Wall clock time and date at job start Mon Mar 30 2020 03:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47446 * 110.99808 * 2 1 4 4 C 1.54322 * 107.23461 * 236.74011 * 3 2 1 5 5 C 1.55144 * 103.01448 * 337.71939 * 4 3 2 6 6 H 1.09000 * 110.98871 * 277.51893 * 5 4 3 7 7 C 1.52999 * 110.99099 * 153.74666 * 5 4 3 8 8 C 1.53004 * 109.62706 * 304.20505 * 7 5 4 9 9 O 1.43372 * 109.63334 * 64.59139 * 7 5 4 10 10 C 1.44191 * 107.28450 * 120.40250 * 9 7 5 11 11 C 1.54907 * 103.07929 * 21.44026 * 10 9 7 12 12 H 1.08998 * 110.98573 * 82.58144 * 11 10 9 13 13 C 1.50702 * 110.97635 * 206.32841 * 11 10 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 11 10 15 15 C 1.37884 * 119.99942 * 179.71847 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 O 1.43752 * 109.51204 * 183.88624 * 7 5 4 22 22 C 1.47885 * 111.01868 * 239.12429 * 2 1 3 23 23 H 1.09001 * 109.47215 * 60.12711 * 1 2 3 24 24 H 1.08994 * 109.47206 * 180.12707 * 1 2 3 25 25 H 1.08998 * 109.47048 * 300.12928 * 1 2 3 26 26 H 1.09005 * 109.88749 * 117.33743 * 3 2 1 27 27 H 1.08995 * 109.89229 * 356.14793 * 3 2 1 28 28 H 1.08996 * 110.70889 * 219.33692 * 4 3 2 29 29 H 1.08999 * 110.85731 * 96.16455 * 4 3 2 30 30 H 1.08995 * 109.47679 * 179.69566 * 8 7 5 31 31 H 1.09013 * 109.46665 * 299.69097 * 8 7 5 32 32 H 1.08995 * 109.47211 * 59.68640 * 8 7 5 33 33 H 1.09003 * 110.69635 * 263.03523 * 10 9 7 34 34 H 1.09004 * 110.69318 * 139.83749 * 10 9 7 35 35 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 36 36 H 1.08996 * 110.35478 * 27.51635 * 22 2 1 37 37 H 1.09005 * 110.40652 * 265.16314 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3765 0.0000 4 6 2.9159 1.5137 -1.2325 5 6 3.3047 0.0444 -1.5437 6 1 4.1306 -0.2830 -0.9123 7 6 3.6484 -0.1297 -3.0244 8 6 2.4752 0.3462 -3.8837 9 8 4.8186 0.6360 -3.3406 10 6 5.8148 -0.2856 -3.8279 11 6 4.9727 -1.5031 -4.2841 12 1 4.5705 -1.3466 -5.2850 13 6 5.7828 -2.7725 -4.2237 14 1 6.8103 -2.7421 -3.8923 15 6 5.2104 -3.9735 -4.5855 16 7 3.9591 -4.0106 -4.9886 17 14 6.2122 -5.5479 -4.5033 18 1 7.5822 -5.2383 -4.0212 19 1 5.5619 -6.5002 -3.5674 20 1 6.2888 -6.1572 -5.8554 21 8 3.9147 -1.5160 -3.2957 22 6 1.9994 -0.7084 -1.1848 23 1 -0.3634 0.5119 -0.8911 24 1 -0.3633 -1.0276 0.0023 25 1 -0.3633 0.5158 0.8888 26 1 2.5697 1.5540 0.9106 27 1 1.1755 2.0892 -0.0689 28 1 3.8000 2.1034 -0.9905 29 1 2.3771 1.9556 -2.0707 30 1 2.7247 0.2261 -4.9379 31 1 1.5902 -0.2459 -3.6501 32 1 2.2748 1.3970 -3.6751 33 1 6.5007 -0.5689 -3.0295 34 1 6.3581 0.1441 -4.6695 35 1 3.5565 -4.8555 -5.2435 36 1 1.2894 -0.6516 -2.0098 37 1 2.2161 -1.7484 -0.9404 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258667412.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:48 Heat of formation + Delta-G solvation = -103.827976 kcal Electronic energy + Delta-G solvation = -18615.204464 eV Core-core repulsion = 15777.762225 eV Total energy + Delta-G solvation = -2837.442239 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.47156 -39.54722 -35.79353 -34.93301 -33.94778 -31.41707 -29.96289 -29.26766 -26.87937 -26.38721 -23.85007 -23.19238 -21.71128 -20.48119 -18.95813 -17.71097 -17.52115 -16.87262 -16.56064 -16.39576 -15.40423 -15.20917 -15.01115 -14.63404 -14.45986 -14.26867 -13.96009 -13.67054 -13.21391 -12.95460 -12.90312 -12.76567 -12.58754 -12.50716 -12.33671 -12.18222 -12.09174 -11.94206 -11.55493 -11.21060 -10.86724 -10.62387 -10.17916 -9.28476 -8.26418 -6.48328 1.39726 1.41673 1.54189 2.35400 2.67980 2.90546 3.10021 3.52893 3.66002 3.76781 4.00256 4.15757 4.20236 4.26764 4.28815 4.41269 4.42820 4.55420 4.59737 4.60887 4.68565 4.77992 4.88600 4.91778 4.95478 4.99328 5.09354 5.13093 5.22242 5.38702 5.41034 5.62533 5.93006 6.02267 6.13946 6.52625 6.75228 7.28241 8.82822 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030721 B = 0.007093 C = 0.006369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.200702 B = 3946.386967 C = 4394.960596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.550 5.550 3 C 0.045 3.955 4 C -0.125 4.125 5 C -0.093 4.093 6 H 0.066 0.934 7 C 0.244 3.756 8 C -0.162 4.162 9 O -0.397 6.397 10 C 0.033 3.967 11 C 0.178 3.822 12 H 0.013 0.987 13 C -0.554 4.554 14 H 0.073 0.927 15 C 0.026 3.974 16 N -0.900 5.900 17 Si 0.969 3.031 18 H -0.260 1.260 19 H -0.281 1.281 20 H -0.272 1.272 21 O -0.384 6.384 22 C 0.061 3.939 23 H 0.032 0.968 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.266 0.734 36 H 0.053 0.947 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.585 9.813 6.614 12.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.274 5.274 3 C -0.082 4.082 4 C -0.163 4.163 5 C -0.113 4.113 6 H 0.085 0.915 7 C 0.166 3.834 8 C -0.219 4.219 9 O -0.318 6.318 10 C -0.043 4.043 11 C 0.122 3.878 12 H 0.031 0.969 13 C -0.591 4.591 14 H 0.091 0.909 15 C -0.177 4.177 16 N -0.537 5.537 17 Si 0.793 3.207 18 H -0.183 1.183 19 H -0.207 1.207 20 H -0.198 1.198 21 O -0.305 6.305 22 C -0.067 4.067 23 H 0.050 0.950 24 H 0.083 0.917 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.679 9.500 7.131 12.768 hybrid contribution 0.157 -0.777 -1.078 1.338 sum -4.522 8.724 6.053 11.541 Atomic orbital electron populations 1.22599 0.86383 1.02376 1.01507 1.63555 1.09286 1.15028 1.39557 1.22896 0.98281 0.88936 0.98123 1.22829 1.00496 0.94285 0.98662 1.22432 0.97897 0.97514 0.93446 0.91504 1.23289 0.86798 0.79526 0.93738 1.22384 0.97714 1.02425 0.99390 1.88664 1.24362 1.33331 1.85463 1.24216 0.91660 0.89540 0.98909 1.21313 0.83888 0.94469 0.88087 0.96902 1.21296 0.98024 0.92406 1.47348 0.90892 1.25986 0.95880 1.02991 0.92883 1.70151 1.13745 1.27394 1.42412 0.85352 0.79026 0.78266 0.78065 1.18338 1.20676 1.19772 1.89516 1.57859 1.21784 1.61324 1.22893 0.94595 0.97807 0.91407 0.94975 0.91734 0.89478 0.89876 0.90493 0.89912 0.90223 0.93625 0.91073 0.89227 0.91752 0.88026 0.92530 0.92919 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.12 127.69 1.16 1.60 16 2 N -0.55 -15.51 5.44 -911.60 -4.96 -20.47 16 3 C 0.04 1.06 6.90 86.65 0.60 1.66 16 4 C -0.12 -3.40 6.13 31.78 0.19 -3.21 16 5 C -0.09 -3.36 2.87 -9.41 -0.03 -3.39 16 6 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 7 C 0.24 10.21 0.87 30.60 0.03 10.24 16 8 C -0.16 -5.94 8.55 71.98 0.62 -5.32 16 9 O -0.40 -16.59 10.69 -126.22 -1.35 -17.94 16 10 C 0.03 1.43 7.51 72.63 0.55 1.98 16 11 C 0.18 9.37 3.22 30.50 0.10 9.47 16 12 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 13 C -0.55 -30.95 8.83 25.60 0.23 -30.72 16 14 H 0.07 3.89 7.76 -2.91 -0.02 3.87 16 15 C 0.03 1.43 5.45 84.66 0.46 1.89 16 16 N -0.90 -53.42 13.20 21.45 0.28 -53.14 16 17 Si 0.97 43.29 29.54 68.60 2.03 45.31 16 18 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 O -0.38 -20.23 10.40 -126.22 -1.31 -21.54 16 22 C 0.06 2.09 5.91 86.76 0.51 2.60 16 23 H 0.03 0.67 8.10 -2.39 -0.02 0.65 16 24 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.08 1.46 7.58 -2.39 -0.02 1.44 16 28 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.08 2.05 5.70 -2.39 -0.01 2.04 16 30 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 2.56 6.10 -2.38 -0.01 2.54 16 32 H 0.09 2.69 6.04 -2.39 -0.01 2.68 16 33 H 0.06 2.76 8.01 -2.39 -0.02 2.74 16 34 H 0.10 3.89 8.14 -2.38 -0.02 3.87 16 35 H 0.27 14.77 8.31 -92.70 -0.77 14.00 16 36 H 0.05 1.81 5.37 -2.39 -0.01 1.80 16 37 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -64.21 292.20 0.14 -64.07 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 1.04 Total: 16.90 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 4.42 Total: -13.19 kcal Atomic # 7 Polarization: -68.93 SS G_CDS: -4.68 Total: -73.61 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -2.66 Total: -39.48 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -64.21 0.14 -64.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258667412.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.761 kcal (2) G-P(sol) polarization free energy of solvation -64.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds