Wall clock time and date at job start Mon Mar 30 2020 03:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47444 * 110.99793 * 2 1 4 4 C 1.54314 * 107.23372 * 236.74003 * 3 2 1 5 5 C 1.55151 * 103.01930 * 337.72017 * 4 3 2 6 6 H 1.08997 * 110.98592 * 277.51810 * 5 4 3 7 7 C 1.52999 * 110.98853 * 153.74377 * 5 4 3 8 8 C 1.53005 * 109.62163 * 178.73143 * 7 5 4 9 9 O 1.43743 * 109.63133 * 298.96961 * 7 5 4 10 10 C 1.44792 * 104.81512 * 144.19390 * 9 7 5 11 11 C 1.54914 * 101.72084 * 323.90212 * 10 9 7 12 12 H 1.09000 * 110.84252 * 277.09014 * 11 10 9 13 13 C 1.50695 * 110.69565 * 153.95451 * 11 10 9 14 14 H 1.07998 * 120.00138 * 4.88820 * 13 11 10 15 15 C 1.37878 * 119.99856 * 184.88606 * 13 11 10 16 16 N 1.31513 * 120.00159 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99787 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47172 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47135 * 239.99856 * 17 15 13 20 20 H 1.48499 * 109.47070 * 120.00207 * 17 15 13 21 21 O 1.43369 * 109.63385 * 58.34202 * 7 5 4 22 22 C 1.47842 * 111.00012 * 239.15833 * 2 1 3 23 23 H 1.08994 * 109.47150 * 60.12527 * 1 2 3 24 24 H 1.09005 * 109.46706 * 180.13119 * 1 2 3 25 25 H 1.08997 * 109.46895 * 300.12207 * 1 2 3 26 26 H 1.08999 * 109.88654 * 117.33507 * 3 2 1 27 27 H 1.08992 * 110.02311 * 356.22430 * 3 2 1 28 28 H 1.08998 * 110.70960 * 219.33415 * 4 3 2 29 29 H 1.09000 * 110.85436 * 96.16408 * 4 3 2 30 30 H 1.08996 * 109.47298 * 304.86597 * 8 7 5 31 31 H 1.08997 * 109.47178 * 64.87180 * 8 7 5 32 32 H 1.09000 * 109.46818 * 184.86816 * 8 7 5 33 33 H 1.08993 * 110.97927 * 205.78935 * 10 9 7 34 34 H 1.09004 * 110.97298 * 82.00530 * 10 9 7 35 35 H 0.96997 * 119.99927 * 359.97438 * 16 15 13 36 36 H 1.08992 * 110.37680 * 27.52763 * 22 2 1 37 37 H 1.09007 * 110.37098 * 265.18803 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9158 1.5137 -1.2324 5 6 3.3047 0.0444 -1.5438 6 1 4.1307 -0.2830 -0.9124 7 6 3.6483 -0.1296 -3.0245 8 6 4.0569 -1.5799 -3.2902 9 8 2.5034 0.2015 -3.8281 10 6 3.0507 0.8359 -5.0089 11 6 4.2493 1.6196 -4.4182 12 1 3.9225 2.5731 -4.0031 13 6 5.3135 1.8329 -5.4636 14 1 5.1382 1.5238 -6.4834 15 6 6.5109 2.4226 -5.1181 16 7 6.7245 2.7986 -3.8761 17 14 7.8298 2.6876 -6.4141 18 1 7.3458 2.1815 -7.7236 19 1 9.0613 1.9549 -6.0242 20 1 8.1307 4.1375 -6.5249 21 8 4.7275 0.7468 -3.3748 22 6 1.9988 -0.7076 -1.1850 23 1 -0.3633 0.5119 -0.8911 24 1 -0.3633 -1.0277 0.0024 25 1 -0.3633 0.5157 0.8889 26 1 2.5696 1.5540 0.9105 27 1 1.1771 2.0911 -0.0674 28 1 3.8000 2.1034 -0.9905 29 1 2.3771 1.9555 -2.0706 30 1 4.8734 -1.8555 -2.6228 31 1 3.2048 -2.2359 -3.1122 32 1 4.3837 -1.6815 -4.3251 33 1 2.3255 1.5132 -5.4597 34 1 3.3885 0.0919 -5.7304 35 1 6.0395 2.6614 -3.2032 36 1 1.2890 -0.6503 -2.0101 37 1 2.2149 -1.7478 -0.9408 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258667414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:50 Heat of formation + Delta-G solvation = -113.860497 kcal Electronic energy + Delta-G solvation = -18797.492496 eV Core-core repulsion = 15959.615214 eV Total energy + Delta-G solvation = -2837.877282 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.64342 -39.47587 -36.09018 -34.99243 -33.72045 -31.81327 -29.99014 -29.09701 -26.71191 -26.29269 -23.59847 -23.32652 -21.81598 -21.06839 -19.28153 -18.06650 -17.60272 -16.87176 -16.16493 -15.91843 -15.63406 -15.50977 -15.01204 -14.61320 -14.31863 -14.12817 -14.02969 -13.79469 -13.53433 -13.21880 -13.03130 -12.72389 -12.63877 -12.48296 -12.28442 -12.17455 -12.02864 -11.91767 -11.69120 -11.07191 -10.84298 -10.68320 -10.14449 -9.37475 -8.71804 -6.52651 1.52895 1.61900 1.78152 2.50994 2.65875 2.87567 3.10159 3.32642 3.60346 3.70779 3.78837 4.04855 4.11970 4.24174 4.26992 4.33917 4.44844 4.48476 4.51943 4.54811 4.60469 4.67591 4.75040 4.83969 4.91603 4.96609 4.99251 5.07545 5.16573 5.21273 5.25538 5.83490 5.86544 6.02714 6.05818 6.45256 6.55292 7.40392 8.69527 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.040914 B = 0.006818 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.196214 B = 4105.556545 C = 4331.880125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.541 5.541 3 C 0.050 3.950 4 C -0.127 4.127 5 C -0.096 4.096 6 H 0.089 0.911 7 C 0.247 3.753 8 C -0.160 4.160 9 O -0.386 6.386 10 C 0.038 3.962 11 C 0.166 3.834 12 H 0.004 0.996 13 C -0.630 4.630 14 H 0.063 0.937 15 C -0.017 4.017 16 N -0.915 5.915 17 Si 1.124 2.876 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.276 1.276 21 O -0.398 6.398 22 C 0.063 3.937 23 H 0.022 0.978 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.265 0.735 36 H 0.051 0.949 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.119 -6.140 4.260 12.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.265 5.265 3 C -0.078 4.078 4 C -0.166 4.166 5 C -0.115 4.115 6 H 0.107 0.893 7 C 0.170 3.830 8 C -0.217 4.217 9 O -0.307 6.307 10 C -0.038 4.038 11 C 0.111 3.889 12 H 0.022 0.978 13 C -0.667 4.667 14 H 0.081 0.919 15 C -0.219 4.219 16 N -0.550 5.550 17 Si 0.945 3.055 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.202 1.202 21 O -0.320 6.320 22 C -0.065 4.065 23 H 0.040 0.960 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.125 0.875 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.522 -5.854 4.650 11.336 hybrid contribution -1.646 0.103 -0.575 1.747 sum -10.168 -5.751 4.075 12.372 Atomic orbital electron populations 1.22607 0.86381 1.02913 1.00952 1.63670 1.09280 1.13969 1.39556 1.22794 0.97756 0.89776 0.97475 1.22589 0.99396 0.96453 0.98122 1.22585 0.99020 0.96502 0.93407 0.89273 1.23315 0.77504 0.91510 0.90687 1.22299 1.02716 0.94459 1.02258 1.89020 1.30097 1.79656 1.31971 1.24256 0.95481 0.95794 0.88277 1.21264 0.93221 0.88821 0.85589 0.97800 1.22315 1.03639 1.45406 0.95316 0.91879 1.27417 1.01630 0.91765 1.01069 1.70751 1.37105 1.44241 1.02879 0.82862 0.72856 0.77262 0.72525 1.19129 1.20747 1.20150 1.89097 1.35926 1.49394 1.57622 1.22928 0.93867 0.98487 0.91211 0.95976 0.90207 0.90016 0.89794 0.91729 0.92490 0.93188 0.90929 0.89108 0.93198 0.87541 0.91418 0.92502 0.93066 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.12 127.69 1.16 1.58 16 2 N -0.54 -14.57 5.44 -911.74 -4.96 -19.53 16 3 C 0.05 1.40 6.89 86.64 0.60 2.00 16 4 C -0.13 -4.55 6.05 31.78 0.19 -4.35 16 5 C -0.10 -3.37 2.65 -9.41 -0.02 -3.40 16 6 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 7 C 0.25 9.98 0.78 30.60 0.02 10.00 16 8 C -0.16 -5.54 9.00 71.98 0.65 -4.89 16 9 O -0.39 -15.48 9.14 -126.22 -1.15 -16.64 16 10 C 0.04 1.61 7.33 72.64 0.53 2.15 16 11 C 0.17 8.62 3.05 30.50 0.09 8.71 16 12 H 0.00 0.25 8.08 -2.39 -0.02 0.23 16 13 C -0.63 -35.33 8.83 25.60 0.23 -35.11 16 14 H 0.06 3.41 7.78 -2.91 -0.02 3.38 16 15 C -0.02 -0.95 5.42 84.66 0.46 -0.49 16 16 N -0.91 -56.55 13.56 21.45 0.29 -56.26 16 17 Si 1.12 49.62 29.90 68.60 2.05 51.67 16 18 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 21 O -0.40 -20.43 9.10 -126.22 -1.15 -21.58 16 22 C 0.06 1.81 5.54 86.77 0.48 2.29 16 23 H 0.02 0.50 8.10 -2.39 -0.02 0.48 16 24 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 25 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.06 1.65 7.59 -2.39 -0.02 1.63 16 28 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.05 1.96 7.47 -2.39 -0.02 1.95 16 30 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.09 2.58 7.76 -2.39 -0.02 2.56 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 34 H 0.07 2.81 8.04 -2.39 -0.02 2.80 16 35 H 0.26 16.83 6.60 -92.71 -0.61 16.22 16 36 H 0.05 1.57 6.71 -2.39 -0.02 1.55 16 37 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 Total: -1.00 -65.16 294.53 0.65 -64.51 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 1.18 Total: 19.33 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 4.39 Total: -21.51 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -4.67 Total: -75.79 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -2.30 Total: -38.22 kcal Atomic # 14 Polarization: 49.62 SS G_CDS: 2.05 Total: 51.67 kcal Total: -65.16 0.65 -64.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258667414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.349 kcal (2) G-P(sol) polarization free energy of solvation -65.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds