Wall clock time and date at job start Mon Mar 30 2020 03:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.62812 * 2 1 4 4 H 1.09004 * 109.50248 * 60.70448 * 3 2 1 5 5 C 1.53112 * 109.50308 * 300.62731 * 3 2 1 6 6 C 1.53125 * 109.15988 * 182.40370 * 5 3 2 7 7 C 1.53035 * 109.27505 * 57.65085 * 6 5 3 8 8 N 1.46843 * 109.52928 * 300.81935 * 7 6 5 9 9 C 1.46850 * 111.22796 * 61.72465 * 8 7 6 10 10 O 1.43756 * 109.62750 * 239.76117 * 2 1 3 11 11 C 1.44787 * 104.81380 * 264.43051 * 10 2 1 12 12 C 1.54913 * 101.72249 * 323.90195 * 11 10 2 13 13 H 1.09004 * 110.69362 * 277.15834 * 12 11 10 14 14 C 1.50697 * 110.69549 * 153.95881 * 12 11 10 15 15 H 1.07998 * 120.00377 * 4.88323 * 14 12 11 16 16 C 1.37888 * 120.00035 * 184.88929 * 14 12 11 17 17 N 1.31508 * 119.99771 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00074 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47038 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46927 * 119.99665 * 18 16 14 21 21 H 1.48497 * 109.47152 * 239.99667 * 18 16 14 22 22 O 1.43364 * 109.63134 * 120.39533 * 2 1 3 23 23 H 1.09001 * 109.47002 * 300.30325 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.30762 * 1 2 3 25 25 H 1.09000 * 109.47050 * 180.30591 * 1 2 3 26 26 H 1.09003 * 109.52113 * 302.30645 * 5 3 2 27 27 H 1.09001 * 109.52911 * 62.43410 * 5 3 2 28 28 H 1.08998 * 109.50457 * 177.59091 * 6 5 3 29 29 H 1.08992 * 109.50166 * 297.71094 * 6 5 3 30 30 H 1.09003 * 109.46277 * 60.84222 * 7 6 5 31 31 H 1.09001 * 109.45993 * 180.80363 * 7 6 5 32 32 H 1.00893 * 111.00176 * 297.65475 * 8 7 6 33 33 H 1.08998 * 109.49740 * 178.28735 * 9 8 7 34 34 H 1.08999 * 109.43263 * 58.31625 * 9 8 7 35 35 H 1.08995 * 110.97906 * 205.79290 * 11 10 2 36 36 H 1.09006 * 111.00903 * 82.02157 * 11 10 2 37 37 H 0.97005 * 120.00411 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 1 1.6927 1.9527 0.8961 5 6 1.5232 2.1696 -1.2419 6 6 2.0905 3.5916 -1.2653 7 6 3.6193 3.5259 -1.2493 8 7 4.0677 2.8207 -0.0418 9 6 3.5743 1.4378 -0.0197 10 8 2.0129 -0.6819 -1.1698 11 6 2.2653 -2.0381 -0.7300 12 6 2.7885 -1.8098 0.7101 13 1 3.8509 -1.5662 0.6998 14 6 2.5264 -3.0192 1.5700 15 1 2.1054 -3.9122 1.1321 16 6 2.8239 -2.9858 2.9159 17 7 3.3369 -1.8986 3.4491 18 14 2.4983 -4.4848 3.9820 19 1 1.9217 -5.5696 3.1478 20 1 3.7730 -4.9487 4.5863 21 1 1.5409 -4.1274 5.0594 22 8 2.0117 -0.6832 1.1647 23 1 -0.3633 0.5185 0.8873 24 1 -0.3633 0.5090 -0.8927 25 1 -0.3633 -1.0277 0.0055 26 1 1.8412 1.6357 -2.1375 27 1 0.4344 2.2112 -1.2101 28 1 1.7576 4.1014 -2.1694 29 1 1.7405 4.1375 -0.3892 30 1 3.9692 2.9920 -2.1328 31 1 4.0263 4.5371 -1.2514 32 1 3.7889 3.3169 0.7913 33 1 3.9478 0.9325 0.8710 34 1 3.9249 0.9133 -0.9085 35 1 3.0245 -2.5145 -1.3501 36 1 1.3461 -2.6240 -0.7229 37 1 3.5466 -1.8751 4.3959 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258419177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:47 Heat of formation + Delta-G solvation = -102.443423 kcal Electronic energy + Delta-G solvation = -18844.886715 eV Core-core repulsion = 16007.504515 eV Total energy + Delta-G solvation = -2837.382200 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.87026 -37.80513 -33.89996 -33.04955 -32.08584 -30.92797 -28.96210 -27.92045 -24.75833 -23.63640 -22.64749 -21.24089 -20.58993 -19.34780 -16.76969 -16.23413 -15.61671 -15.18861 -14.86485 -14.55448 -14.38456 -13.67387 -13.30093 -13.10788 -12.84539 -12.33611 -12.25357 -11.98883 -11.86764 -11.58766 -11.34066 -11.11065 -10.98593 -10.92377 -10.82982 -10.58613 -10.39610 -10.19868 -10.06966 -9.37063 -9.02393 -8.66586 -8.25272 -7.88717 -6.11029 -4.25940 3.24867 3.33050 3.36189 4.33533 4.50785 4.56964 4.86618 5.05372 5.13061 5.23017 5.33706 5.45633 5.58885 5.72064 5.82143 5.85673 5.95792 6.05132 6.09280 6.12476 6.15326 6.19624 6.28506 6.31048 6.40603 6.58395 6.64331 6.70680 6.77929 6.89254 7.32139 7.46405 7.67732 7.77582 8.11383 8.48351 8.85991 9.45961 10.96307 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036504 B = 0.007198 C = 0.006668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.861979 B = 3889.286560 C = 4198.422704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.254 3.746 3 C -0.117 4.117 4 H 0.075 0.925 5 C -0.112 4.112 6 C -0.156 4.156 7 C 0.056 3.944 8 N -0.686 5.686 9 C 0.068 3.932 10 O -0.392 6.392 11 C 0.019 3.981 12 C 0.190 3.810 13 H 0.041 0.959 14 C -0.542 4.542 15 H 0.066 0.934 16 C 0.081 3.919 17 N -0.858 5.858 18 Si 0.894 3.106 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.282 1.282 22 O -0.354 6.354 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.337 0.663 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.581 7.842 -7.482 11.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.175 3.825 3 C -0.138 4.138 4 H 0.093 0.907 5 C -0.149 4.149 6 C -0.195 4.195 7 C -0.074 4.074 8 N -0.314 5.314 9 C -0.062 4.062 10 O -0.313 6.313 11 C -0.057 4.057 12 C 0.135 3.865 13 H 0.059 0.941 14 C -0.579 4.579 15 H 0.084 0.916 16 C -0.126 4.126 17 N -0.493 5.493 18 Si 0.721 3.279 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.208 1.208 22 O -0.275 6.275 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.154 0.846 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.874 7.914 -7.584 11.120 hybrid contribution -1.341 -0.750 0.855 1.758 sum -3.215 7.164 -6.729 10.341 Atomic orbital electron populations 1.22348 0.96111 1.02517 1.01344 1.22988 0.91559 0.90237 0.77752 1.22098 0.98540 0.95061 0.98108 0.90660 1.21603 0.99863 0.94791 0.98675 1.22272 0.98151 0.97450 1.01665 1.22009 0.92448 0.98533 0.94380 1.60722 1.62442 1.03696 1.04502 1.21993 0.91379 0.88920 1.03875 1.89032 1.86159 1.23019 1.33099 1.24513 1.00079 0.83216 0.97920 1.21252 0.92035 0.85090 0.88161 0.94124 1.21020 1.45569 0.97201 0.94149 0.91577 1.25049 0.93600 0.95911 0.98066 1.70035 1.40091 1.26714 1.12486 0.86517 0.78089 0.82791 0.80463 1.19574 1.20741 1.20789 1.89244 1.69759 1.42849 1.25615 0.91851 0.92237 0.92159 0.91219 0.92152 0.91936 0.92350 0.91152 0.91395 0.84637 0.89297 0.90774 0.89600 0.92175 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 8.82 37.16 0.33 -2.70 16 2 C 0.25 5.19 0.73 -26.73 -0.02 5.17 16 3 C -0.12 -2.08 1.98 -90.54 -0.18 -2.26 16 4 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 5 C -0.11 -1.65 4.74 -26.61 -0.13 -1.78 16 6 C -0.16 -1.93 6.08 -26.65 -0.16 -2.09 16 7 C 0.06 0.73 6.55 -3.84 -0.03 0.70 16 8 N -0.69 -10.57 6.87 -113.82 -0.78 -11.35 16 9 C 0.07 1.23 5.55 -3.83 -0.02 1.21 16 10 O -0.39 -8.07 9.60 -59.04 -0.57 -8.63 16 11 C 0.02 0.40 7.33 38.17 0.28 0.68 16 12 C 0.19 4.81 3.51 -26.88 -0.09 4.71 16 13 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 14 C -0.54 -14.82 8.83 -34.44 -0.30 -15.12 16 15 H 0.07 1.75 7.78 -52.49 -0.41 1.34 16 16 C 0.08 2.23 5.42 -17.82 -0.10 2.13 16 17 N -0.86 -24.85 12.95 55.43 0.72 -24.14 16 18 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 O -0.35 -8.95 9.49 -59.04 -0.56 -9.51 16 23 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.06 0.94 6.51 -51.93 -0.34 0.60 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 26 H 0.07 1.10 7.65 -51.93 -0.40 0.70 16 27 H 0.06 0.85 6.58 -51.93 -0.34 0.50 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.34 4.84 8.86 -39.30 -0.35 4.49 16 33 H 0.09 1.91 7.73 -51.93 -0.40 1.51 16 34 H 0.07 1.43 7.63 -51.93 -0.40 1.03 16 35 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 36 H 0.06 1.26 8.04 -51.93 -0.42 0.85 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 291.66 15.07 4.40 4.40 Total: -1.00 -29.02 291.66 -8.23 -37.24 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.99 Total: 5.41 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -0.42 Total: -9.33 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: -0.06 Total: -35.48 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -1.13 Total: -18.15 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.02 -8.23 -37.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258419177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.202 kcal (2) G-P(sol) polarization free energy of solvation -29.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds