Wall clock time and date at job start Mon Mar 30 2020 03:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.62738 * 2 1 4 4 C 1.53123 * 109.52445 * 63.93476 * 3 2 1 5 5 C 1.53039 * 109.31189 * 177.58234 * 4 3 2 6 6 N 1.46856 * 109.51787 * 300.79882 * 5 4 3 7 7 C 1.46846 * 111.19871 * 61.74404 * 6 5 4 8 8 C 1.53030 * 109.52435 * 298.25760 * 7 6 5 9 9 O 1.43370 * 109.62883 * 120.38901 * 2 1 3 10 10 C 1.44189 * 107.28994 * 119.06395 * 9 2 1 11 11 C 1.54919 * 103.07552 * 338.56385 * 10 9 2 12 12 H 1.08998 * 110.97926 * 277.45593 * 11 10 9 13 13 C 1.50698 * 110.97750 * 153.70493 * 11 10 9 14 14 H 1.07998 * 119.99860 * 0.02562 * 13 11 10 15 15 C 1.37881 * 119.99806 * 179.97438 * 13 11 10 16 16 N 1.31516 * 120.00362 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99811 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47150 * 90.00327 * 17 15 13 19 19 H 1.48503 * 109.46748 * 210.00407 * 17 15 13 20 20 H 1.48500 * 109.47201 * 330.00092 * 17 15 13 21 21 O 1.43747 * 109.51188 * 239.68054 * 2 1 3 22 22 H 1.09008 * 109.46827 * 60.00452 * 1 2 3 23 23 H 1.08998 * 109.46913 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47347 * 300.00693 * 1 2 3 25 25 H 1.08997 * 109.57360 * 303.77609 * 3 2 1 26 26 H 1.09002 * 109.50371 * 57.61784 * 4 3 2 27 27 H 1.09003 * 109.50070 * 297.53944 * 4 3 2 28 28 H 1.09000 * 109.46148 * 60.81334 * 5 4 3 29 29 H 1.09002 * 109.46208 * 180.79044 * 5 4 3 30 30 H 1.00895 * 111.00317 * 297.64741 * 6 5 4 31 31 H 1.09004 * 109.46012 * 58.27074 * 7 6 5 32 32 H 1.08994 * 109.46057 * 178.23653 * 7 6 5 33 33 H 1.08997 * 109.50569 * 179.12357 * 8 7 6 34 34 H 1.09007 * 109.50504 * 299.19535 * 8 7 6 35 35 H 1.08996 * 110.69942 * 96.95708 * 10 9 2 36 36 H 1.09003 * 110.69900 * 220.16857 * 10 9 2 37 37 H 0.96991 * 119.99964 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 6 1.6186 2.1361 1.2964 5 6 2.1859 3.5573 1.3185 6 7 3.6508 3.5022 1.2303 7 6 4.0841 2.8819 -0.0282 8 6 3.5733 1.4407 -0.0906 9 8 2.0117 -0.6831 1.1649 10 6 2.7855 -1.8117 0.7105 11 6 2.2601 -2.0403 -0.7288 12 1 1.3394 -2.6236 -0.7201 13 6 3.3072 -2.7029 -1.5865 14 1 4.2711 -2.9505 -1.1672 15 6 3.0341 -2.9939 -2.9063 16 7 1.8601 -2.6928 -3.4168 17 14 4.3318 -3.8158 -3.9693 18 1 4.1889 -5.2908 -3.8732 19 1 4.1555 -3.3923 -5.3817 20 1 5.6826 -3.4175 -3.4981 21 8 2.0102 -0.6840 -1.1696 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.6288 1.9768 -0.8536 26 1 2.0013 1.5781 2.1510 27 1 0.5305 2.1778 1.3468 28 1 1.7920 4.1188 0.4714 29 1 1.8963 4.0496 2.2468 30 1 4.0430 3.0197 2.0249 31 1 3.6812 3.4467 -0.8690 32 1 5.1729 2.8839 -0.0781 33 1 3.8818 0.9856 -1.0317 34 1 3.9874 0.8715 0.7418 35 1 3.8484 -1.5703 0.6987 36 1 2.5948 -2.6856 1.3335 37 1 1.6682 -2.8972 -4.3454 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258432067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:13 Heat of formation + Delta-G solvation = -104.650300 kcal Electronic energy + Delta-G solvation = -18828.453916 eV Core-core repulsion = 15990.976018 eV Total energy + Delta-G solvation = -2837.477898 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.87633 -37.83646 -33.90449 -33.16501 -32.12173 -30.60454 -29.31312 -27.87223 -24.79445 -23.81314 -22.53206 -21.17689 -20.68967 -19.37400 -16.98506 -16.10830 -15.71908 -15.07520 -14.71333 -14.42218 -14.28082 -13.94871 -13.54447 -13.19828 -12.63220 -12.49368 -12.27567 -12.10768 -11.85880 -11.61886 -11.41278 -11.15928 -11.06517 -10.96510 -10.84741 -10.57393 -10.25456 -10.10143 -10.01168 -9.34086 -8.95937 -8.75267 -8.36295 -8.08236 -6.18398 -4.33083 3.22260 3.29524 3.32665 4.28346 4.45392 4.50927 4.82476 5.04845 5.14962 5.26245 5.40206 5.53245 5.64768 5.73405 5.76499 5.87340 5.99039 6.04198 6.08636 6.11924 6.16154 6.18977 6.30888 6.34586 6.41661 6.61858 6.66209 6.73667 6.75352 6.95402 7.18734 7.36232 7.50101 7.72159 8.05682 8.43808 8.77073 9.39091 10.89681 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031617 B = 0.007458 C = 0.006813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.391611 B = 3753.681733 C = 4108.640262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.249 3.751 3 C -0.080 4.080 4 C -0.147 4.147 5 C 0.058 3.942 6 N -0.689 5.689 7 C 0.057 3.943 8 C -0.144 4.144 9 O -0.397 6.397 10 C 0.024 3.976 11 C 0.186 3.814 12 H 0.040 0.960 13 C -0.533 4.533 14 H 0.067 0.933 15 C 0.079 3.921 16 N -0.863 5.863 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.271 1.271 21 O -0.354 6.354 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.338 0.662 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.160 7.998 7.302 10.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.170 3.830 3 C -0.099 4.099 4 C -0.186 4.186 5 C -0.072 4.072 6 N -0.317 5.317 7 C -0.073 4.073 8 C -0.183 4.183 9 O -0.319 6.319 10 C -0.053 4.053 11 C 0.131 3.869 12 H 0.058 0.942 13 C -0.570 4.570 14 H 0.085 0.915 15 C -0.128 4.128 16 N -0.498 5.498 17 Si 0.725 3.275 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.196 1.196 21 O -0.274 6.274 22 H 0.084 0.916 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.155 0.845 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.092 8.812 6.887 11.184 hybrid contribution 0.269 -1.625 -0.534 1.732 sum 0.360 7.186 6.353 9.599 Atomic orbital electron populations 1.22333 0.95922 1.02581 1.01373 1.23052 0.91551 0.90487 0.77882 1.21375 0.96318 0.94662 0.97582 1.22250 1.01096 0.96874 0.98419 1.22009 0.87839 0.95532 1.01810 1.60746 1.08856 1.57146 1.04955 1.22036 0.99834 0.93190 0.92222 1.22148 0.95195 0.97255 1.03743 1.88674 1.69870 1.42615 1.30743 1.24293 0.95473 0.87536 0.97967 1.21396 0.96096 0.81177 0.88213 0.94196 1.20850 1.00295 1.39535 0.96343 0.91464 1.25085 0.95421 0.94288 0.97990 1.70015 1.21108 1.44322 1.14368 0.86511 0.81867 0.79531 0.79616 1.20325 1.20922 1.19567 1.89565 1.84762 1.24555 1.28558 0.91610 0.92205 0.92393 0.90764 0.91201 0.91696 0.91286 0.91181 0.84508 0.91264 0.91067 0.90128 0.91985 0.92147 0.90598 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 8.92 37.16 0.33 -2.75 16 2 C 0.25 5.12 0.73 -26.73 -0.02 5.10 16 3 C -0.08 -1.40 1.89 -90.45 -0.17 -1.57 16 4 C -0.15 -2.12 4.89 -26.65 -0.13 -2.25 16 5 C 0.06 0.73 6.56 -3.83 -0.03 0.70 16 6 N -0.69 -9.02 6.87 -113.81 -0.78 -9.80 16 7 C 0.06 0.80 6.55 -3.84 -0.03 0.78 16 8 C -0.14 -2.48 5.05 -26.61 -0.13 -2.61 16 9 O -0.40 -8.25 9.46 -59.04 -0.56 -8.81 16 10 C 0.02 0.51 7.51 38.17 0.29 0.80 16 11 C 0.19 4.76 3.21 -26.87 -0.09 4.67 16 12 H 0.04 1.11 8.14 -51.93 -0.42 0.68 16 13 C -0.53 -14.56 8.83 -34.44 -0.30 -14.87 16 14 H 0.07 1.77 7.76 -52.49 -0.41 1.36 16 15 C 0.08 2.18 5.46 -17.82 -0.10 2.08 16 16 N -0.86 -25.01 13.21 55.43 0.73 -24.28 16 17 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 O -0.35 -8.98 9.86 -59.04 -0.58 -9.56 16 22 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 23 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.06 0.93 6.61 -51.93 -0.34 0.59 16 25 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.07 1.08 7.53 -51.93 -0.39 0.69 16 27 H 0.06 0.89 6.68 -51.93 -0.35 0.54 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.34 4.18 8.86 -39.29 -0.35 3.83 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.60 7.69 -51.93 -0.40 1.20 16 34 H 0.06 1.11 7.73 -51.92 -0.40 0.71 16 35 H 0.06 1.29 8.01 -51.93 -0.42 0.87 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 292.31 15.07 4.40 4.40 Total: -1.00 -29.11 292.31 -8.17 -37.28 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.99 Total: 4.86 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -0.37 Total: -9.93 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: -0.05 Total: -34.08 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -1.14 Total: -18.37 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.11 -8.17 -37.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258432067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.371 kcal (2) G-P(sol) polarization free energy of solvation -29.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds