Wall clock time and date at job start Mon Mar 30 2020 03:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.50424 * 2 1 4 4 H 1.09004 * 109.50365 * 60.31950 * 3 2 1 5 5 C 1.53116 * 109.50413 * 300.23880 * 3 2 1 6 6 C 1.53126 * 109.16010 * 182.44377 * 5 3 2 7 7 C 1.53039 * 109.30815 * 57.59256 * 6 5 3 8 8 N 1.46846 * 109.52499 * 300.84420 * 7 6 5 9 9 C 1.46850 * 111.19610 * 61.74379 * 8 7 6 10 10 O 1.43359 * 109.63176 * 239.68227 * 2 1 3 11 11 C 1.44240 * 107.30699 * 240.82447 * 10 2 1 12 12 C 1.54906 * 103.05541 * 21.38055 * 11 10 2 13 13 H 1.09005 * 110.97521 * 82.61435 * 12 11 10 14 14 C 1.50694 * 110.97978 * 206.36318 * 12 11 10 15 15 H 1.08002 * 120.00179 * 356.88890 * 14 12 11 16 16 C 1.37879 * 120.00472 * 176.89207 * 14 12 11 17 17 N 1.31514 * 119.99350 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00608 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.47339 * 179.97438 * 18 16 14 20 20 H 1.48493 * 109.47239 * 300.00306 * 18 16 14 21 21 H 1.48504 * 109.46636 * 59.99865 * 18 16 14 22 22 O 1.43752 * 109.63074 * 120.31826 * 2 1 3 23 23 H 1.08994 * 109.46997 * 300.38028 * 1 2 3 24 24 H 1.08991 * 109.47359 * 60.38601 * 1 2 3 25 25 H 1.09002 * 109.46804 * 180.38581 * 1 2 3 26 26 H 1.08997 * 109.52388 * 302.31075 * 5 3 2 27 27 H 1.09000 * 109.52378 * 62.50249 * 5 3 2 28 28 H 1.08998 * 109.46742 * 297.65885 * 6 5 3 29 29 H 1.08996 * 109.53427 * 177.57607 * 6 5 3 30 30 H 1.08999 * 109.46224 * 180.82705 * 7 6 5 31 31 H 1.09006 * 109.45813 * 60.85855 * 7 6 5 32 32 H 1.00896 * 110.99605 * 185.83479 * 8 7 6 33 33 H 1.09008 * 109.45972 * 178.24533 * 9 8 7 34 34 H 1.08992 * 109.46450 * 58.27286 * 9 8 7 35 35 H 1.09002 * 110.67796 * 263.00245 * 11 10 2 36 36 H 1.09001 * 110.73012 * 139.79035 * 11 10 2 37 37 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 1 1.6828 1.9551 0.8927 5 6 1.5264 2.1668 -1.2469 6 6 2.0917 3.5897 -1.2704 7 6 3.6205 3.5274 -1.2435 8 7 4.0619 2.8261 -0.0312 9 6 3.5712 1.4421 -0.0100 10 8 2.0117 -0.6816 -1.1656 11 6 2.7882 -1.8097 -0.7128 12 6 2.2653 -2.0390 0.7272 13 1 1.3459 -2.6245 0.7199 14 6 3.3151 -2.6989 1.5836 15 1 4.2608 -2.9897 1.1506 16 6 3.0683 -2.9314 2.9201 17 7 1.9169 -2.5769 3.4475 18 14 4.3693 -3.7500 3.9816 19 1 3.8619 -3.8848 5.3706 20 1 4.6798 -5.0952 3.4348 21 1 5.6007 -2.9201 3.9833 22 8 2.0130 -0.6835 1.1688 23 1 -0.3633 0.5197 0.8865 24 1 -0.3633 0.5078 -0.8933 25 1 -0.3633 -1.0277 0.0069 26 1 1.8513 1.6316 -2.1392 27 1 0.4375 2.2072 -1.2215 28 1 1.7344 4.1369 -0.3981 29 1 1.7640 4.0971 -2.1777 30 1 4.0253 4.5394 -1.2453 31 1 3.9777 2.9919 -2.1232 32 1 5.0665 2.8549 0.0577 33 1 3.9402 0.9396 0.8842 34 1 3.9286 0.9165 -0.8954 35 1 3.8507 -1.5665 -0.7027 36 1 2.5980 -2.6839 -1.3356 37 1 1.7431 -2.7408 4.3876 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258419175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:45 Heat of formation + Delta-G solvation = -101.494782 kcal Electronic energy + Delta-G solvation = -18822.898386 eV Core-core repulsion = 15985.557321 eV Total energy + Delta-G solvation = -2837.341064 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.79480 -37.62907 -33.87546 -33.12739 -32.20967 -31.00094 -29.00383 -27.86583 -24.74448 -23.76717 -22.71288 -21.17059 -20.35129 -19.00598 -17.02431 -16.20258 -15.89269 -15.05335 -14.66149 -14.28673 -14.16349 -13.68357 -13.64279 -13.23848 -12.87264 -12.55824 -12.35586 -12.21309 -11.94224 -11.49049 -11.17032 -11.10736 -10.97298 -10.90909 -10.60458 -10.50033 -10.33501 -10.02452 -9.93441 -9.29502 -8.88500 -8.68456 -8.25356 -8.16492 -6.14134 -4.29125 3.26541 3.31735 3.33459 4.31620 4.43203 4.53608 4.88787 5.13501 5.14305 5.25780 5.38277 5.53590 5.66197 5.70821 5.89178 5.98031 6.04132 6.08184 6.12938 6.14940 6.20111 6.22051 6.28177 6.30974 6.44069 6.59484 6.68828 6.76358 6.81069 6.97595 7.30676 7.39793 7.62821 7.75353 8.08423 8.46286 8.80414 9.42748 10.93769 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031388 B = 0.007503 C = 0.006857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.857184 B = 3730.847871 C = 4082.534293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.248 3.752 3 C -0.078 4.078 4 H 0.083 0.917 5 C -0.113 4.113 6 C -0.116 4.116 7 C 0.058 3.942 8 N -0.692 5.692 9 C 0.069 3.931 10 O -0.398 6.398 11 C 0.023 3.977 12 C 0.187 3.813 13 H 0.039 0.961 14 C -0.536 4.536 15 H 0.067 0.933 16 C 0.080 3.920 17 N -0.860 5.860 18 Si 0.897 3.103 19 H -0.285 1.285 20 H -0.274 1.274 21 H -0.274 1.274 22 O -0.350 6.350 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.026 0.974 32 H 0.339 0.661 33 H 0.086 0.914 34 H 0.031 0.969 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.550 8.311 -8.007 11.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.169 3.831 3 C -0.097 4.097 4 H 0.101 0.899 5 C -0.150 4.150 6 C -0.154 4.154 7 C -0.072 4.072 8 N -0.322 5.322 9 C -0.060 4.060 10 O -0.320 6.320 11 C -0.053 4.053 12 C 0.132 3.868 13 H 0.057 0.943 14 C -0.573 4.573 15 H 0.085 0.915 16 C -0.127 4.127 17 N -0.496 5.496 18 Si 0.724 3.276 19 H -0.210 1.210 20 H -0.200 1.200 21 H -0.199 1.199 22 O -0.270 6.270 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.156 0.844 33 H 0.105 0.895 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.100 8.706 -7.450 11.459 hybrid contribution 1.183 -0.972 -0.028 1.531 sum 1.083 7.734 -7.478 10.813 Atomic orbital electron populations 1.22327 0.95721 1.02587 1.01497 1.23079 0.91769 0.90369 0.77862 1.21366 0.95423 0.94278 0.98635 0.89873 1.21600 1.00038 0.95001 0.98375 1.21578 0.94921 0.97367 1.01493 1.21893 0.96194 0.98023 0.91070 1.60293 1.16333 1.16843 1.38769 1.21847 0.95051 0.87474 1.01582 1.88687 1.69761 1.42736 1.30808 1.24310 0.95424 0.87587 0.97996 1.21383 0.96026 0.81294 0.88131 0.94337 1.20803 1.01743 1.39885 0.94918 0.91503 1.25067 0.95395 0.94230 0.98014 1.70015 1.22298 1.43952 1.13285 0.86585 0.81801 0.79872 0.79332 1.21026 1.19954 1.19928 1.89592 1.84603 1.24452 1.28390 0.91477 0.92300 0.92200 0.91633 0.91856 0.91419 0.92069 0.91484 0.95620 0.84417 0.89521 0.95035 0.92187 0.90572 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 8.82 37.16 0.33 -2.76 16 2 C 0.25 5.19 0.73 -26.73 -0.02 5.17 16 3 C -0.08 -1.43 2.00 -90.54 -0.18 -1.61 16 4 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 5 C -0.11 -1.72 4.74 -26.61 -0.13 -1.84 16 6 C -0.12 -1.51 6.09 -26.65 -0.16 -1.67 16 7 C 0.06 0.76 6.55 -3.83 -0.03 0.73 16 8 N -0.69 -10.51 6.85 -113.81 -0.78 -11.29 16 9 C 0.07 1.26 5.54 -3.83 -0.02 1.24 16 10 O -0.40 -8.36 9.48 -59.04 -0.56 -8.92 16 11 C 0.02 0.50 7.52 38.16 0.29 0.79 16 12 C 0.19 4.78 3.26 -26.88 -0.09 4.70 16 13 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 14 C -0.54 -14.67 8.84 -34.44 -0.30 -14.98 16 15 H 0.07 1.75 7.78 -52.49 -0.41 1.34 16 16 C 0.08 2.21 5.44 -17.82 -0.10 2.12 16 17 N -0.86 -25.04 13.08 55.43 0.73 -24.32 16 18 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 O -0.35 -8.97 9.82 -59.04 -0.58 -9.55 16 23 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.06 0.95 6.51 -51.93 -0.34 0.62 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.06 1.06 7.64 -51.93 -0.40 0.66 16 27 H 0.06 0.90 6.58 -51.93 -0.34 0.56 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.34 4.51 8.90 -39.29 -0.35 4.16 16 33 H 0.09 1.81 7.72 -51.92 -0.40 1.41 16 34 H 0.03 0.59 7.64 -51.93 -0.40 0.19 16 35 H 0.06 1.28 8.02 -51.93 -0.42 0.87 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 LS Contribution 292.00 15.07 4.40 4.40 Total: -1.00 -29.43 292.00 -8.21 -37.64 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -5.99 Total: 4.24 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -0.41 Total: -8.12 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.05 Total: -35.60 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -1.14 Total: -18.47 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.43 -8.21 -37.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258419175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.853 kcal (2) G-P(sol) polarization free energy of solvation -29.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds