Wall clock time and date at job start Mon Mar 30 2020 03:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.62812 * 2 1 4 4 H 1.09004 * 109.50248 * 60.70448 * 3 2 1 5 5 C 1.53112 * 109.50308 * 300.62731 * 3 2 1 6 6 C 1.53125 * 109.15988 * 182.40370 * 5 3 2 7 7 C 1.53035 * 109.27505 * 57.65085 * 6 5 3 8 8 N 1.46843 * 109.52928 * 300.81935 * 7 6 5 9 9 C 1.46850 * 111.22796 * 61.72465 * 8 7 6 10 10 O 1.43756 * 109.62750 * 239.76117 * 2 1 3 11 11 C 1.44787 * 104.81380 * 264.43051 * 10 2 1 12 12 C 1.54913 * 101.72249 * 323.90195 * 11 10 2 13 13 H 1.09004 * 110.69362 * 277.15834 * 12 11 10 14 14 C 1.50697 * 110.69549 * 153.95881 * 12 11 10 15 15 H 1.07998 * 120.00377 * 4.88323 * 14 12 11 16 16 C 1.37888 * 120.00035 * 184.88929 * 14 12 11 17 17 N 1.31508 * 119.99771 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00074 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47038 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46927 * 119.99665 * 18 16 14 21 21 H 1.48497 * 109.47152 * 239.99667 * 18 16 14 22 22 O 1.43364 * 109.63134 * 120.39533 * 2 1 3 23 23 H 1.09001 * 109.47002 * 300.30325 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.30762 * 1 2 3 25 25 H 1.09000 * 109.47050 * 180.30591 * 1 2 3 26 26 H 1.09003 * 109.52113 * 302.30645 * 5 3 2 27 27 H 1.09001 * 109.52911 * 62.43410 * 5 3 2 28 28 H 1.08998 * 109.50457 * 177.59091 * 6 5 3 29 29 H 1.08992 * 109.50166 * 297.71094 * 6 5 3 30 30 H 1.09003 * 109.46277 * 60.84222 * 7 6 5 31 31 H 1.09001 * 109.45993 * 180.80363 * 7 6 5 32 32 H 1.00893 * 111.00176 * 297.65475 * 8 7 6 33 33 H 1.08998 * 109.49740 * 178.28735 * 9 8 7 34 34 H 1.08999 * 109.43263 * 58.31625 * 9 8 7 35 35 H 1.08995 * 110.97906 * 205.79290 * 11 10 2 36 36 H 1.09006 * 111.00903 * 82.02157 * 11 10 2 37 37 H 0.97005 * 120.00411 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 1 1.6927 1.9527 0.8961 5 6 1.5232 2.1696 -1.2419 6 6 2.0905 3.5916 -1.2653 7 6 3.6193 3.5259 -1.2493 8 7 4.0677 2.8207 -0.0418 9 6 3.5743 1.4378 -0.0197 10 8 2.0129 -0.6819 -1.1698 11 6 2.2653 -2.0381 -0.7300 12 6 2.7885 -1.8098 0.7101 13 1 3.8509 -1.5662 0.6998 14 6 2.5264 -3.0192 1.5700 15 1 2.1054 -3.9122 1.1321 16 6 2.8239 -2.9858 2.9159 17 7 3.3369 -1.8986 3.4491 18 14 2.4983 -4.4848 3.9820 19 1 1.9217 -5.5696 3.1478 20 1 3.7730 -4.9487 4.5863 21 1 1.5409 -4.1274 5.0594 22 8 2.0117 -0.6832 1.1647 23 1 -0.3633 0.5185 0.8873 24 1 -0.3633 0.5090 -0.8927 25 1 -0.3633 -1.0277 0.0055 26 1 1.8412 1.6357 -2.1375 27 1 0.4344 2.2112 -1.2101 28 1 1.7576 4.1014 -2.1694 29 1 1.7405 4.1375 -0.3892 30 1 3.9692 2.9920 -2.1328 31 1 4.0263 4.5371 -1.2514 32 1 3.7889 3.3169 0.7913 33 1 3.9478 0.9325 0.8710 34 1 3.9249 0.9133 -0.9085 35 1 3.0245 -2.5145 -1.3501 36 1 1.3461 -2.6240 -0.7229 37 1 3.5466 -1.8751 4.3959 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258419177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:47 Heat of formation + Delta-G solvation = -122.622774 kcal Electronic energy + Delta-G solvation = -18845.761757 eV Core-core repulsion = 16007.504515 eV Total energy + Delta-G solvation = -2838.257243 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.49660 -39.18205 -35.75817 -34.81117 -33.78594 -32.19237 -30.55876 -29.61878 -26.71175 -24.91314 -24.00416 -23.12392 -21.91699 -20.82694 -18.83130 -17.87888 -17.16880 -16.77715 -16.55158 -16.09489 -15.67302 -15.21968 -14.87662 -14.65501 -14.45797 -13.97346 -13.69053 -13.55760 -13.38300 -13.15055 -12.90331 -12.81662 -12.66905 -12.43439 -12.31449 -12.10979 -12.02732 -11.63027 -11.46611 -11.23227 -10.83930 -10.64404 -10.05379 -9.21981 -8.20453 -6.43118 1.40199 1.41297 1.53746 2.37477 2.80374 3.06556 3.31220 3.55134 3.77799 3.90472 3.94993 4.14628 4.26655 4.27068 4.37687 4.44437 4.54122 4.58297 4.61257 4.63579 4.79427 4.90065 4.98775 5.01134 5.05358 5.08737 5.18389 5.20460 5.31008 5.43855 5.46186 5.65703 6.06926 6.07345 6.47758 6.55663 6.87871 7.33464 8.87655 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036504 B = 0.007198 C = 0.006668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.861979 B = 3889.286560 C = 4198.422704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.240 3.760 3 C -0.113 4.113 4 H 0.070 0.930 5 C -0.105 4.105 6 C -0.148 4.148 7 C 0.054 3.946 8 N -0.692 5.692 9 C 0.082 3.918 10 O -0.388 6.388 11 C 0.029 3.971 12 C 0.185 3.815 13 H 0.007 0.993 14 C -0.561 4.561 15 H 0.072 0.928 16 C 0.027 3.973 17 N -0.897 5.897 18 Si 0.965 3.035 19 H -0.260 1.260 20 H -0.275 1.275 21 H -0.281 1.281 22 O -0.384 6.384 23 H 0.066 0.934 24 H 0.088 0.912 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.343 0.657 33 H 0.044 0.956 34 H 0.059 0.941 35 H 0.107 0.893 36 H 0.066 0.934 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.745 8.538 -8.517 12.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.162 3.838 3 C -0.133 4.133 4 H 0.089 0.911 5 C -0.143 4.143 6 C -0.187 4.187 7 C -0.075 4.075 8 N -0.320 5.320 9 C -0.048 4.048 10 O -0.309 6.309 11 C -0.047 4.047 12 C 0.130 3.870 13 H 0.025 0.975 14 C -0.598 4.598 15 H 0.090 0.910 16 C -0.176 4.176 17 N -0.533 5.533 18 Si 0.789 3.211 19 H -0.184 1.184 20 H -0.201 1.201 21 H -0.207 1.207 22 O -0.306 6.306 23 H 0.085 0.915 24 H 0.107 0.893 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.161 0.839 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.084 0.916 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.045 8.618 -8.641 12.578 hybrid contribution -0.950 -0.902 1.134 1.733 sum -3.994 7.716 -7.507 11.482 Atomic orbital electron populations 1.22315 0.94189 1.02331 1.02942 1.23441 0.93000 0.91121 0.76283 1.22059 0.97893 0.93661 0.99708 0.91150 1.21569 1.00661 0.95857 0.96192 1.22220 0.97193 0.95880 1.03407 1.22132 0.93293 0.99349 0.92709 1.60665 1.62750 1.02500 1.06057 1.21628 0.91924 0.90360 1.00868 1.89018 1.86299 1.22628 1.32962 1.24393 1.00693 0.83794 0.95807 1.21064 0.90583 0.84898 0.90443 0.97543 1.21418 1.45370 0.98177 0.94863 0.91025 1.25942 0.93274 0.98898 0.99529 1.70179 1.41405 1.28967 1.12774 0.85415 0.78039 0.79183 0.78423 1.18379 1.20087 1.20688 1.89162 1.69865 1.43288 1.28275 0.91536 0.89290 0.93259 0.92071 0.90787 0.89242 0.91526 0.91636 0.88773 0.83939 0.93760 0.92231 0.87524 0.91589 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.66 8.82 71.98 0.64 -5.02 16 2 C 0.24 9.82 0.73 30.60 0.02 9.84 16 3 C -0.11 -3.95 1.98 -10.74 -0.02 -3.97 16 4 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 5 C -0.11 -2.85 4.74 30.67 0.15 -2.71 16 6 C -0.15 -3.15 6.08 30.65 0.19 -2.97 16 7 C 0.05 1.27 6.55 86.33 0.57 1.84 16 8 N -0.69 -20.92 6.87 -514.01 -3.53 -24.45 16 9 C 0.08 3.09 5.55 86.33 0.48 3.57 16 10 O -0.39 -15.84 9.60 -126.22 -1.21 -17.05 16 11 C 0.03 1.25 7.33 72.64 0.53 1.78 16 12 C 0.19 9.73 3.51 30.50 0.11 9.84 16 13 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 14 C -0.56 -31.24 8.83 25.60 0.23 -31.01 16 15 H 0.07 3.79 7.78 -2.91 -0.02 3.77 16 16 C 0.03 1.50 5.42 84.66 0.46 1.95 16 17 N -0.90 -53.64 12.95 21.45 0.28 -53.36 16 18 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 19 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 O -0.38 -20.10 9.49 -126.22 -1.20 -21.29 16 23 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.09 2.58 6.51 -2.39 -0.02 2.57 16 25 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.06 1.78 7.65 -2.39 -0.02 1.77 16 27 H 0.07 1.82 6.58 -2.39 -0.02 1.80 16 28 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.34 9.64 8.86 -89.70 -0.79 8.84 16 33 H 0.04 2.03 7.73 -2.39 -0.02 2.02 16 34 H 0.06 2.37 7.63 -2.39 -0.02 2.35 16 35 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 36 H 0.07 2.73 8.04 -2.38 -0.02 2.71 16 37 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 Total: -1.00 -64.01 291.66 -0.05 -64.05 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.25 Total: 23.55 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: 3.34 Total: -16.85 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -3.25 Total: -77.81 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -2.41 Total: -38.34 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -64.01 -0.05 -64.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258419177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.568 kcal (2) G-P(sol) polarization free energy of solvation -64.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds