Wall clock time and date at job start Mon Mar 30 2020 03:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.63008 * 2 1 4 4 C 1.53120 * 109.57370 * 181.21953 * 3 2 1 5 5 C 1.53040 * 109.27503 * 177.59141 * 4 3 2 6 6 N 1.46850 * 109.52419 * 300.82105 * 5 4 3 7 7 C 1.46841 * 111.19924 * 61.73999 * 6 5 4 8 8 C 1.53042 * 109.52629 * 298.26169 * 7 6 5 9 9 O 1.43371 * 109.63537 * 239.60547 * 2 1 3 10 10 C 1.44191 * 107.29148 * 240.94080 * 9 2 1 11 11 C 1.54919 * 103.07431 * 21.43376 * 10 9 2 12 12 H 1.09001 * 110.97850 * 82.58551 * 11 10 9 13 13 C 1.50698 * 110.97676 * 206.32980 * 11 10 9 14 14 H 1.08005 * 120.00048 * 0.02562 * 13 11 10 15 15 C 1.37878 * 120.00220 * 180.02562 * 13 11 10 16 16 N 1.31508 * 120.00164 * 180.02562 * 15 13 11 17 17 Si 1.86801 * 119.99577 * 359.97438 * 15 13 11 18 18 H 1.48495 * 109.47050 * 90.00632 * 17 15 13 19 19 H 1.48501 * 109.46912 * 209.99981 * 17 15 13 20 20 H 1.48497 * 109.47345 * 330.00162 * 17 15 13 21 21 O 1.43757 * 109.51078 * 120.31415 * 2 1 3 22 22 H 1.09000 * 109.47032 * 59.99792 * 1 2 3 23 23 H 1.08999 * 109.47393 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47072 * 300.00207 * 1 2 3 25 25 H 1.09002 * 109.52314 * 61.05865 * 3 2 1 26 26 H 1.09002 * 109.50326 * 297.52512 * 4 3 2 27 27 H 1.08999 * 109.50267 * 57.65168 * 4 3 2 28 28 H 1.09002 * 109.46407 * 180.80522 * 5 4 3 29 29 H 1.08999 * 109.46610 * 60.83611 * 5 4 3 30 30 H 1.00898 * 110.99871 * 185.84610 * 6 5 4 31 31 H 1.08998 * 109.46320 * 178.24106 * 7 6 5 32 32 H 1.08998 * 109.45620 * 58.27242 * 7 6 5 33 33 H 1.09003 * 109.49792 * 299.23877 * 8 7 6 34 34 H 1.08994 * 109.50340 * 179.12119 * 8 7 6 35 35 H 1.08998 * 110.69620 * 139.83052 * 10 9 2 36 36 H 1.08999 * 110.69369 * 263.03924 * 10 9 2 37 37 H 0.97004 * 120.00349 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 6 3.5748 1.4397 -0.0307 5 6 4.0802 2.8830 -0.0912 6 7 3.5493 3.5389 -1.2930 7 6 2.0822 3.5943 -1.2635 8 6 1.5171 2.1722 -1.2379 9 8 2.0117 -0.6832 -1.1648 10 6 2.7855 -1.8118 -0.7102 11 6 2.2599 -2.0403 0.7290 12 1 1.3396 -2.6242 0.7203 13 6 3.3072 -2.7020 1.5871 14 1 4.2718 -2.9485 1.1683 15 6 3.0342 -2.9928 2.9069 16 7 3.9483 -3.5698 3.6559 17 14 1.3662 -2.5658 3.6315 18 1 0.4383 -3.7102 3.4461 19 1 1.5150 -2.2792 5.0810 20 1 0.8195 -1.3687 2.9437 21 8 2.0101 -0.6839 1.1698 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6981 1.9512 0.8990 26 1 3.9565 0.9581 0.8696 27 1 3.9207 0.8959 -0.9097 28 1 5.1697 2.8851 -0.1277 29 1 3.7456 3.4225 0.7948 30 1 3.9438 4.4607 -1.4061 31 1 1.7204 4.1130 -2.1512 32 1 1.7570 4.1303 -0.3719 33 1 1.8307 1.6399 -2.1359 34 1 0.4286 2.2138 -1.2002 35 1 2.5948 -2.6856 -1.3332 36 1 3.8484 -1.5704 -0.6984 37 1 3.7563 -3.7741 4.5845 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258432062.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:09 Heat of formation + Delta-G solvation = -96.434136 kcal Electronic energy + Delta-G solvation = -18893.474880 eV Core-core repulsion = 16056.353262 eV Total energy + Delta-G solvation = -2837.121618 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.00309 -37.81051 -34.10100 -33.33030 -32.31282 -30.65877 -29.68193 -28.17090 -24.89794 -24.07357 -22.62750 -20.98126 -20.46377 -19.13959 -17.24695 -16.55113 -16.04104 -15.46688 -14.74026 -14.43682 -14.14545 -13.76723 -13.57093 -13.47603 -12.92602 -12.79133 -12.54955 -12.23704 -11.98926 -11.76844 -11.53416 -11.41078 -10.91379 -10.89649 -10.79272 -10.30554 -10.14340 -10.08190 -9.77103 -9.60616 -8.97627 -8.71209 -8.54317 -8.36697 -6.23126 -4.33673 3.28539 3.35800 3.56139 4.29807 4.34239 4.40609 4.67346 5.00082 5.08803 5.15480 5.37618 5.46025 5.54690 5.55517 5.70339 5.79522 5.90057 5.91173 5.92662 5.98669 6.01148 6.07447 6.22881 6.30592 6.33669 6.44163 6.57889 6.63163 6.69419 6.86816 7.05517 7.13176 7.43749 7.51011 8.18511 8.28545 8.77006 9.38565 10.86900 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031568 B = 0.008035 C = 0.007675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.768203 B = 3484.039617 C = 3647.379340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.251 3.749 3 C -0.084 4.084 4 C -0.107 4.107 5 C 0.059 3.941 6 N -0.690 5.690 7 C 0.060 3.940 8 C -0.109 4.109 9 O -0.391 6.391 10 C 0.036 3.964 11 C 0.147 3.853 12 H 0.038 0.962 13 C -0.522 4.522 14 H 0.083 0.917 15 C 0.088 3.912 16 N -0.884 5.884 17 Si 0.870 3.130 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.234 1.234 21 O -0.372 6.372 22 H 0.064 0.936 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.026 0.974 30 H 0.336 0.664 31 H 0.070 0.930 32 H 0.025 0.975 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.847 11.879 -7.796 15.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.173 3.827 3 C -0.103 4.103 4 C -0.145 4.145 5 C -0.070 4.070 6 N -0.321 5.321 7 C -0.069 4.069 8 C -0.147 4.147 9 O -0.312 6.312 10 C -0.040 4.040 11 C 0.092 3.908 12 H 0.055 0.945 13 C -0.558 4.558 14 H 0.101 0.899 15 C -0.118 4.118 16 N -0.521 5.521 17 Si 0.696 3.304 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.157 1.157 21 O -0.293 6.293 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.153 0.847 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.797 11.388 -7.993 14.717 hybrid contribution -0.937 0.672 1.295 1.734 sum -5.734 12.060 -6.698 14.940 Atomic orbital electron populations 1.22397 0.95872 1.02562 1.01843 1.23032 0.91461 0.90624 0.77580 1.21401 0.96676 0.94178 0.97999 1.21517 0.94409 0.95013 1.03543 1.21962 0.99285 0.95729 0.89992 1.60280 1.06480 1.24762 1.40557 1.21909 0.87990 0.97290 0.99710 1.21620 0.99147 0.94676 0.99211 1.88714 1.69863 1.42547 1.30117 1.24110 0.95991 0.87623 0.96304 1.21844 0.96229 0.81231 0.91494 0.94480 1.20758 1.00936 1.38147 0.95986 0.89880 1.25017 0.97364 0.92688 0.96704 1.69899 1.34180 1.40210 1.07802 0.86936 0.84305 0.80612 0.78559 1.20712 1.21382 1.15671 1.89578 1.85179 1.24852 1.29718 0.91683 0.92284 0.91652 0.91101 0.90328 0.90789 0.90969 0.95609 0.84702 0.91170 0.95679 0.90260 0.91802 0.90092 0.91302 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 8.81 37.15 0.33 -2.55 16 2 C 0.25 4.87 0.73 -26.73 -0.02 4.85 16 3 C -0.08 -1.41 1.90 -90.49 -0.17 -1.58 16 4 C -0.11 -1.84 5.09 -26.65 -0.14 -1.97 16 5 C 0.06 0.83 6.55 -3.83 -0.03 0.80 16 6 N -0.69 -8.74 6.84 -113.82 -0.78 -9.52 16 7 C 0.06 0.73 6.55 -3.83 -0.03 0.71 16 8 C -0.11 -1.54 4.82 -26.65 -0.13 -1.67 16 9 O -0.39 -7.77 9.46 -59.04 -0.56 -8.33 16 10 C 0.04 0.75 7.51 38.17 0.29 1.03 16 11 C 0.15 3.51 2.62 -26.87 -0.07 3.44 16 12 H 0.04 0.89 7.42 -51.93 -0.39 0.51 16 13 C -0.52 -14.50 9.41 -34.44 -0.32 -14.82 16 14 H 0.08 2.45 8.01 -52.48 -0.42 2.03 16 15 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16 16 N -0.88 -26.53 13.96 55.43 0.77 -25.76 16 17 Si 0.87 21.55 27.08 -169.99 -4.60 16.95 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.23 -5.68 5.72 56.52 0.32 -5.36 16 21 O -0.37 -8.71 7.88 -59.04 -0.47 -9.17 16 22 H 0.06 0.95 6.49 -51.93 -0.34 0.61 16 23 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.08 1.52 7.80 -51.93 -0.41 1.12 16 27 H 0.07 1.37 7.59 -51.93 -0.39 0.97 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.34 3.42 8.90 -39.29 -0.35 3.07 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 1.25 7.67 -51.93 -0.40 0.85 16 34 H 0.06 0.82 6.57 -51.93 -0.34 0.48 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.07 1.45 8.01 -51.93 -0.42 1.04 16 37 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 286.52 15.07 4.32 4.32 Total: -1.00 -30.01 286.52 -7.74 -37.75 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.04 Total: 3.12 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -0.38 Total: -9.35 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: -0.01 Total: -35.28 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -1.02 Total: -17.50 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.60 Total: 16.95 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.01 -7.74 -37.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258432062.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.683 kcal (2) G-P(sol) polarization free energy of solvation -30.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds