Wall clock time and date at job start Mon Mar 30 2020 03:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.63008 * 2 1 4 4 C 1.53120 * 109.57370 * 181.21953 * 3 2 1 5 5 C 1.53040 * 109.27503 * 177.59141 * 4 3 2 6 6 N 1.46850 * 109.52419 * 300.82105 * 5 4 3 7 7 C 1.46841 * 111.19924 * 61.73999 * 6 5 4 8 8 C 1.53042 * 109.52629 * 298.26169 * 7 6 5 9 9 O 1.43371 * 109.63537 * 239.60547 * 2 1 3 10 10 C 1.44191 * 107.29148 * 240.94080 * 9 2 1 11 11 C 1.54919 * 103.07431 * 21.43376 * 10 9 2 12 12 H 1.09001 * 110.97850 * 82.58551 * 11 10 9 13 13 C 1.50698 * 110.97676 * 206.32980 * 11 10 9 14 14 H 1.08005 * 120.00048 * 0.02562 * 13 11 10 15 15 C 1.37878 * 120.00220 * 180.02562 * 13 11 10 16 16 N 1.31508 * 120.00164 * 180.02562 * 15 13 11 17 17 Si 1.86801 * 119.99577 * 359.97438 * 15 13 11 18 18 H 1.48495 * 109.47050 * 90.00632 * 17 15 13 19 19 H 1.48501 * 109.46912 * 209.99981 * 17 15 13 20 20 H 1.48497 * 109.47345 * 330.00162 * 17 15 13 21 21 O 1.43757 * 109.51078 * 120.31415 * 2 1 3 22 22 H 1.09000 * 109.47032 * 59.99792 * 1 2 3 23 23 H 1.08999 * 109.47393 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47072 * 300.00207 * 1 2 3 25 25 H 1.09002 * 109.52314 * 61.05865 * 3 2 1 26 26 H 1.09002 * 109.50326 * 297.52512 * 4 3 2 27 27 H 1.08999 * 109.50267 * 57.65168 * 4 3 2 28 28 H 1.09002 * 109.46407 * 180.80522 * 5 4 3 29 29 H 1.08999 * 109.46610 * 60.83611 * 5 4 3 30 30 H 1.00898 * 110.99871 * 185.84610 * 6 5 4 31 31 H 1.08998 * 109.46320 * 178.24106 * 7 6 5 32 32 H 1.08998 * 109.45620 * 58.27242 * 7 6 5 33 33 H 1.09003 * 109.49792 * 299.23877 * 8 7 6 34 34 H 1.08994 * 109.50340 * 179.12119 * 8 7 6 35 35 H 1.08998 * 110.69620 * 139.83052 * 10 9 2 36 36 H 1.08999 * 110.69369 * 263.03924 * 10 9 2 37 37 H 0.97004 * 120.00349 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 6 3.5748 1.4397 -0.0307 5 6 4.0802 2.8830 -0.0912 6 7 3.5493 3.5389 -1.2930 7 6 2.0822 3.5943 -1.2635 8 6 1.5171 2.1722 -1.2379 9 8 2.0117 -0.6832 -1.1648 10 6 2.7855 -1.8118 -0.7102 11 6 2.2599 -2.0403 0.7290 12 1 1.3396 -2.6242 0.7203 13 6 3.3072 -2.7020 1.5871 14 1 4.2718 -2.9485 1.1683 15 6 3.0342 -2.9928 2.9069 16 7 3.9483 -3.5698 3.6559 17 14 1.3662 -2.5658 3.6315 18 1 0.4383 -3.7102 3.4461 19 1 1.5150 -2.2792 5.0810 20 1 0.8195 -1.3687 2.9437 21 8 2.0101 -0.6839 1.1698 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6981 1.9512 0.8990 26 1 3.9565 0.9581 0.8696 27 1 3.9207 0.8959 -0.9097 28 1 5.1697 2.8851 -0.1277 29 1 3.7456 3.4225 0.7948 30 1 3.9438 4.4607 -1.4061 31 1 1.7204 4.1130 -2.1512 32 1 1.7570 4.1303 -0.3719 33 1 1.8307 1.6399 -2.1359 34 1 0.4286 2.2138 -1.2002 35 1 2.5948 -2.6856 -1.3332 36 1 3.8484 -1.5704 -0.6984 37 1 3.7563 -3.7741 4.5845 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258432062.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:09 Heat of formation + Delta-G solvation = -117.955858 kcal Electronic energy + Delta-G solvation = -18894.408132 eV Core-core repulsion = 16056.353262 eV Total energy + Delta-G solvation = -2838.054870 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.57420 -39.05725 -35.86804 -34.99324 -34.09483 -31.82975 -31.23310 -29.77609 -26.81859 -25.34039 -23.78156 -22.84872 -21.82407 -20.46954 -19.29836 -17.79064 -17.70969 -17.11032 -16.45136 -15.79574 -15.53883 -15.34844 -14.92264 -14.79832 -14.66030 -14.43745 -13.93538 -13.83708 -13.30457 -13.25035 -13.18867 -12.85039 -12.62246 -12.30377 -12.15564 -12.08019 -11.78086 -11.60477 -11.43602 -11.17392 -10.87849 -10.71886 -10.16462 -9.36582 -8.42814 -6.58010 1.31693 1.35048 1.59167 2.33671 2.64963 2.96254 3.32853 3.36962 3.73736 3.86727 4.05157 4.07430 4.20096 4.30737 4.33233 4.40591 4.51609 4.57048 4.62128 4.69288 4.70706 4.78208 4.89820 4.94087 5.01390 5.08092 5.11395 5.21313 5.30962 5.36473 5.50864 5.53013 6.08047 6.08846 6.45167 6.56857 6.58915 7.17774 8.70852 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031568 B = 0.008035 C = 0.007675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.768203 B = 3484.039617 C = 3647.379340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.237 3.763 3 C -0.083 4.083 4 C -0.104 4.104 5 C 0.067 3.933 6 N -0.696 5.696 7 C 0.061 3.939 8 C -0.102 4.102 9 O -0.387 6.387 10 C 0.044 3.956 11 C 0.149 3.851 12 H 0.043 0.957 13 C -0.530 4.530 14 H 0.048 0.952 15 C 0.034 3.966 16 N -0.930 5.930 17 Si 0.933 3.067 18 H -0.268 1.268 19 H -0.287 1.287 20 H -0.226 1.226 21 O -0.393 6.393 22 H 0.092 0.908 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.032 0.968 30 H 0.354 0.646 31 H 0.094 0.906 32 H 0.035 0.965 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.056 0.944 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.990 13.947 -8.781 17.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.160 3.840 3 C -0.102 4.102 4 C -0.142 4.142 5 C -0.063 4.063 6 N -0.329 5.329 7 C -0.068 4.068 8 C -0.140 4.140 9 O -0.309 6.309 10 C -0.033 4.033 11 C 0.093 3.907 12 H 0.061 0.939 13 C -0.567 4.567 14 H 0.067 0.933 15 C -0.167 4.167 16 N -0.568 5.568 17 Si 0.756 3.244 18 H -0.194 1.194 19 H -0.213 1.213 20 H -0.148 1.148 21 O -0.315 6.315 22 H 0.111 0.889 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.050 0.950 30 H 0.173 0.827 31 H 0.113 0.887 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.074 0.926 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.940 13.475 -9.004 17.630 hybrid contribution -0.194 0.049 1.532 1.545 sum -7.135 13.524 -7.471 17.019 Atomic orbital electron populations 1.22397 0.93533 1.02785 1.03683 1.23539 0.93213 0.91331 0.75913 1.21446 0.96178 0.92946 0.99663 1.21409 0.95084 0.96884 1.00844 1.21814 0.99716 0.93696 0.91049 1.60210 1.07152 1.26010 1.39575 1.21951 0.87416 0.96031 1.01366 1.21588 1.00354 0.95417 0.96645 1.88707 1.69732 1.42170 1.30270 1.23974 0.95417 0.88787 0.95095 1.21645 0.95283 0.81500 0.92241 0.93927 1.20954 1.00612 1.38520 0.96639 0.93347 1.25865 1.01051 0.92588 0.97163 1.70017 1.36378 1.42056 1.08362 0.85951 0.79955 0.80912 0.77550 1.19365 1.21329 1.14803 1.89484 1.85814 1.24422 1.31827 0.88937 0.92931 0.90715 0.90913 0.93738 0.92736 0.90311 0.94959 0.82705 0.88732 0.94707 0.91851 0.89822 0.87841 0.92568 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.15 8.81 71.98 0.63 -4.52 16 2 C 0.24 8.82 0.73 30.59 0.02 8.84 16 3 C -0.08 -2.67 1.90 -10.71 -0.02 -2.69 16 4 C -0.10 -3.56 5.09 30.65 0.16 -3.40 16 5 C 0.07 1.76 6.55 86.33 0.57 2.32 16 6 N -0.70 -15.71 6.84 -514.00 -3.52 -19.23 16 7 C 0.06 1.26 6.55 86.33 0.57 1.83 16 8 C -0.10 -2.59 4.82 30.65 0.15 -2.44 16 9 O -0.39 -14.93 9.46 -126.22 -1.19 -16.13 16 10 C 0.04 1.81 7.51 72.64 0.55 2.36 16 11 C 0.15 7.11 2.62 30.50 0.08 7.19 16 12 H 0.04 2.00 7.42 -2.39 -0.02 1.99 16 13 C -0.53 -30.37 9.41 25.60 0.24 -30.13 16 14 H 0.05 3.02 8.01 -2.91 -0.02 2.99 16 15 C 0.03 2.00 5.47 84.66 0.46 2.47 16 16 N -0.93 -57.40 13.96 21.45 0.30 -57.10 16 17 Si 0.93 44.65 27.08 68.60 1.86 46.50 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 20 H -0.23 -10.39 5.72 99.48 0.57 -9.82 16 21 O -0.39 -18.23 7.88 -126.22 -0.99 -19.23 16 22 H 0.09 2.33 6.49 -2.39 -0.02 2.31 16 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 25 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.04 1.78 7.80 -2.39 -0.02 1.77 16 27 H 0.05 2.04 7.59 -2.39 -0.02 2.02 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.35 6.04 8.90 -89.70 -0.80 5.24 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 1.83 7.67 -2.39 -0.02 1.81 16 34 H 0.08 1.79 6.57 -2.39 -0.02 1.77 16 35 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 36 H 0.06 2.45 8.01 -2.39 -0.02 2.43 16 37 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 Total: -1.00 -65.58 286.52 -0.04 -65.62 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.11 Total: 17.74 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 3.40 Total: -18.18 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -3.22 Total: -76.33 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -2.19 Total: -35.36 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.86 Total: 46.50 kcal Total: -65.58 -0.04 -65.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258432062.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.340 kcal (2) G-P(sol) polarization free energy of solvation -65.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds