Wall clock time and date at job start Mon Mar 30 2020 03:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47444 * 110.99793 * 2 1 4 4 C 1.54314 * 107.23372 * 236.74003 * 3 2 1 5 5 C 1.55151 * 103.01930 * 337.72017 * 4 3 2 6 6 H 1.08997 * 110.98592 * 277.51810 * 5 4 3 7 7 C 1.52999 * 110.98853 * 153.74377 * 5 4 3 8 8 C 1.53005 * 109.62163 * 178.73143 * 7 5 4 9 9 O 1.43743 * 109.63133 * 298.96961 * 7 5 4 10 10 C 1.44792 * 104.81512 * 144.19390 * 9 7 5 11 11 C 1.54914 * 101.72084 * 323.90212 * 10 9 7 12 12 H 1.09000 * 110.84252 * 277.09014 * 11 10 9 13 13 C 1.50695 * 110.69565 * 153.95451 * 11 10 9 14 14 H 1.07998 * 120.00138 * 4.88820 * 13 11 10 15 15 C 1.37878 * 119.99856 * 184.88606 * 13 11 10 16 16 N 1.31513 * 120.00159 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99787 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47172 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47135 * 239.99856 * 17 15 13 20 20 H 1.48499 * 109.47070 * 120.00207 * 17 15 13 21 21 O 1.43369 * 109.63385 * 58.34202 * 7 5 4 22 22 C 1.47842 * 111.00012 * 239.15833 * 2 1 3 23 23 H 1.08994 * 109.47150 * 60.12527 * 1 2 3 24 24 H 1.09005 * 109.46706 * 180.13119 * 1 2 3 25 25 H 1.08997 * 109.46895 * 300.12207 * 1 2 3 26 26 H 1.08999 * 109.88654 * 117.33507 * 3 2 1 27 27 H 1.08992 * 110.02311 * 356.22430 * 3 2 1 28 28 H 1.08998 * 110.70960 * 219.33415 * 4 3 2 29 29 H 1.09000 * 110.85436 * 96.16408 * 4 3 2 30 30 H 1.08996 * 109.47298 * 304.86597 * 8 7 5 31 31 H 1.08997 * 109.47178 * 64.87180 * 8 7 5 32 32 H 1.09000 * 109.46818 * 184.86816 * 8 7 5 33 33 H 1.08993 * 110.97927 * 205.78935 * 10 9 7 34 34 H 1.09004 * 110.97298 * 82.00530 * 10 9 7 35 35 H 0.96997 * 119.99927 * 359.97438 * 16 15 13 36 36 H 1.08992 * 110.37680 * 27.52763 * 22 2 1 37 37 H 1.09007 * 110.37098 * 265.18803 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9158 1.5137 -1.2324 5 6 3.3047 0.0444 -1.5438 6 1 4.1307 -0.2830 -0.9124 7 6 3.6483 -0.1296 -3.0245 8 6 4.0569 -1.5799 -3.2902 9 8 2.5034 0.2015 -3.8281 10 6 3.0507 0.8359 -5.0089 11 6 4.2493 1.6196 -4.4182 12 1 3.9225 2.5731 -4.0031 13 6 5.3135 1.8329 -5.4636 14 1 5.1382 1.5238 -6.4834 15 6 6.5109 2.4226 -5.1181 16 7 6.7245 2.7986 -3.8761 17 14 7.8298 2.6876 -6.4141 18 1 7.3458 2.1815 -7.7236 19 1 9.0613 1.9549 -6.0242 20 1 8.1307 4.1375 -6.5249 21 8 4.7275 0.7468 -3.3748 22 6 1.9988 -0.7076 -1.1850 23 1 -0.3633 0.5119 -0.8911 24 1 -0.3633 -1.0277 0.0024 25 1 -0.3633 0.5157 0.8889 26 1 2.5696 1.5540 0.9105 27 1 1.1771 2.0911 -0.0674 28 1 3.8000 2.1034 -0.9905 29 1 2.3771 1.9555 -2.0706 30 1 4.8734 -1.8555 -2.6228 31 1 3.2048 -2.2359 -3.1122 32 1 4.3837 -1.6815 -4.3251 33 1 2.3255 1.5132 -5.4597 34 1 3.3885 0.0919 -5.7304 35 1 6.0395 2.6614 -3.2032 36 1 1.2890 -0.6503 -2.0101 37 1 2.2149 -1.7478 -0.9408 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258667414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:50 Heat of formation + Delta-G solvation = -93.435384 kcal Electronic energy + Delta-G solvation = -18796.606797 eV Core-core repulsion = 15959.615214 eV Total energy + Delta-G solvation = -2836.991583 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.00831 -38.10624 -34.21081 -33.22669 -32.03394 -30.39158 -28.25237 -27.66794 -25.53513 -24.31195 -22.06389 -21.46619 -20.57773 -19.53329 -17.21733 -16.40011 -16.11956 -15.46406 -14.57182 -14.31856 -13.85236 -13.78751 -13.68005 -13.21034 -12.90822 -12.76695 -12.39296 -12.15914 -11.83586 -11.61476 -11.49706 -11.39525 -11.05058 -10.94897 -10.79335 -10.64522 -10.51553 -10.28628 -10.15489 -9.20871 -9.05438 -8.58946 -8.27727 -8.15457 -6.47880 -4.28260 3.38938 3.42824 3.55809 4.11685 4.30499 4.46888 4.69284 4.95279 5.03650 5.20773 5.38924 5.41140 5.50129 5.55507 5.70544 5.76179 5.84776 5.88704 5.89193 5.94526 5.96764 6.02523 6.14838 6.22096 6.29619 6.40532 6.47392 6.55871 6.60250 6.73530 7.05044 7.14783 7.19078 7.92771 8.16811 8.38507 8.74686 9.55171 10.94225 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.040914 B = 0.006818 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.196214 B = 4105.556545 C = 4331.880125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.537 5.537 3 C 0.042 3.958 4 C -0.127 4.127 5 C -0.094 4.094 6 H 0.091 0.909 7 C 0.259 3.741 8 C -0.164 4.164 9 O -0.392 6.392 10 C 0.028 3.972 11 C 0.171 3.829 12 H 0.032 0.968 13 C -0.616 4.616 14 H 0.060 0.940 15 C 0.035 3.965 16 N -0.886 5.886 17 Si 1.076 2.924 18 H -0.288 1.288 19 H -0.285 1.285 20 H -0.285 1.285 21 O -0.371 6.371 22 C 0.051 3.949 23 H 0.027 0.973 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.281 0.719 36 H 0.058 0.942 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.165 -4.975 4.326 11.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.261 5.261 3 C -0.085 4.085 4 C -0.166 4.166 5 C -0.114 4.114 6 H 0.110 0.890 7 C 0.181 3.819 8 C -0.222 4.222 9 O -0.313 6.313 10 C -0.048 4.048 11 C 0.116 3.884 12 H 0.050 0.950 13 C -0.653 4.653 14 H 0.078 0.922 15 C -0.174 4.174 16 N -0.520 5.520 17 Si 0.904 3.096 18 H -0.214 1.214 19 H -0.211 1.211 20 H -0.211 1.211 21 O -0.293 6.293 22 C -0.076 4.076 23 H 0.045 0.955 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.534 -4.674 4.711 10.040 hybrid contribution -1.871 -0.239 -0.637 1.991 sum -9.405 -4.913 4.075 11.366 Atomic orbital electron populations 1.22504 0.88193 1.01671 1.00358 1.63605 1.07579 1.14533 1.40359 1.22831 0.97863 0.89010 0.98833 1.22665 0.99770 0.96802 0.97338 1.22595 0.97647 0.95964 0.95160 0.89050 1.22896 0.78526 0.91139 0.89378 1.22320 1.01281 0.95675 1.02929 1.89027 1.30233 1.79782 1.32294 1.24377 0.96447 0.95860 0.88131 1.21431 0.92243 0.89041 0.85671 0.95001 1.21933 1.03063 1.45835 0.94491 0.92224 1.25887 0.98980 0.92483 1.00079 1.70619 1.37261 1.41992 1.02104 0.83457 0.75325 0.76723 0.74115 1.21415 1.21113 1.21147 1.89176 1.33777 1.48705 1.57597 1.23009 0.95684 0.97876 0.91029 0.95475 0.91696 0.91727 0.90705 0.93046 0.90391 0.91118 0.91540 0.92089 0.91912 0.89609 0.91806 0.90780 0.92341 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.12 60.07 0.55 0.81 16 2 N -0.54 -7.88 5.44 -239.53 -1.30 -9.18 16 3 C 0.04 0.62 6.89 -2.84 -0.02 0.60 16 4 C -0.13 -2.24 6.05 -24.90 -0.15 -2.40 16 5 C -0.09 -1.68 2.65 -88.48 -0.23 -1.92 16 6 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 7 C 0.26 5.26 0.78 -26.73 -0.02 5.24 16 8 C -0.16 -2.96 9.00 37.16 0.33 -2.63 16 9 O -0.39 -8.00 9.14 -59.04 -0.54 -8.54 16 10 C 0.03 0.60 7.33 38.17 0.28 0.88 16 11 C 0.17 4.32 3.05 -26.88 -0.08 4.24 16 12 H 0.03 0.86 8.08 -51.93 -0.42 0.44 16 13 C -0.62 -17.08 8.83 -34.44 -0.30 -17.38 16 14 H 0.06 1.62 7.78 -52.49 -0.41 1.21 16 15 C 0.03 0.98 5.42 -17.82 -0.10 0.89 16 16 N -0.89 -26.64 13.56 55.43 0.75 -25.89 16 17 Si 1.08 24.76 29.90 -169.99 -5.08 19.68 16 18 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 21 O -0.37 -9.28 9.10 -59.04 -0.54 -9.82 16 22 C 0.05 0.80 5.54 -2.30 -0.01 0.79 16 23 H 0.03 0.34 8.10 -51.93 -0.42 -0.08 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.05 0.70 7.59 -51.93 -0.39 0.30 16 28 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 29 H 0.07 1.35 7.47 -51.93 -0.39 0.96 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.95 7.76 -51.93 -0.40 0.54 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 34 H 0.06 1.35 8.04 -51.93 -0.42 0.94 16 35 H 0.28 8.52 6.60 -40.82 -0.27 8.26 16 36 H 0.06 0.96 6.71 -51.93 -0.35 0.61 16 37 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 LS Contribution 294.53 15.07 4.44 4.44 Total: -1.00 -30.05 294.53 -8.10 -38.15 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.07 Total: 2.03 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 0.24 Total: -10.88 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: -0.55 Total: -35.07 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -1.08 Total: -18.36 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.08 Total: 19.68 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.05 -8.10 -38.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258667414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.282 kcal (2) G-P(sol) polarization free energy of solvation -30.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds