Wall clock time and date at job start Mon Mar 30 2020 03:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.50424 * 2 1 4 4 H 1.09004 * 109.50365 * 60.31950 * 3 2 1 5 5 C 1.53116 * 109.50413 * 300.23880 * 3 2 1 6 6 C 1.53126 * 109.16010 * 182.44377 * 5 3 2 7 7 C 1.53039 * 109.30815 * 57.59256 * 6 5 3 8 8 N 1.46846 * 109.52499 * 300.84420 * 7 6 5 9 9 C 1.46850 * 111.19610 * 61.74379 * 8 7 6 10 10 O 1.43359 * 109.63176 * 239.68227 * 2 1 3 11 11 C 1.44240 * 107.30699 * 240.82447 * 10 2 1 12 12 C 1.54906 * 103.05541 * 21.38055 * 11 10 2 13 13 H 1.09005 * 110.97521 * 82.61435 * 12 11 10 14 14 C 1.50694 * 110.97978 * 206.36318 * 12 11 10 15 15 H 1.08002 * 120.00179 * 356.88890 * 14 12 11 16 16 C 1.37879 * 120.00472 * 176.89207 * 14 12 11 17 17 N 1.31514 * 119.99350 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00608 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.47339 * 179.97438 * 18 16 14 20 20 H 1.48493 * 109.47239 * 300.00306 * 18 16 14 21 21 H 1.48504 * 109.46636 * 59.99865 * 18 16 14 22 22 O 1.43752 * 109.63074 * 120.31826 * 2 1 3 23 23 H 1.08994 * 109.46997 * 300.38028 * 1 2 3 24 24 H 1.08991 * 109.47359 * 60.38601 * 1 2 3 25 25 H 1.09002 * 109.46804 * 180.38581 * 1 2 3 26 26 H 1.08997 * 109.52388 * 302.31075 * 5 3 2 27 27 H 1.09000 * 109.52378 * 62.50249 * 5 3 2 28 28 H 1.08998 * 109.46742 * 297.65885 * 6 5 3 29 29 H 1.08996 * 109.53427 * 177.57607 * 6 5 3 30 30 H 1.08999 * 109.46224 * 180.82705 * 7 6 5 31 31 H 1.09006 * 109.45813 * 60.85855 * 7 6 5 32 32 H 1.00896 * 110.99605 * 185.83479 * 8 7 6 33 33 H 1.09008 * 109.45972 * 178.24533 * 9 8 7 34 34 H 1.08992 * 109.46450 * 58.27286 * 9 8 7 35 35 H 1.09002 * 110.67796 * 263.00245 * 11 10 2 36 36 H 1.09001 * 110.73012 * 139.79035 * 11 10 2 37 37 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 1 1.6828 1.9551 0.8927 5 6 1.5264 2.1668 -1.2469 6 6 2.0917 3.5897 -1.2704 7 6 3.6205 3.5274 -1.2435 8 7 4.0619 2.8261 -0.0312 9 6 3.5712 1.4421 -0.0100 10 8 2.0117 -0.6816 -1.1656 11 6 2.7882 -1.8097 -0.7128 12 6 2.2653 -2.0390 0.7272 13 1 1.3459 -2.6245 0.7199 14 6 3.3151 -2.6989 1.5836 15 1 4.2608 -2.9897 1.1506 16 6 3.0683 -2.9314 2.9201 17 7 1.9169 -2.5769 3.4475 18 14 4.3693 -3.7500 3.9816 19 1 3.8619 -3.8848 5.3706 20 1 4.6798 -5.0952 3.4348 21 1 5.6007 -2.9201 3.9833 22 8 2.0130 -0.6835 1.1688 23 1 -0.3633 0.5197 0.8865 24 1 -0.3633 0.5078 -0.8933 25 1 -0.3633 -1.0277 0.0069 26 1 1.8513 1.6316 -2.1392 27 1 0.4375 2.2072 -1.2215 28 1 1.7344 4.1369 -0.3981 29 1 1.7640 4.0971 -2.1777 30 1 4.0253 4.5394 -1.2453 31 1 3.9777 2.9919 -2.1232 32 1 5.0665 2.8549 0.0577 33 1 3.9402 0.9396 0.8842 34 1 3.9286 0.9165 -0.8954 35 1 3.8507 -1.5665 -0.7027 36 1 2.5980 -2.6839 -1.3356 37 1 1.7431 -2.7408 4.3876 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258419175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:45 Heat of formation + Delta-G solvation = -122.024523 kcal Electronic energy + Delta-G solvation = -18823.788622 eV Core-core repulsion = 15985.557321 eV Total energy + Delta-G solvation = -2838.231301 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.46691 -38.99645 -35.75198 -34.88181 -33.91794 -32.30309 -30.60187 -29.62561 -26.71849 -25.04975 -24.06602 -23.09501 -21.76236 -20.42590 -18.97891 -17.73551 -17.58875 -16.79885 -16.51831 -15.79336 -15.46619 -15.27823 -15.11448 -14.60249 -14.44979 -14.17876 -13.94190 -13.85708 -13.39326 -13.18387 -12.89320 -12.81028 -12.68617 -12.43040 -12.20405 -12.17844 -11.74168 -11.48284 -11.33013 -11.11632 -10.83200 -10.58389 -10.09504 -9.40509 -8.24302 -6.46696 1.40422 1.43344 1.51135 2.36120 2.77640 3.03338 3.22397 3.53453 3.84805 3.93353 4.07325 4.17031 4.20722 4.27800 4.38250 4.46967 4.57295 4.58128 4.64006 4.73948 4.80832 4.85139 4.96270 5.00255 5.02449 5.09028 5.17179 5.21847 5.36821 5.42264 5.51089 5.62993 6.03425 6.06751 6.49475 6.53997 6.78905 7.29749 8.84481 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031388 B = 0.007503 C = 0.006857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.857184 B = 3730.847871 C = 4082.534293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.237 3.763 3 C -0.075 4.075 4 H 0.070 0.930 5 C -0.107 4.107 6 C -0.113 4.113 7 C 0.055 3.945 8 N -0.695 5.695 9 C 0.081 3.919 10 O -0.394 6.394 11 C 0.035 3.965 12 C 0.181 3.819 13 H 0.009 0.991 14 C -0.556 4.556 15 H 0.073 0.927 16 C 0.026 3.974 17 N -0.900 5.900 18 Si 0.967 3.033 19 H -0.282 1.282 20 H -0.260 1.260 21 H -0.270 1.270 22 O -0.380 6.380 23 H 0.067 0.933 24 H 0.089 0.911 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.028 0.972 32 H 0.349 0.651 33 H 0.049 0.951 34 H 0.023 0.977 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.248 9.480 -9.165 13.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.159 3.841 3 C -0.095 4.095 4 H 0.088 0.912 5 C -0.144 4.144 6 C -0.150 4.150 7 C -0.074 4.074 8 N -0.327 5.327 9 C -0.049 4.049 10 O -0.315 6.315 11 C -0.041 4.041 12 C 0.126 3.874 13 H 0.026 0.974 14 C -0.593 4.593 15 H 0.091 0.909 16 C -0.177 4.177 17 N -0.536 5.536 18 Si 0.791 3.209 19 H -0.207 1.207 20 H -0.185 1.185 21 H -0.195 1.195 22 O -0.302 6.302 23 H 0.086 0.914 24 H 0.108 0.892 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.046 0.954 32 H 0.167 0.833 33 H 0.068 0.932 34 H 0.041 0.959 35 H 0.080 0.920 36 H 0.116 0.884 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.607 9.884 -8.632 13.136 hybrid contribution 0.934 -1.286 0.290 1.616 sum 1.541 8.597 -8.342 12.078 Atomic orbital electron populations 1.22302 0.94301 1.02019 1.03075 1.23481 0.92948 0.91282 0.76400 1.21344 0.95558 0.92643 0.99911 0.91181 1.21575 1.00812 0.96042 0.95980 1.21601 0.94687 0.95769 1.02962 1.22042 0.96436 0.99035 0.89910 1.60267 1.17246 1.14814 1.40398 1.21559 0.94975 0.89031 0.99320 1.88663 1.69773 1.42483 1.30612 1.24180 0.95421 0.88579 0.95970 1.21242 0.94604 0.81246 0.90346 0.97377 1.21213 1.02267 1.40151 0.95636 0.90871 1.25971 0.97496 0.94779 0.99432 1.70154 1.24402 1.45515 1.13573 0.85487 0.78821 0.79265 0.77346 1.20739 1.18493 1.19463 1.89521 1.85211 1.24472 1.30958 0.91383 0.89183 0.93832 0.92190 0.90649 0.91542 0.89074 0.88800 0.95413 0.83287 0.93212 0.95867 0.91957 0.88382 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.98 8.82 71.98 0.64 -5.35 16 2 C 0.24 9.97 0.73 30.60 0.02 10.00 16 3 C -0.08 -2.73 2.00 -10.74 -0.02 -2.75 16 4 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 5 C -0.11 -3.01 4.74 30.68 0.15 -2.86 16 6 C -0.11 -2.56 6.09 30.65 0.19 -2.37 16 7 C 0.05 1.26 6.55 86.33 0.57 1.83 16 8 N -0.70 -20.14 6.85 -513.99 -3.52 -23.66 16 9 C 0.08 2.93 5.54 86.32 0.48 3.41 16 10 O -0.39 -16.34 9.48 -126.22 -1.20 -17.54 16 11 C 0.03 1.51 7.52 72.63 0.55 2.05 16 12 C 0.18 9.55 3.26 30.50 0.10 9.65 16 13 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 14 C -0.56 -30.99 8.84 25.60 0.23 -30.76 16 15 H 0.07 3.86 7.78 -2.91 -0.02 3.84 16 16 C 0.03 1.48 5.44 84.66 0.46 1.94 16 17 N -0.90 -53.89 13.08 21.45 0.28 -53.61 16 18 Si 0.97 43.30 29.54 68.60 2.03 45.33 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 20 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 O -0.38 -20.17 9.82 -126.22 -1.24 -21.41 16 23 H 0.07 2.50 8.14 -2.39 -0.02 2.49 16 24 H 0.09 2.76 6.51 -2.39 -0.02 2.75 16 25 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.78 7.64 -2.39 -0.02 1.76 16 27 H 0.07 1.94 6.58 -2.39 -0.02 1.92 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.35 8.82 8.90 -89.70 -0.80 8.02 16 33 H 0.05 2.15 7.72 -2.38 -0.02 2.13 16 34 H 0.02 0.87 7.64 -2.39 -0.02 0.85 16 35 H 0.06 2.66 8.02 -2.39 -0.02 2.64 16 36 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 37 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 Total: -1.00 -64.43 292.00 -0.05 -64.49 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.25 Total: 21.62 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 3.34 Total: -15.22 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -3.24 Total: -77.27 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -2.44 Total: -38.94 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -64.43 -0.05 -64.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258419175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.539 kcal (2) G-P(sol) polarization free energy of solvation -64.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds