Wall clock time and date at job start Mon Mar 30 2020 03:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47446 * 110.99808 * 2 1 4 4 C 1.54322 * 107.23461 * 236.74011 * 3 2 1 5 5 C 1.55144 * 103.01448 * 337.71939 * 4 3 2 6 6 H 1.09000 * 110.98871 * 277.51893 * 5 4 3 7 7 C 1.52999 * 110.99099 * 153.74666 * 5 4 3 8 8 C 1.53004 * 109.62706 * 304.20505 * 7 5 4 9 9 O 1.43372 * 109.63334 * 64.59139 * 7 5 4 10 10 C 1.44191 * 107.28450 * 120.40250 * 9 7 5 11 11 C 1.54907 * 103.07929 * 21.44026 * 10 9 7 12 12 H 1.08998 * 110.98573 * 82.58144 * 11 10 9 13 13 C 1.50702 * 110.97635 * 206.32841 * 11 10 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 11 10 15 15 C 1.37884 * 119.99942 * 179.71847 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 O 1.43752 * 109.51204 * 183.88624 * 7 5 4 22 22 C 1.47885 * 111.01868 * 239.12429 * 2 1 3 23 23 H 1.09001 * 109.47215 * 60.12711 * 1 2 3 24 24 H 1.08994 * 109.47206 * 180.12707 * 1 2 3 25 25 H 1.08998 * 109.47048 * 300.12928 * 1 2 3 26 26 H 1.09005 * 109.88749 * 117.33743 * 3 2 1 27 27 H 1.08995 * 109.89229 * 356.14793 * 3 2 1 28 28 H 1.08996 * 110.70889 * 219.33692 * 4 3 2 29 29 H 1.08999 * 110.85731 * 96.16455 * 4 3 2 30 30 H 1.08995 * 109.47679 * 179.69566 * 8 7 5 31 31 H 1.09013 * 109.46665 * 299.69097 * 8 7 5 32 32 H 1.08995 * 109.47211 * 59.68640 * 8 7 5 33 33 H 1.09003 * 110.69635 * 263.03523 * 10 9 7 34 34 H 1.09004 * 110.69318 * 139.83749 * 10 9 7 35 35 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 36 36 H 1.08996 * 110.35478 * 27.51635 * 22 2 1 37 37 H 1.09005 * 110.40652 * 265.16314 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3765 0.0000 4 6 2.9159 1.5137 -1.2325 5 6 3.3047 0.0444 -1.5437 6 1 4.1306 -0.2830 -0.9123 7 6 3.6484 -0.1297 -3.0244 8 6 2.4752 0.3462 -3.8837 9 8 4.8186 0.6360 -3.3406 10 6 5.8148 -0.2856 -3.8279 11 6 4.9727 -1.5031 -4.2841 12 1 4.5705 -1.3466 -5.2850 13 6 5.7828 -2.7725 -4.2237 14 1 6.8103 -2.7421 -3.8923 15 6 5.2104 -3.9735 -4.5855 16 7 3.9591 -4.0106 -4.9886 17 14 6.2122 -5.5479 -4.5033 18 1 7.5822 -5.2383 -4.0212 19 1 5.5619 -6.5002 -3.5674 20 1 6.2888 -6.1572 -5.8554 21 8 3.9147 -1.5160 -3.2957 22 6 1.9994 -0.7084 -1.1848 23 1 -0.3634 0.5119 -0.8911 24 1 -0.3633 -1.0276 0.0023 25 1 -0.3633 0.5158 0.8888 26 1 2.5697 1.5540 0.9106 27 1 1.1755 2.0892 -0.0689 28 1 3.8000 2.1034 -0.9905 29 1 2.3771 1.9556 -2.0707 30 1 2.7247 0.2261 -4.9379 31 1 1.5902 -0.2459 -3.6501 32 1 2.2748 1.3970 -3.6751 33 1 6.5007 -0.5689 -3.0295 34 1 6.3581 0.1441 -4.6695 35 1 3.5565 -4.8555 -5.2435 36 1 1.2894 -0.6516 -2.0098 37 1 2.2161 -1.7484 -0.9404 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258667412.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:49 Heat of formation + Delta-G solvation = -83.298766 kcal Electronic energy + Delta-G solvation = -18614.314251 eV Core-core repulsion = 15777.762225 eV Total energy + Delta-G solvation = -2836.552026 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.84854 -38.15384 -33.91442 -33.22777 -32.22364 -29.99435 -28.30002 -27.76508 -25.43581 -24.70579 -22.39569 -21.34458 -20.45593 -18.94452 -16.96847 -16.13514 -15.81442 -15.43801 -14.93149 -14.56138 -13.96874 -13.79017 -13.52229 -13.38295 -12.85602 -12.66600 -12.34902 -11.97828 -11.62117 -11.49988 -11.29262 -11.21916 -11.14582 -10.95730 -10.90329 -10.64001 -10.55558 -10.25486 -10.08052 -9.32485 -8.92132 -8.72755 -8.31074 -8.12094 -6.16889 -4.31150 3.23717 3.32019 3.35667 4.16159 4.29144 4.39905 4.86378 4.89587 5.10695 5.20451 5.42854 5.47520 5.51701 5.58737 5.65613 5.73965 5.84011 5.91130 5.96054 6.06700 6.13352 6.15967 6.20595 6.27745 6.38746 6.46073 6.55002 6.64657 6.75193 6.95097 7.11769 7.22784 7.37183 7.74244 8.06794 8.42900 8.78731 9.40959 10.91244 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030721 B = 0.007093 C = 0.006369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.200702 B = 3946.386967 C = 4394.960596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.538 5.538 3 C 0.042 3.958 4 C -0.134 4.134 5 C -0.091 4.091 6 H 0.087 0.913 7 C 0.255 3.745 8 C -0.168 4.168 9 O -0.398 6.398 10 C 0.023 3.977 11 C 0.184 3.816 12 H 0.042 0.958 13 C -0.533 4.533 14 H 0.069 0.931 15 C 0.079 3.921 16 N -0.862 5.862 17 Si 0.899 3.101 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.281 1.281 21 O -0.353 6.353 22 C 0.053 3.947 23 H 0.024 0.976 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.264 0.736 36 H 0.054 0.946 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.490 8.726 5.666 11.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.262 5.262 3 C -0.086 4.086 4 C -0.172 4.172 5 C -0.111 4.111 6 H 0.105 0.895 7 C 0.176 3.824 8 C -0.226 4.226 9 O -0.320 6.320 10 C -0.053 4.053 11 C 0.129 3.871 12 H 0.060 0.940 13 C -0.570 4.570 14 H 0.087 0.913 15 C -0.128 4.128 16 N -0.498 5.498 17 Si 0.725 3.275 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.207 1.207 21 O -0.274 6.274 22 C -0.074 4.074 23 H 0.043 0.957 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.587 8.391 6.177 11.384 hybrid contribution 0.169 -0.494 -0.806 0.961 sum -4.418 7.897 5.370 10.523 Atomic orbital electron populations 1.22508 0.88164 1.01970 1.00074 1.63601 1.07527 1.14014 1.41097 1.22837 0.97705 0.89447 0.98613 1.22853 0.99743 0.97007 0.97626 1.22482 0.98158 0.94593 0.95820 0.89490 1.22894 0.86427 0.81508 0.91583 1.22434 0.98679 1.00567 1.00903 1.88691 1.24307 1.33641 1.85368 1.24323 0.92018 0.90846 0.98149 1.21445 0.83278 0.93260 0.89089 0.94023 1.20911 0.97443 0.91291 1.47322 0.91333 1.25088 0.94823 0.99477 0.93421 1.70028 1.12009 1.26478 1.41276 0.86443 0.80366 0.82826 0.77822 1.19438 1.20659 1.20732 1.89589 1.57639 1.18558 1.61569 1.23107 0.94864 0.99002 0.90451 0.95699 0.91433 0.91791 0.90784 0.93091 0.90660 0.90983 0.92005 0.91294 0.92275 0.91948 0.90362 0.92656 0.92769 0.89517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.12 60.06 0.55 0.81 16 2 N -0.54 -8.08 5.44 -239.49 -1.30 -9.39 16 3 C 0.04 0.56 6.90 -2.83 -0.02 0.54 16 4 C -0.13 -1.99 6.13 -24.90 -0.15 -2.15 16 5 C -0.09 -1.66 2.87 -88.48 -0.25 -1.91 16 6 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 7 C 0.25 5.31 0.87 -26.73 -0.02 5.29 16 8 C -0.17 -3.13 8.55 37.16 0.32 -2.82 16 9 O -0.40 -8.46 10.69 -59.04 -0.63 -9.10 16 10 C 0.02 0.50 7.51 38.16 0.29 0.79 16 11 C 0.18 4.74 3.22 -26.88 -0.09 4.65 16 12 H 0.04 1.15 8.14 -51.93 -0.42 0.72 16 13 C -0.53 -14.64 8.83 -34.44 -0.30 -14.94 16 14 H 0.07 1.82 7.76 -52.49 -0.41 1.41 16 15 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16 16 N -0.86 -24.95 13.20 55.43 0.73 -24.21 16 17 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 O -0.35 -9.03 10.40 -59.04 -0.61 -9.65 16 22 C 0.05 0.91 5.91 -2.28 -0.01 0.90 16 23 H 0.02 0.30 8.10 -51.93 -0.42 -0.13 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.59 7.58 -51.93 -0.39 0.20 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.05 5.70 -51.93 -0.30 0.75 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.25 6.10 -51.92 -0.32 0.93 16 32 H 0.06 0.95 6.04 -51.93 -0.31 0.64 16 33 H 0.06 1.35 8.01 -51.93 -0.42 0.93 16 34 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.05 0.94 5.37 -51.93 -0.28 0.66 16 37 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 292.20 15.07 4.40 4.40 Total: -1.00 -29.53 292.20 -8.01 -37.54 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.78 Total: 1.25 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 0.20 Total: -6.76 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: -0.57 Total: -33.60 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -1.25 Total: -18.74 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.53 -8.01 -37.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258667412.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.759 kcal (2) G-P(sol) polarization free energy of solvation -29.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds