Wall clock time and date at job start Mon Mar 30 2020 03:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.62738 * 2 1 4 4 C 1.53123 * 109.52445 * 63.93476 * 3 2 1 5 5 C 1.53039 * 109.31189 * 177.58234 * 4 3 2 6 6 N 1.46856 * 109.51787 * 300.79882 * 5 4 3 7 7 C 1.46846 * 111.19871 * 61.74404 * 6 5 4 8 8 C 1.53030 * 109.52435 * 298.25760 * 7 6 5 9 9 O 1.43370 * 109.62883 * 120.38901 * 2 1 3 10 10 C 1.44189 * 107.28994 * 119.06395 * 9 2 1 11 11 C 1.54919 * 103.07552 * 338.56385 * 10 9 2 12 12 H 1.08998 * 110.97926 * 277.45593 * 11 10 9 13 13 C 1.50698 * 110.97750 * 153.70493 * 11 10 9 14 14 H 1.07998 * 119.99860 * 0.02562 * 13 11 10 15 15 C 1.37881 * 119.99806 * 179.97438 * 13 11 10 16 16 N 1.31516 * 120.00362 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99811 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47150 * 90.00327 * 17 15 13 19 19 H 1.48503 * 109.46748 * 210.00407 * 17 15 13 20 20 H 1.48500 * 109.47201 * 330.00092 * 17 15 13 21 21 O 1.43747 * 109.51188 * 239.68054 * 2 1 3 22 22 H 1.09008 * 109.46827 * 60.00452 * 1 2 3 23 23 H 1.08998 * 109.46913 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47347 * 300.00693 * 1 2 3 25 25 H 1.08997 * 109.57360 * 303.77609 * 3 2 1 26 26 H 1.09002 * 109.50371 * 57.61784 * 4 3 2 27 27 H 1.09003 * 109.50070 * 297.53944 * 4 3 2 28 28 H 1.09000 * 109.46148 * 60.81334 * 5 4 3 29 29 H 1.09002 * 109.46208 * 180.79044 * 5 4 3 30 30 H 1.00895 * 111.00317 * 297.64741 * 6 5 4 31 31 H 1.09004 * 109.46012 * 58.27074 * 7 6 5 32 32 H 1.08994 * 109.46057 * 178.23653 * 7 6 5 33 33 H 1.08997 * 109.50569 * 179.12357 * 8 7 6 34 34 H 1.09007 * 109.50504 * 299.19535 * 8 7 6 35 35 H 1.08996 * 110.69942 * 96.95708 * 10 9 2 36 36 H 1.09003 * 110.69900 * 220.16857 * 10 9 2 37 37 H 0.96991 * 119.99964 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 6 1.6186 2.1361 1.2964 5 6 2.1859 3.5573 1.3185 6 7 3.6508 3.5022 1.2303 7 6 4.0841 2.8819 -0.0282 8 6 3.5733 1.4407 -0.0906 9 8 2.0117 -0.6831 1.1649 10 6 2.7855 -1.8117 0.7105 11 6 2.2601 -2.0403 -0.7288 12 1 1.3394 -2.6236 -0.7201 13 6 3.3072 -2.7029 -1.5865 14 1 4.2711 -2.9505 -1.1672 15 6 3.0341 -2.9939 -2.9063 16 7 1.8601 -2.6928 -3.4168 17 14 4.3318 -3.8158 -3.9693 18 1 4.1889 -5.2908 -3.8732 19 1 4.1555 -3.3923 -5.3817 20 1 5.6826 -3.4175 -3.4981 21 8 2.0102 -0.6840 -1.1696 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.6288 1.9768 -0.8536 26 1 2.0013 1.5781 2.1510 27 1 0.5305 2.1778 1.3468 28 1 1.7920 4.1188 0.4714 29 1 1.8963 4.0496 2.2468 30 1 4.0430 3.0197 2.0249 31 1 3.6812 3.4467 -0.8690 32 1 5.1729 2.8839 -0.0781 33 1 3.8818 0.9856 -1.0317 34 1 3.9874 0.8715 0.7418 35 1 3.8484 -1.5703 0.6987 36 1 2.5948 -2.6856 1.3335 37 1 1.6682 -2.8972 -4.3454 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258432067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:12 Heat of formation + Delta-G solvation = -124.795275 kcal Electronic energy + Delta-G solvation = -18829.327467 eV Core-core repulsion = 15990.976018 eV Total energy + Delta-G solvation = -2838.351449 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.50886 -39.16971 -35.77178 -34.91810 -33.83975 -31.81089 -30.89378 -29.62798 -26.75479 -25.13634 -23.75666 -23.05324 -22.04905 -20.83483 -18.99022 -17.78350 -17.25972 -16.68833 -16.53176 -15.88537 -15.57632 -15.26569 -15.20598 -14.76218 -14.26805 -14.10362 -13.86293 -13.66746 -13.24056 -13.15297 -12.92536 -12.83603 -12.71119 -12.57588 -12.34718 -12.13402 -12.08947 -11.49778 -11.37861 -11.14280 -10.86859 -10.63234 -10.19543 -9.27395 -8.27924 -6.50213 1.38615 1.40177 1.51231 2.33741 2.74988 3.02226 3.35086 3.53138 3.71688 3.94808 4.00825 4.20469 4.21291 4.32465 4.41460 4.45053 4.51090 4.54075 4.55238 4.64639 4.76714 4.87318 4.94861 5.00414 5.05764 5.10249 5.16276 5.21274 5.31759 5.39658 5.47588 5.60369 6.01193 6.08384 6.49141 6.52738 6.75627 7.26570 8.81228 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.031617 B = 0.007458 C = 0.006813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.391611 B = 3753.681733 C = 4108.640262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.236 3.764 3 C -0.079 4.079 4 C -0.137 4.137 5 C 0.062 3.938 6 N -0.685 5.685 7 C 0.066 3.934 8 C -0.137 4.137 9 O -0.393 6.393 10 C 0.035 3.965 11 C 0.181 3.819 12 H 0.008 0.992 13 C -0.553 4.553 14 H 0.072 0.928 15 C 0.026 3.974 16 N -0.902 5.902 17 Si 0.969 3.031 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.263 1.263 21 O -0.383 6.383 22 H 0.067 0.933 23 H 0.040 0.960 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.344 0.656 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.873 9.137 8.315 12.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.158 3.842 3 C -0.098 4.098 4 C -0.176 4.176 5 C -0.068 4.068 6 N -0.313 5.313 7 C -0.064 4.064 8 C -0.176 4.176 9 O -0.314 6.314 10 C -0.041 4.041 11 C 0.126 3.874 12 H 0.025 0.975 13 C -0.590 4.590 14 H 0.090 0.910 15 C -0.177 4.177 16 N -0.539 5.539 17 Si 0.792 3.208 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.187 1.187 21 O -0.305 6.305 22 H 0.086 0.914 23 H 0.059 0.941 24 H 0.107 0.893 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.162 0.838 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.807 9.956 7.927 12.752 hybrid contribution -0.008 -1.957 -0.803 2.116 sum 0.798 7.998 7.124 10.740 Atomic orbital electron populations 1.22313 0.94672 1.01862 1.02982 1.23501 0.92654 0.91668 0.76341 1.21392 0.96390 0.92662 0.99359 1.22199 1.01899 0.97638 0.95880 1.22068 0.87189 0.94212 1.03328 1.60762 1.09357 1.56606 1.04570 1.21947 1.00476 0.90904 0.93031 1.22064 0.95154 0.99121 1.01300 1.88651 1.69863 1.42313 1.30610 1.24150 0.95489 0.88540 0.95904 1.21234 0.94567 0.81197 0.90436 0.97468 1.21238 1.00785 1.39895 0.97052 0.90966 1.25989 0.97513 0.94835 0.99388 1.70148 1.23193 1.45836 1.14744 0.85412 0.79134 0.78830 0.77417 1.19116 1.20784 1.18733 1.89491 1.85359 1.24469 1.31158 0.91435 0.94112 0.89268 0.91231 0.91901 0.90508 0.90932 0.88649 0.83797 0.91157 0.89938 0.93730 0.92928 0.91890 0.88592 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.97 8.92 71.98 0.64 -5.33 16 2 C 0.24 9.73 0.73 30.59 0.02 9.75 16 3 C -0.08 -2.69 1.89 -10.69 -0.02 -2.71 16 4 C -0.14 -3.60 4.89 30.65 0.15 -3.46 16 5 C 0.06 1.34 6.56 86.32 0.57 1.91 16 6 N -0.68 -15.99 6.87 -513.99 -3.53 -19.52 16 7 C 0.07 1.76 6.55 86.32 0.57 2.33 16 8 C -0.14 -4.66 5.05 30.67 0.15 -4.51 16 9 O -0.39 -16.09 9.46 -126.22 -1.19 -17.29 16 10 C 0.04 1.53 7.51 72.64 0.55 2.08 16 11 C 0.18 9.53 3.21 30.50 0.10 9.63 16 12 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 13 C -0.55 -30.78 8.83 25.60 0.23 -30.56 16 14 H 0.07 3.83 7.76 -2.91 -0.02 3.81 16 15 C 0.03 1.43 5.46 84.66 0.46 1.89 16 16 N -0.90 -53.79 13.21 21.45 0.28 -53.50 16 17 Si 0.97 43.13 29.54 68.60 2.03 45.15 16 18 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 21 O -0.38 -20.08 9.86 -126.22 -1.24 -21.33 16 22 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 23 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.09 2.70 6.61 -2.39 -0.02 2.69 16 25 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.06 1.77 7.53 -2.39 -0.02 1.75 16 27 H 0.08 1.85 6.68 -2.39 -0.02 1.83 16 28 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.34 7.51 8.86 -89.70 -0.79 6.72 16 31 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.04 1.82 7.69 -2.39 -0.02 1.80 16 34 H 0.05 1.86 7.73 -2.38 -0.02 1.84 16 35 H 0.06 2.68 8.01 -2.39 -0.02 2.66 16 36 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 37 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -63.47 292.31 0.01 -63.47 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.25 Total: 21.99 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 3.41 Total: -18.97 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: -3.25 Total: -73.02 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -2.44 Total: -38.61 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -63.47 0.01 -63.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258432067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.330 kcal (2) G-P(sol) polarization free energy of solvation -63.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds