Wall clock time and date at job start Mon Mar 30 2020 03:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.62742 * 2 1 4 4 C 1.53114 * 109.52344 * 183.81151 * 3 2 1 5 5 C 1.53042 * 109.27835 * 182.50523 * 4 3 2 6 6 N 1.46846 * 109.57474 * 59.08402 * 5 4 3 7 7 C 1.46852 * 111.19645 * 298.29322 * 6 5 4 8 8 C 1.53034 * 109.52439 * 61.74350 * 7 6 5 9 9 O 1.43751 * 109.63147 * 120.39474 * 2 1 3 10 10 C 1.44789 * 104.81514 * 95.56720 * 9 2 1 11 11 C 1.54916 * 101.72122 * 36.10246 * 10 9 2 12 12 H 1.08998 * 110.69497 * 83.01017 * 11 10 9 13 13 C 1.50695 * 110.69156 * 206.04253 * 11 10 9 14 14 H 1.08004 * 120.00546 * 0.27759 * 13 11 10 15 15 C 1.37885 * 119.99721 * 180.02562 * 13 11 10 16 16 N 1.31514 * 120.00035 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99853 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46986 * 90.00256 * 17 15 13 19 19 H 1.48496 * 109.47029 * 210.00273 * 17 15 13 20 20 H 1.48499 * 109.47352 * 330.00102 * 17 15 13 21 21 O 1.43374 * 109.63037 * 239.75939 * 2 1 3 22 22 H 1.08997 * 109.47241 * 300.30922 * 1 2 3 23 23 H 1.09000 * 109.46957 * 60.30610 * 1 2 3 24 24 H 1.09003 * 109.46894 * 180.30320 * 1 2 3 25 25 H 1.08999 * 109.52481 * 303.94081 * 3 2 1 26 26 H 1.08998 * 109.50505 * 302.38446 * 4 3 2 27 27 H 1.09007 * 109.50428 * 62.49916 * 4 3 2 28 28 H 1.09005 * 109.40711 * 299.07229 * 5 4 3 29 29 H 1.09002 * 109.46718 * 179.13481 * 5 4 3 30 30 H 1.00901 * 111.00295 * 174.19694 * 6 5 4 31 31 H 1.08997 * 109.46004 * 301.72126 * 7 6 5 32 32 H 1.08998 * 109.44949 * 181.75398 * 7 6 5 33 33 H 1.08999 * 109.50288 * 180.88206 * 8 7 6 34 34 H 1.09000 * 109.53738 * 60.77796 * 8 7 6 35 35 H 1.09007 * 110.97454 * 277.99327 * 10 9 2 36 36 H 1.08997 * 111.01013 * 154.22727 * 10 9 2 37 37 H 0.97000 * 119.99706 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 6 3.5721 1.4394 -0.0959 5 6 4.0840 2.8803 -0.0325 6 7 3.6542 3.5000 1.2275 7 6 2.1896 3.5558 1.3193 8 6 1.6214 2.1350 1.2979 9 8 2.0130 -0.6850 1.1679 10 6 2.2653 -2.0401 0.7244 11 6 2.7886 -1.8078 -0.7151 12 1 3.8516 -1.5672 -0.7044 13 6 2.5263 -3.0150 -1.5782 14 1 2.0291 -3.8788 -1.1620 15 6 2.9165 -3.0147 -2.9007 16 7 3.5179 -1.9613 -3.4086 17 14 2.5921 -4.5114 -3.9704 18 1 1.2637 -4.3767 -4.6204 19 1 3.6451 -4.6126 -5.0125 20 1 2.6096 -5.7347 -3.1287 21 8 2.0117 -0.6801 -1.1666 22 1 -0.3633 0.5186 0.8872 23 1 -0.3633 0.5091 -0.8927 24 1 -0.3633 -1.0277 0.0054 25 1 1.6261 1.9769 -0.8523 26 1 3.9883 0.8694 0.7348 27 1 3.8771 0.9850 -1.0387 28 1 3.6792 3.4457 -0.8720 29 1 5.1727 2.8816 -0.0851 30 1 4.0584 4.4182 1.3352 31 1 1.7939 4.1181 0.4736 32 1 1.9027 4.0477 2.2486 33 1 0.5334 2.1774 1.3503 34 1 2.0054 1.5760 2.1512 35 1 1.3457 -2.6254 0.7158 36 1 3.0243 -2.5188 1.3431 37 1 3.7927 -1.9613 -4.3389 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258432058.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:07 Heat of formation + Delta-G solvation = -121.774211 kcal Electronic energy + Delta-G solvation = -18806.420353 eV Core-core repulsion = 15968.199907 eV Total energy + Delta-G solvation = -2838.220446 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.42807 -39.00436 -35.74315 -34.88306 -33.91002 -31.79028 -31.00012 -29.63548 -26.73501 -25.20292 -23.78170 -23.07725 -21.73730 -20.44948 -18.82792 -18.06063 -17.37563 -16.91216 -16.63846 -15.73802 -15.52919 -15.21106 -14.93777 -14.49252 -14.41679 -14.27724 -13.87623 -13.57581 -13.44556 -13.06533 -12.99097 -12.80228 -12.65429 -12.38995 -12.33006 -12.09746 -11.87185 -11.53343 -11.37365 -11.07066 -10.80878 -10.60637 -9.94510 -9.36560 -8.21991 -6.44730 1.40468 1.41554 1.52541 2.37004 2.81600 3.07929 3.32589 3.49305 3.78100 3.89830 4.04118 4.27672 4.29398 4.30706 4.37685 4.43062 4.57767 4.61514 4.65941 4.70517 4.72772 4.82803 4.93781 5.00065 5.03373 5.12081 5.18501 5.28919 5.38893 5.47676 5.54018 5.65306 6.07095 6.07872 6.57243 6.59434 6.87436 7.31994 8.86301 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036023 B = 0.007190 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.101626 B = 3893.120087 C = 4242.860450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.237 3.763 3 C -0.081 4.081 4 C -0.100 4.100 5 C 0.068 3.932 6 N -0.695 5.695 7 C 0.062 3.938 8 C -0.102 4.102 9 O -0.387 6.387 10 C 0.029 3.971 11 C 0.186 3.814 12 H 0.008 0.992 13 C -0.559 4.559 14 H 0.071 0.929 15 C 0.026 3.974 16 N -0.900 5.900 17 Si 0.967 3.033 18 H -0.275 1.275 19 H -0.280 1.280 20 H -0.259 1.259 21 O -0.390 6.390 22 H 0.090 0.910 23 H 0.067 0.933 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.039 0.961 28 H 0.031 0.969 29 H 0.079 0.921 30 H 0.354 0.646 31 H 0.035 0.965 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.221 9.114 7.733 12.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.159 3.841 3 C -0.100 4.100 4 C -0.138 4.138 5 C -0.061 4.061 6 N -0.328 5.328 7 C -0.067 4.067 8 C -0.139 4.139 9 O -0.308 6.308 10 C -0.048 4.048 11 C 0.131 3.869 12 H 0.025 0.975 13 C -0.596 4.596 14 H 0.089 0.911 15 C -0.177 4.177 16 N -0.537 5.537 17 Si 0.790 3.210 18 H -0.201 1.201 19 H -0.205 1.205 20 H -0.183 1.183 21 O -0.312 6.312 22 H 0.109 0.891 23 H 0.086 0.914 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.097 0.903 30 H 0.174 0.826 31 H 0.053 0.947 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.123 0.877 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.099 8.772 7.945 12.234 hybrid contribution -0.106 -0.321 -1.572 1.608 sum -3.205 8.451 6.374 11.059 Atomic orbital electron populations 1.22317 0.94004 1.02384 1.03088 1.23513 0.93036 0.91328 0.76187 1.21437 0.96140 0.93221 0.99199 1.21353 0.95248 0.96914 1.00306 1.21792 1.00173 0.93769 0.90369 1.60206 1.09437 1.27616 1.35546 1.21953 0.87276 0.95885 1.01616 1.21568 1.00636 0.95734 0.96010 1.89037 1.86335 1.22504 1.32907 1.24377 1.00610 0.83943 0.95825 1.21036 0.90648 0.84746 0.90456 0.97455 1.21409 1.41443 0.99854 0.96944 0.91120 1.25968 0.93264 0.99006 0.99439 1.70166 1.38500 1.30541 1.14471 0.85445 0.77921 0.79330 0.78256 1.20105 1.20512 1.18292 1.89130 1.69907 1.43490 1.28627 0.89126 0.91408 0.93253 0.91317 0.93141 0.94238 0.95071 0.90257 0.82629 0.94719 0.88558 0.90039 0.91938 0.91593 0.87730 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.71 8.94 71.98 0.64 -5.06 16 2 C 0.24 9.91 0.73 30.59 0.02 9.94 16 3 C -0.08 -2.94 1.88 -10.72 -0.02 -2.96 16 4 C -0.10 -3.85 5.06 30.65 0.16 -3.69 16 5 C 0.07 2.01 6.55 86.33 0.57 2.58 16 6 N -0.69 -17.31 6.85 -513.99 -3.52 -20.83 16 7 C 0.06 1.42 6.55 86.32 0.57 1.99 16 8 C -0.10 -2.91 4.91 30.65 0.15 -2.76 16 9 O -0.39 -16.31 9.60 -126.22 -1.21 -17.52 16 10 C 0.03 1.26 7.33 72.64 0.53 1.79 16 11 C 0.19 9.94 3.43 30.50 0.10 10.04 16 12 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 13 C -0.56 -31.44 8.81 25.60 0.23 -31.22 16 14 H 0.07 3.77 7.76 -2.91 -0.02 3.75 16 15 C 0.03 1.47 5.45 84.66 0.46 1.93 16 16 N -0.90 -54.04 13.15 21.45 0.28 -53.76 16 17 Si 0.97 43.49 29.54 68.60 2.03 45.52 16 18 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 21 O -0.39 -20.67 9.59 -126.22 -1.21 -21.88 16 22 H 0.09 2.63 6.60 -2.39 -0.02 2.61 16 23 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.05 2.10 7.73 -2.39 -0.02 2.08 16 27 H 0.04 1.81 7.67 -2.38 -0.02 1.79 16 28 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.35 6.70 8.90 -89.69 -0.80 5.91 16 31 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 2.01 6.68 -2.39 -0.02 1.99 16 34 H 0.06 2.01 7.52 -2.39 -0.02 1.99 16 35 H 0.07 2.78 8.02 -2.38 -0.02 2.76 16 36 H 0.10 4.10 8.14 -2.39 -0.02 4.08 16 37 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -65.61 292.14 0.02 -65.59 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.25 Total: 20.32 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: 3.41 Total: -17.42 kcal Atomic # 7 Polarization: -71.36 SS G_CDS: -3.24 Total: -74.59 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -2.42 Total: -39.41 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -65.61 0.02 -65.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258432058.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.188 kcal (2) G-P(sol) polarization free energy of solvation -65.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds