 4.84994 4.95040 4.98482 5.06913 5.12468 5.21914 5.25250 5.27020 5.31661 5.51033 5.92783 6.05517 6.37908 6.45640 6.59196 7.17027 8.69195 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022789 B = 0.010290 C = 0.008652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.348784 B = 2720.449161 C = 3235.330417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.236 3.764 3 C -0.099 4.099 4 C 0.061 3.939 5 H 0.022 0.978 6 C -0.119 4.119 7 C -0.117 4.117 8 C 0.025 3.975 9 N -0.656 5.656 10 O -0.368 6.368 11 C 0.036 3.964 12 C 0.153 3.847 13 H 0.036 0.964 14 C -0.533 4.533 15 H 0.052 0.948 16 C 0.037 3.963 17 N -0.930 5.930 18 Si 0.957 3.043 19 H -0.275 1.275 20 H -0.288 1.288 21 H -0.257 1.257 22 O -0.407 6.407 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.026 0.974 34 H 0.333 0.667 35 H 0.114 0.886 36 H 0.060 0.940 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.833 14.398 -8.351 16.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.159 3.841 3 C -0.137 4.137 4 C -0.049 4.049 5 H 0.040 0.960 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.104 4.104 9 N -0.286 5.286 10 O -0.289 6.289 11 C -0.040 4.040 12 C 0.098 3.902 13 H 0.054 0.946 14 C -0.570 4.570 15 H 0.071 0.929 16 C -0.165 4.165 17 N -0.569 5.569 18 Si 0.783 3.217 19 H -0.201 1.201 20 H -0.215 1.215 21 H -0.182 1.182 22 O -0.330 6.330 23 H 0.066 0.934 24 H 0.091 0.909 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.045 0.955 34 H 0.149 0.851 35 H 0.132 0.868 36 H 0.079 0.921 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.531 14.956 -8.684 17.479 hybrid contribution 0.536 -0.916 1.529 1.861 sum 3.067 14.041 -7.156 16.054 Atomic orbital electron populations 1.22296 0.93846 1.02497 1.03387 1.23628 0.93232 0.91596 0.75668 1.21870 0.94656 0.93515 1.03633 1.22429 0.94814 0.96463 0.91215 0.95989 1.22360 0.97851 0.94904 1.00574 1.22274 0.97036 0.96213 0.99973 1.23039 0.90296 0.95952 1.01138 1.63742 1.14048 1.14804 1.35996 1.89171 1.85949 1.21737 1.32017 1.24198 1.00881 0.84348 0.94566 1.21501 0.91738 0.84344 0.92652 0.94637 1.21167 1.42267 0.98262 0.95337 0.92940 1.25780 0.94675 0.98505 0.97499 1.70015 1.48096 1.31160 1.07587 0.85550 0.78621 0.79682 0.77878 1.20055 1.21494 1.18161 1.89019 1.70356 1.43266 1.30313 0.93420 0.90914 0.89242 0.88635 0.89427 0.89711 0.91354 0.89730 0.90586 0.89089 0.95544 0.85067 0.86794 0.92132 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.26 9.20 71.98 0.66 -4.60 16 2 C 0.24 8.64 1.06 30.59 0.03 8.67 16 3 C -0.10 -3.04 4.38 30.59 0.13 -2.91 16 4 C 0.06 1.93 2.99 45.07 0.13 2.06 16 5 H 0.02 0.86 7.08 -2.39 -0.02 0.84 16 6 C -0.12 -2.89 6.55 31.49 0.21 -2.68 16 7 C -0.12 -2.50 7.00 31.49 0.22 -2.28 16 8 C 0.03 0.64 7.47 86.45 0.65 1.28 16 9 N -0.66 -20.19 6.63 -479.03 -3.18 -23.37 16 10 O -0.37 -13.57 8.86 -126.25 -1.12 -14.69 16 11 C 0.04 1.44 7.14 72.63 0.52 1.96 16 12 C 0.15 7.18 2.76 30.50 0.08 7.27 16 13 H 0.04 1.70 7.13 -2.39 -0.02 1.68 16 14 C -0.53 -30.19 9.40 25.60 0.24 -29.95 16 15 H 0.05 3.20 8.01 -2.91 -0.02 3.18 16 16 C 0.04 2.13 5.47 84.65 0.46 2.59 16 17 N -0.93 -57.21 13.96 21.44 0.30 -56.91 16 18 Si 0.96 46.97 26.46 68.60 1.82 48.78 16 19 H -0.27 -13.54 7.11 99.48 0.71 -12.83 16 20 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 21 H -0.26 -12.07 6.33 99.48 0.63 -11.44 16 22 O -0.41 -18.55 7.72 -126.25 -0.97 -19.52 16 23 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 27 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.08 1.80 7.86 -2.39 -0.02 1.78 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.33 11.34 7.24 -89.70 -0.65 10.69 16 35 H 0.11 3.93 8.14 -2.38 -0.02 3.91 16 36 H 0.06 2.47 8.03 -2.39 -0.02 2.45 16 37 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 Total: -1.00 -64.21 290.82 0.50 -63.70 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.31 Total: 20.60 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: 3.34 Total: -18.59 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -2.88 Total: -80.28 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -2.09 Total: -34.22 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.82 Total: 48.78 kcal Total: -64.21 0.50 -63.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258040045.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.351 kcal (2) G-P(sol) polarization free energy of solvation -64.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds