Wall clock time and date at job start Mon Mar 30 2020 03:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.62903 * 2 1 4 4 H 1.09001 * 109.50539 * 180.62350 * 3 2 1 5 5 C 1.53123 * 109.50271 * 300.69812 * 3 2 1 6 6 C 1.53120 * 109.21163 * 177.60452 * 5 3 2 7 7 C 1.53048 * 109.27450 * 302.43753 * 6 5 3 8 8 N 1.46848 * 109.57298 * 59.08726 * 7 6 5 9 9 C 1.46842 * 111.19688 * 298.28804 * 8 7 6 10 10 O 1.43369 * 109.62968 * 239.60300 * 2 1 3 11 11 C 1.43905 * 107.44661 * 240.98706 * 10 2 1 12 12 C 1.54913 * 103.06632 * 21.32232 * 11 10 2 13 13 H 1.08997 * 110.98018 * 82.63044 * 12 11 10 14 14 C 1.50703 * 110.97435 * 206.41087 * 12 11 10 15 15 H 1.08000 * 120.00369 * 353.79140 * 14 12 11 16 16 C 1.37885 * 119.99615 * 173.78981 * 14 12 11 17 17 N 1.31509 * 120.00139 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 119.99564 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47127 * 60.00170 * 18 16 14 20 20 H 1.48501 * 109.46833 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47209 * 300.00178 * 18 16 14 22 22 O 1.43754 * 109.62897 * 120.38873 * 2 1 3 23 23 H 1.09003 * 109.46953 * 60.00068 * 1 2 3 24 24 H 1.08997 * 109.47546 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47255 * 300.00305 * 1 2 3 26 26 H 1.09002 * 109.52319 * 297.54245 * 5 3 2 27 27 H 1.08995 * 109.52318 * 57.66927 * 5 3 2 28 28 H 1.09000 * 109.50719 * 62.32149 * 6 5 3 29 29 H 1.09003 * 109.50116 * 182.43702 * 6 5 3 30 30 H 1.08999 * 109.41208 * 299.06816 * 7 6 5 31 31 H 1.08998 * 109.44995 * 179.12696 * 7 6 5 32 32 H 1.00895 * 110.99805 * 174.18748 * 8 7 6 33 33 H 1.09001 * 109.46203 * 301.72398 * 9 8 7 34 34 H 1.09004 * 109.46228 * 181.75951 * 9 8 7 35 35 H 1.08997 * 110.62588 * 262.96416 * 11 10 2 36 36 H 1.08992 * 110.76649 * 139.75095 * 11 10 2 37 37 H 0.97003 * 119.99577 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4410 0.0000 4 1 3.1339 1.4387 -0.0112 5 6 1.5216 2.1701 -1.2411 6 6 1.9902 3.6273 -1.2039 7 6 1.4964 4.2840 0.0873 8 7 2.0237 3.5505 1.2451 9 6 1.5474 2.1616 1.2555 10 8 2.0116 -0.6833 -1.1647 11 6 2.7837 -1.8113 -0.7149 12 6 2.2617 -2.0409 0.7255 13 1 1.3410 -2.6243 0.7185 14 6 3.3111 -2.7034 1.5804 15 1 4.2358 -3.0408 1.1359 16 6 3.0907 -2.8789 2.9302 17 7 1.9646 -2.4686 3.4713 18 14 4.3913 -3.7008 3.9897 19 1 5.6484 -2.9124 3.9310 20 1 3.9150 -3.7681 5.3947 21 1 4.6446 -5.0745 3.4860 22 8 2.0129 -0.6849 1.1680 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.9085 1.6858 -2.1378 27 1 0.4322 2.1379 -1.2509 28 1 3.0793 3.6604 -1.2346 29 1 1.5850 4.1619 -2.0632 30 1 0.4068 4.2640 0.1102 31 1 1.8415 5.3172 0.1240 32 1 1.7899 4.0195 2.1073 33 1 0.4575 2.1515 1.2730 34 1 1.9293 1.6533 2.1409 35 1 3.8466 -1.5698 -0.7054 36 1 2.5915 -2.6845 -1.3381 37 1 1.8094 -2.5924 4.4208 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258419170.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:42 Heat of formation + Delta-G solvation = -120.478895 kcal Electronic energy + Delta-G solvation = -18732.416407 eV Core-core repulsion = 15894.252130 eV Total energy + Delta-G solvation = -2838.164277 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.44240 -39.17117 -35.78789 -34.88178 -33.87022 -32.48401 -30.47473 -29.39754 -26.75776 -25.00436 -24.54272 -22.98624 -21.92715 -20.03895 -18.96199 -17.69601 -17.64516 -16.84447 -16.51766 -16.04154 -15.52999 -15.44559 -14.89739 -14.73502 -14.35776 -14.13187 -13.95575 -13.78580 -13.37344 -13.23010 -12.88521 -12.86783 -12.73340 -12.41758 -12.40242 -11.98512 -11.69727 -11.57990 -11.26863 -11.11319 -10.84120 -10.58535 -10.10530 -9.37762 -8.23335 -6.45500 1.40692 1.43885 1.51366 2.36706 2.72593 3.00851 3.27365 3.55301 3.81637 3.94923 3.99247 4.17188 4.25175 4.27824 4.36125 4.41216 4.48142 4.54214 4.64762 4.70002 4.78464 4.87424 4.94095 4.97490 5.03322 5.08993 5.12671 5.29085 5.36105 5.42941 5.50578 5.63437 6.03664 6.07267 6.50291 6.53516 6.78796 7.30358 8.85156 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031424 B = 0.007305 C = 0.006614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.830730 B = 3832.264338 C = 4232.174769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.237 3.763 3 C -0.073 4.073 4 H 0.052 0.948 5 C -0.107 4.107 6 C -0.113 4.113 7 C 0.056 3.944 8 N -0.699 5.699 9 C 0.079 3.921 10 O -0.398 6.398 11 C 0.033 3.967 12 C 0.179 3.821 13 H 0.010 0.990 14 C -0.559 4.559 15 H 0.073 0.927 16 C 0.027 3.973 17 N -0.897 5.897 18 Si 0.967 3.033 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.261 1.261 22 O -0.377 6.377 23 H 0.088 0.912 24 H 0.043 0.957 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.036 0.964 31 H 0.093 0.907 32 H 0.352 0.648 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.101 0.899 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.429 10.551 -6.958 12.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.159 3.841 3 C -0.093 4.093 4 H 0.071 0.929 5 C -0.144 4.144 6 C -0.151 4.151 7 C -0.073 4.073 8 N -0.331 5.331 9 C -0.051 4.051 10 O -0.319 6.319 11 C -0.043 4.043 12 C 0.124 3.876 13 H 0.028 0.972 14 C -0.596 4.596 15 H 0.091 0.909 16 C -0.176 4.176 17 N -0.533 5.533 18 Si 0.791 3.209 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.185 1.185 22 O -0.298 6.298 23 H 0.106 0.894 24 H 0.062 0.938 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.054 0.946 31 H 0.111 0.889 32 H 0.170 0.830 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.969 10.571 -7.104 12.888 hybrid contribution -0.385 -0.768 1.129 1.418 sum -2.355 9.804 -5.976 11.720 Atomic orbital electron populations 1.22355 0.94306 1.02042 1.03007 1.23475 0.93002 0.91245 0.76379 1.21283 0.99864 0.91539 0.96605 0.92897 1.21580 1.00812 0.95916 0.96117 1.21605 1.01246 0.94468 0.97778 1.22038 0.97171 0.97873 0.90205 1.60170 1.64169 1.02061 1.06731 1.21661 0.96973 0.89228 0.97191 1.88589 1.69998 1.42419 1.30919 1.24162 0.95503 0.88555 0.96104 1.21287 0.94672 0.81359 0.90329 0.97238 1.21231 1.03996 1.39855 0.94554 0.90869 1.25954 0.97529 0.94740 0.99395 1.70154 1.25603 1.44995 1.12579 0.85490 0.78836 0.79280 0.77309 1.19584 1.20636 1.18521 1.89518 1.85249 1.24218 1.30780 0.89382 0.93814 0.91089 0.91804 0.91100 0.92283 0.88956 0.94553 0.88861 0.82951 0.94403 0.93069 0.92025 0.88082 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.95 8.49 71.98 0.61 -5.34 16 2 C 0.24 10.10 0.82 30.59 0.03 10.12 16 3 C -0.07 -2.71 2.15 -10.74 -0.02 -2.73 16 4 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 5 C -0.11 -3.06 4.81 30.68 0.15 -2.91 16 6 C -0.11 -2.61 6.10 30.65 0.19 -2.42 16 7 C 0.06 1.22 6.55 86.33 0.57 1.79 16 8 N -0.70 -19.49 6.85 -513.99 -3.52 -23.01 16 9 C 0.08 2.73 5.36 86.33 0.46 3.19 16 10 O -0.40 -17.02 10.28 -126.21 -1.30 -18.32 16 11 C 0.03 1.47 7.51 72.64 0.55 2.01 16 12 C 0.18 9.55 3.31 30.50 0.10 9.65 16 13 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 14 C -0.56 -31.56 8.85 25.60 0.23 -31.33 16 15 H 0.07 3.92 7.79 -2.91 -0.02 3.90 16 16 C 0.03 1.53 5.43 84.66 0.46 1.98 16 17 N -0.90 -53.50 12.96 21.45 0.28 -53.23 16 18 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 21 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 22 O -0.38 -20.09 9.64 -126.21 -1.22 -21.31 16 23 H 0.09 2.71 6.38 -2.39 -0.02 2.70 16 24 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.07 2.57 6.44 -2.39 -0.02 2.56 16 26 H 0.06 1.90 7.80 -2.39 -0.02 1.88 16 27 H 0.07 1.87 6.31 -2.39 -0.02 1.86 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.60 16 30 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.35 8.35 8.90 -89.70 -0.80 7.55 16 33 H 0.04 1.23 6.42 -2.39 -0.02 1.22 16 34 H 0.05 2.14 7.72 -2.38 -0.02 2.12 16 35 H 0.06 2.72 8.03 -2.39 -0.02 2.70 16 36 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 37 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -65.03 289.18 -0.16 -65.19 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.26 Total: 21.11 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 3.31 Total: -15.99 kcal Atomic # 7 Polarization: -73.00 SS G_CDS: -3.24 Total: -76.24 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -2.51 Total: -39.63 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -65.03 -0.16 -65.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258419170.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.285 kcal (2) G-P(sol) polarization free energy of solvation -65.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds