Wall clock time and date at job start Mon Mar 30 2020 03:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.62903 * 2 1 4 4 H 1.09001 * 109.50539 * 180.62350 * 3 2 1 5 5 C 1.53123 * 109.50271 * 300.69812 * 3 2 1 6 6 C 1.53120 * 109.21163 * 177.60452 * 5 3 2 7 7 C 1.53048 * 109.27450 * 302.43753 * 6 5 3 8 8 N 1.46848 * 109.57298 * 59.08726 * 7 6 5 9 9 C 1.46842 * 111.19688 * 298.28804 * 8 7 6 10 10 O 1.43369 * 109.62968 * 239.60300 * 2 1 3 11 11 C 1.43905 * 107.44661 * 240.98706 * 10 2 1 12 12 C 1.54913 * 103.06632 * 21.32232 * 11 10 2 13 13 H 1.08997 * 110.98018 * 82.63044 * 12 11 10 14 14 C 1.50703 * 110.97435 * 206.41087 * 12 11 10 15 15 H 1.08000 * 120.00369 * 353.79140 * 14 12 11 16 16 C 1.37885 * 119.99615 * 173.78981 * 14 12 11 17 17 N 1.31509 * 120.00139 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 119.99564 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47127 * 60.00170 * 18 16 14 20 20 H 1.48501 * 109.46833 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47209 * 300.00178 * 18 16 14 22 22 O 1.43754 * 109.62897 * 120.38873 * 2 1 3 23 23 H 1.09003 * 109.46953 * 60.00068 * 1 2 3 24 24 H 1.08997 * 109.47546 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47255 * 300.00305 * 1 2 3 26 26 H 1.09002 * 109.52319 * 297.54245 * 5 3 2 27 27 H 1.08995 * 109.52318 * 57.66927 * 5 3 2 28 28 H 1.09000 * 109.50719 * 62.32149 * 6 5 3 29 29 H 1.09003 * 109.50116 * 182.43702 * 6 5 3 30 30 H 1.08999 * 109.41208 * 299.06816 * 7 6 5 31 31 H 1.08998 * 109.44995 * 179.12696 * 7 6 5 32 32 H 1.00895 * 110.99805 * 174.18748 * 8 7 6 33 33 H 1.09001 * 109.46203 * 301.72398 * 9 8 7 34 34 H 1.09004 * 109.46228 * 181.75951 * 9 8 7 35 35 H 1.08997 * 110.62588 * 262.96416 * 11 10 2 36 36 H 1.08992 * 110.76649 * 139.75095 * 11 10 2 37 37 H 0.97003 * 119.99577 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4410 0.0000 4 1 3.1339 1.4387 -0.0112 5 6 1.5216 2.1701 -1.2411 6 6 1.9902 3.6273 -1.2039 7 6 1.4964 4.2840 0.0873 8 7 2.0237 3.5505 1.2451 9 6 1.5474 2.1616 1.2555 10 8 2.0116 -0.6833 -1.1647 11 6 2.7837 -1.8113 -0.7149 12 6 2.2617 -2.0409 0.7255 13 1 1.3410 -2.6243 0.7185 14 6 3.3111 -2.7034 1.5804 15 1 4.2358 -3.0408 1.1359 16 6 3.0907 -2.8789 2.9302 17 7 1.9646 -2.4686 3.4713 18 14 4.3913 -3.7008 3.9897 19 1 5.6484 -2.9124 3.9310 20 1 3.9150 -3.7681 5.3947 21 1 4.6446 -5.0745 3.4860 22 8 2.0129 -0.6849 1.1680 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.9085 1.6858 -2.1378 27 1 0.4322 2.1379 -1.2509 28 1 3.0793 3.6604 -1.2346 29 1 1.5850 4.1619 -2.0632 30 1 0.4068 4.2640 0.1102 31 1 1.8415 5.3172 0.1240 32 1 1.7899 4.0195 2.1073 33 1 0.4575 2.1515 1.2730 34 1 1.9293 1.6533 2.1409 35 1 3.8466 -1.5698 -0.7054 36 1 2.5915 -2.6845 -1.3381 37 1 1.8094 -2.5924 4.4208 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258419170.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:42 Heat of formation + Delta-G solvation = -99.563296 kcal Electronic energy + Delta-G solvation = -18731.509438 eV Core-core repulsion = 15894.252130 eV Total energy + Delta-G solvation = -2837.257309 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.76319 -37.80068 -33.89249 -33.13193 -32.16838 -31.20857 -28.76375 -27.73351 -24.77882 -23.72414 -23.14704 -21.05859 -20.58902 -18.61911 -17.00075 -16.20100 -15.86360 -15.15762 -14.63536 -14.48747 -14.30704 -13.77619 -13.65297 -13.09410 -12.78239 -12.67368 -12.31965 -12.08139 -11.98302 -11.60926 -11.29766 -11.14989 -10.91262 -10.81353 -10.60898 -10.54989 -10.18775 -10.10496 -9.92789 -9.27293 -8.87377 -8.66143 -8.23965 -8.21343 -6.12330 -4.26733 3.28080 3.32692 3.35159 4.29364 4.35294 4.57532 4.91460 5.11434 5.14420 5.22372 5.44072 5.46568 5.66799 5.68971 5.81750 5.89526 5.93542 5.99377 6.12600 6.15076 6.20512 6.24482 6.31140 6.37462 6.43433 6.58107 6.66532 6.70391 6.83617 7.02875 7.25812 7.41161 7.58232 7.77097 8.10039 8.46157 8.82197 9.44627 10.95462 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031424 B = 0.007305 C = 0.006614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.830730 B = 3832.264338 C = 4232.174769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.249 3.751 3 C -0.078 4.078 4 H 0.081 0.919 5 C -0.113 4.113 6 C -0.116 4.116 7 C 0.058 3.942 8 N -0.691 5.691 9 C 0.068 3.932 10 O -0.399 6.399 11 C 0.023 3.977 12 C 0.186 3.814 13 H 0.037 0.963 14 C -0.537 4.537 15 H 0.068 0.932 16 C 0.080 3.920 17 N -0.861 5.861 18 Si 0.897 3.103 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 O -0.347 6.347 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.025 0.975 31 H 0.068 0.932 32 H 0.340 0.660 33 H 0.030 0.970 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.531 9.308 -6.125 11.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.170 3.830 3 C -0.097 4.097 4 H 0.099 0.901 5 C -0.150 4.150 6 C -0.154 4.154 7 C -0.072 4.072 8 N -0.322 5.322 9 C -0.060 4.060 10 O -0.320 6.320 11 C -0.053 4.053 12 C 0.131 3.869 13 H 0.055 0.945 14 C -0.574 4.574 15 H 0.086 0.914 16 C -0.127 4.127 17 N -0.496 5.496 18 Si 0.724 3.276 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.200 1.200 22 O -0.268 6.268 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.157 0.843 33 H 0.048 0.952 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.071 9.318 -6.256 11.413 hybrid contribution -0.325 -0.426 0.911 1.057 sum -2.396 8.892 -5.345 10.648 Atomic orbital electron populations 1.22409 0.96069 1.02523 1.01414 1.23039 0.91619 0.90390 0.77916 1.21328 1.01587 0.92605 0.94165 0.90094 1.21608 1.00305 0.94674 0.98439 1.21586 1.01682 0.95977 0.96175 1.21909 0.96485 0.97101 0.91690 1.60224 1.63747 1.03181 1.05036 1.21933 0.96859 0.87800 0.99457 1.88614 1.69960 1.42592 1.30867 1.24271 0.95632 0.87498 0.97915 1.21404 0.95951 0.81306 0.88222 0.94520 1.20822 1.03467 1.39357 0.93735 0.91398 1.25058 0.95394 0.94207 0.98031 1.70021 1.23619 1.43657 1.12290 0.86589 0.81881 0.79906 0.79232 1.19909 1.21070 1.19955 1.89582 1.84626 1.24253 1.28290 0.92356 0.92254 0.91431 0.91254 0.92258 0.91324 0.92017 0.95673 0.91388 0.84279 0.95190 0.89294 0.91991 0.90506 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 8.49 37.16 0.32 -2.83 16 2 C 0.25 5.26 0.82 -26.73 -0.02 5.24 16 3 C -0.08 -1.44 2.15 -90.54 -0.19 -1.63 16 4 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 5 C -0.11 -1.73 4.81 -26.61 -0.13 -1.86 16 6 C -0.12 -1.52 6.10 -26.64 -0.16 -1.68 16 7 C 0.06 0.73 6.55 -3.83 -0.03 0.70 16 8 N -0.69 -10.14 6.85 -113.81 -0.78 -10.92 16 9 C 0.07 1.19 5.36 -3.84 -0.02 1.16 16 10 O -0.40 -8.58 10.28 -59.05 -0.61 -9.19 16 11 C 0.02 0.51 7.51 38.17 0.29 0.80 16 12 C 0.19 4.82 3.31 -26.87 -0.09 4.74 16 13 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 14 C -0.54 -14.84 8.85 -34.44 -0.30 -15.15 16 15 H 0.07 1.80 7.79 -52.49 -0.41 1.39 16 16 C 0.08 2.22 5.43 -17.82 -0.10 2.13 16 17 N -0.86 -25.00 12.96 55.43 0.72 -24.28 16 18 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 22 O -0.35 -8.94 9.64 -59.05 -0.57 -9.51 16 23 H 0.06 0.96 6.38 -51.93 -0.33 0.63 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.07 1.23 6.44 -51.93 -0.33 0.90 16 26 H 0.07 1.10 7.80 -51.93 -0.40 0.70 16 27 H 0.06 0.88 6.31 -51.93 -0.33 0.55 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.34 4.29 8.90 -39.29 -0.35 3.94 16 33 H 0.03 0.50 6.42 -51.93 -0.33 0.17 16 34 H 0.09 1.79 7.72 -51.93 -0.40 1.38 16 35 H 0.06 1.36 8.03 -51.93 -0.42 0.94 16 36 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 289.18 15.07 4.36 4.36 Total: -1.00 -29.64 289.18 -8.17 -37.81 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.82 Total: 4.09 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -0.44 Total: -8.38 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: -0.06 Total: -35.20 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -1.18 Total: -18.70 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.64 -8.17 -37.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258419170.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.753 kcal (2) G-P(sol) polarization free energy of solvation -29.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds